HHsearch alignment for GI: 254780627 and conserved domain: PRK08927
>PRK08927 fliI flagellum-specific ATP synthase; Validated.
Probab=94.16 E-value=0.11 Score=32.12 Aligned_cols=36 Identities=33% Similarity=0.412 Sum_probs=25.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH
Q ss_conf 898627888857999999999986306881686469888
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F 237 (502)
T Consensus 161 igIfagsGvGKs~Ll~~i~r~~---~adv~VialIGeRg 196 (441)
T PRK08927 161 LGIFAGSGVGKSVLLSMLARNT---DADVSVIGLIGERG 196 (441)
T ss_pred EEECCCCCCCHHHHHHHHHHHC---CCCCEEEEECCCCH
T ss_conf 6631689998789999998641---67737875226518