HHsearch alignment for GI: 254780627 and conserved domain: PRK08451
>PRK08451 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.84 E-value=6e-07 Score=69.37 Aligned_cols=211 Identities=17% Similarity=0.189 Sum_probs=127.9
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCCE--EEEEHHHHHH
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630-68816--8646988899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ-PNLRV--VYLTAEYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~-~~~~v--~y~~~e~F~~ 239 (502)
T Consensus 12 ~F~evI-GQe~-iv~~L~nAi~~--~Rl~-----HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~~PCg~C~sC~~i~~ 82 (523)
T PRK08451 12 HFDELI-GQES-VSKTLSLALDN--NRLA-----HAYLFSGLRGSGKTSSARIFSRALVCEQGPSSTPCGTCAQCQAALE 82 (523)
T ss_pred CHHHCC-CCHH-HHHHHHHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 654404-9499-99999999985--9967-----1587578998688999999999975999999898887888999864
Q ss_pred H----H--HHHHHCCCHHHHHHHHH---------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 9----9--99986198899999974---------0310205444453175069999999999885698799964875676
Q gi|254780627|r 240 R----F--ASAIRDNCALNLKDSLR---------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 240 ~----~--~~a~~~~~~~~fr~~~r---------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
T Consensus 83 g~hpDViEiDaasn~gID~IReLie~~~~~P~~gryKV~IIDEah~Lt-~~A~NALLKTLEEPP~~vvFILaTTe--p~- 158 (523)
T PRK08451 83 GRHIDIIEMDAASNRGIDDIRNLIEQTKYKPSMARFKIFIIDEVHMLT-KEAFNALLKTLEEPPSYVKFILATTD--PL- 158 (523)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC-HHHHHHHHHHCCCCCCCCEEEEECCC--HH-
T ss_conf 899985510553336899999999972358867972799982603048-99999999970389878379997599--47-
Q ss_pred HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
T Consensus 159 --KLp~TIlSRCQ~f~Fk~I~~~~I~~~L~---~I-----~~~E~i~~e~~AL~~IA~~a~GslRDalslLdQ~i~~~~- 227 (523)
T PRK08451 159 --KLPATILSRTQHFRFKQIPQNSIISHLK---TI-----LNKEGVSYEPEALEILARSGSGSLRDTLTLLDQAIIFCK- 227 (523)
T ss_pred --HCHHHHHHHHHCCCCCCCCHHHHHHHHH---HH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-
T ss_conf --6848887420311033799999999999---99-----998399879999999999778948689879999998479-
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24687788999998
Q gi|254780627|r 385 APILTAEIADELLS 398 (502)
Q Consensus 385 ~~~~~~~~~~~~l~ 398 (502)
T Consensus 228 -~~i~~~~v~~~lG 240 (523)
T PRK08451 228 -NAITESKVADMLG 240 (523)
T ss_pred -CCCCHHHHHHHHC
T ss_conf -9877999999858