HHsearch alignment for GI: 254780627 and conserved domain: PRK08699
>PRK08699 DNA polymerase III subunit delta'; Validated.
Probab=94.30 E-value=0.27 Score=29.27 Aligned_cols=131 Identities=15% Similarity=0.157 Sum_probs=75.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCC--------------------CEEEEEHHHHHHHHHHHH--HCCCHHHHH
Q ss_conf 5489862788885799999999998630688--------------------168646988899999998--619889999
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNL--------------------RVVYLTAEYFMWRFASAI--RDNCALNLK 254 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~--------------------~v~y~~~e~F~~~~~~a~--~~~~~~~fr 254 (502)
T Consensus 22 HA~L~~Gp~G~Gk~~~A~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~--~g~~~~~I~idqiR 99 (325)
T PRK08699 22 NAWLFVGKKGTGKTAFARFAAKALLCETPAPGCKPCGECMSCHLFGQGSHPDFYEITPLADEPE--NGRKLLQIKIDAVR 99 (325)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCC--CCCCCCCCCHHHHH
T ss_conf 1797579999789999999999982899988899898888899986599999688513445300--16655667699999
Q ss_pred H---H-----HH-HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEEC
Q ss_conf 9---9-----74-0310205444453175069999999999885698799964875676136303457653021157751
Q gi|254780627|r 255 D---S-----LR-NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 (502)
Q Consensus 255 ~---~-----~r-~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~ 325 (502)
T Consensus 100 ~l~~~~~~~~~~~~~kV~ii~~ae~mn-~~aaNaLLK~LEEP-p~~~~fiL~t~~~~----~llpTI~SRc~---~~~~~ 170 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMN-VQAANSLLKVLEEP-PPQVVFLLVSHAAD----KVLPTIKSRCR---KMVLP 170 (325)
T ss_pred HHHHHHCCCCCCCCCEEEEECCHHHHC-HHHHHHHHHHHCCC-CCCEEEEEEECCHH----HCCCHHHHCCC---CCCCC
T ss_conf 999997108656894699985777758-99999999984178-88848999879846----46233986454---21089
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 5888999999999
Q gi|254780627|r 326 LHDYEMRFSILKN 338 (502)
Q Consensus 326 ~Pd~e~r~~Il~~ 338 (502)
T Consensus 171 ~p~~~~~~~~L~~ 183 (325)
T PRK08699 171 APSHEEALAYLRE 183 (325)
T ss_pred CCCHHHHHHHHHH
T ss_conf 9599999999997