HHsearch alignment for GI: 254780627 and conserved domain: PRK09111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.16 E-value=0.00026 Score=50.68 Aligned_cols=211 Identities=18% Similarity=0.217 Sum_probs=126.1
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC------CC--EEEEEH
Q ss_conf 8876328861478999999998241001365555548986278888579999999999863068------81--686469
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN------LR--VVYLTA 234 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~------~~--v~y~~~ 234 (502)
T Consensus 21 ~f~~~~-gq-~~~~~~l~~~~~~--~~~~-----~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~c 91 (600)
T PRK09111 21 TFDDLI-GQ-EAMVRTLRNAFET--GRIA-----QAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEHC 91 (600)
T ss_pred CHHHHC-CC-HHHHHHHHHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 776633-85-9999999999972--9842-----0476457898789999999999966988766689988989988658
Q ss_pred HHHHHH----H--HHHHHCCCHHHHHH-----HHH----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 888999----9--99986198899999-----974----03102054444531750699999999998856987999648
Q gi|254780627|r 235 EYFMWR----F--ASAIRDNCALNLKD-----SLR----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 (502)
Q Consensus 235 e~F~~~----~--~~a~~~~~~~~fr~-----~~r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd 299 (502)
T Consensus 92 ~~i~~~~~~d~~e~daas~~~v~~~r~~~~~~~~~p~~~~~kv~iidevhmls~-~afnallktleepp~~~~fi~att~ 170 (600)
T PRK09111 92 QAIMEGRHVDVIEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-AAFNALLKTLEEPPPHVKFIFATTE 170 (600)
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCH-HHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 988668998758851554578889999998605388777546999600110579-9999999876259865499996285
Q ss_pred CCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 75676136303457653021157751588899999999999886431168978989999998502788899999999999
Q gi|254780627|r 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 (502)
Q Consensus 300 ~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~ 379 (502)
T Consensus 171 --~~---k~p~ti~src~---~f~~~~~~~~~~~~~l~~i-----~~~e~~~~~~~al~~ia~~a~GS~RDaLSlLDQai 237 (600)
T PRK09111 171 --IR---KVPVTVLSRCQ---RFDLRRIEAEVLAAHLARI-----AEKEGVEVEPDALALIARAAEGSVRDGLSLLDQAI 237 (600)
T ss_pred --HH---HCCHHHHHHHH---EECCCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf --34---37589985441---2010579999999999999-----98607686677999999974898421899999999
Q ss_pred HHHHHCCCCCHHHHHHHHH
Q ss_conf 9863024687788999998
Q gi|254780627|r 380 FRHSFAPILTAEIADELLS 398 (502)
Q Consensus 380 ~~~~~~~~~~~~~~~~~l~ 398 (502)
T Consensus 238 ~~~--~~~i~~~~v~~mLG 254 (600)
T PRK09111 238 AHG--AGEVTAEQVRDMLG 254 (600)
T ss_pred HCC--CCCCCHHHHHHHHC
T ss_conf 727--98756999999868