HHsearch alignment for GI: 254780627 and conserved domain: PRK08853
>PRK08853 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.12 E-value=0.00015 Score=52.31 Aligned_cols=210 Identities=17% Similarity=0.178 Sum_probs=122.1
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE-CCCCCCHHHHHHHHHHHHHHHCC-CCC--EEEEEHHHHH
Q ss_conf 8876328861478999999998241001365555548986-27888857999999999986306-881--6864698889
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH-ASVGLGKTHLLQAIANASIKRQP-NLR--VVYLTAEYFM 238 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~-G~~GlGKTHLl~ai~~~~~~~~~-~~~--v~y~~~e~F~ 238 (502)
T Consensus 14 ~f~e~v-GQ~~v~-~~L~nal~~--~rl------~haylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~C~~i~ 83 (717)
T PRK08853 14 QFKEVV-GQSHVL-TALENALAH--NRL------HHAYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCATCKEID 83 (717)
T ss_pred CHHHHC-CCHHHH-HHHHHHHHC--CCC------CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
T ss_conf 565513-859999-999999970--997------4057610889888989999999986789999999788870267674
Q ss_pred HH-H-----HHHHHCCCHHHHHHH-----HH----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 99-9-----999861988999999-----74----031020544445317506999999999988569879996487567
Q gi|254780627|r 239 WR-F-----ASAIRDNCALNLKDS-----LR----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPS 303 (502)
Q Consensus 239 ~~-~-----~~a~~~~~~~~fr~~-----~r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~ 303 (502)
T Consensus 84 ~g~~~d~~EiDaAs~~~vdd~rel~~~~~y~p~~~~yKvyiiDEvHmls-~~afnAlLKtlEEPP~hv~FilaTT~--~~ 160 (717)
T PRK08853 84 EGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLIDEVHMLS-RHSFNALLKTLEEPPEYVKFLLATTD--PQ 160 (717)
T ss_pred CCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCC-HHHHHHHHHHHCCCCCCEEEEEECCC--HH
T ss_conf 4787752454056567889999999855548877854799983054438-99999998760378756489984387--34
Q ss_pred HHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 61363034576530211577515888999999999998864311689789899999985027888999999999999863
Q gi|254780627|r 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 (502)
Q Consensus 304 ~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~ 383 (502)
T Consensus 161 ---kip~TilSRc~---~f~l~~~~~~~i~~~l~~i-----~~~E~i~~~~~al~~ia~~a~Gs~Rdalsl~dqaia~~- 228 (717)
T PRK08853 161 ---KLPVTILSRCL---QFHLKPISVDQIHQQLDFV-----LDKEQVSAEARALGLIAHAADGSMRDALSLTDQAIALG- 228 (717)
T ss_pred ---HCCHHHHHHHH---HCCCCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-
T ss_conf ---37388987654---4232689999999999999-----99759876999999999976883778888999999965-
Q ss_pred HCCCCCHHHHHHHHH
Q ss_conf 024687788999998
Q gi|254780627|r 384 FAPILTAEIADELLS 398 (502)
Q Consensus 384 ~~~~~~~~~~~~~l~ 398 (502)
T Consensus 229 -~g~~~~~~v~~mlg 242 (717)
T PRK08853 229 -NGQVTTDIVSHMLG 242 (717)
T ss_pred -CCCCCHHHHHHHHC
T ss_conf -89716999999858