HHsearch alignment for GI: 254780627 and conserved domain: PRK08691
>PRK08691 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.40 E-value=3.8e-05 Score=56.62 Aligned_cols=211 Identities=15% Similarity=0.179 Sum_probs=125.5
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE---EHHHHHH
Q ss_conf 8876328861478999999998241001365555548986278888579999999999863068816864---6988899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL---TAEYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~---~~e~F~~ 239 (502)
T Consensus 14 ~F~e~v-GQ~-~v~~~L~nal~~--~rl~-----haylf~G~rGvGKTt~Ari~Ak~lNC~~~~~~~pCg~C~~C~~i~~ 84 (704)
T PRK08691 14 TFADLV-GQE-HVVKALQNALDE--GRLH-----HAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDA 84 (704)
T ss_pred CHHHHC-CCH-HHHHHHHHHHHH--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 475641-869-999999999981--9975-----2375027898788899999999967999999997877776787855
Q ss_pred ----H--HHHHHHCCCHHHHHHHHH---------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf ----9--999986198899999974---------0310205444453175069999999999885698799964875676
Q gi|254780627|r 240 ----R--FASAIRDNCALNLKDSLR---------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 240 ----~--~~~a~~~~~~~~fr~~~r---------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
T Consensus 85 g~~~D~~EiDaAs~~~vdd~R~l~~~~~y~P~~~~yKVyiiDEvhmLs-~~afNAlLKtLEEPP~~v~FilaTTd--p~K 161 (704)
T PRK08691 85 GRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-KSAFNAMLKTLEEPPEHVKFILATTD--PHK 161 (704)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCC-HHHHHHHHHHHCCCCCCEEEEEECCC--HHH
T ss_conf 899874774245445889999999853468867853599983154438-99999999861479756089985488--464
Q ss_pred HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
T Consensus 162 ---lp~TIlSRC~---~f~l~~~~~~~i~~~L~~i-----~~~E~i~~e~~al~~ia~~a~Gs~RDalslldQaia~~-- 228 (704)
T PRK08691 162 ---VPVTVLSRCL---QFVLRNMTAQQVADHLAHV-----LDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALG-- 228 (704)
T ss_pred ---CCHHHHHHHH---HHCCCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--
T ss_conf ---7589998887---7102689999999999999-----99839856899999999975785777988999999964--
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24687788999998
Q gi|254780627|r 385 APILTAEIADELLS 398 (502)
Q Consensus 385 ~~~~~~~~~~~~l~ 398 (502)
T Consensus 229 ~g~~~~~~v~~mLG 242 (704)
T PRK08691 229 SGKVAENDVRQMIG 242 (704)
T ss_pred CCCCCHHHHHHHHC
T ss_conf 89626999999858