HHsearch alignment for GI: 254780627 and conserved domain: PRK09111

>PRK09111 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.16  E-value=0.00026  Score=50.68  Aligned_cols=211  Identities=18%  Similarity=0.217  Sum_probs=126.1

Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC------CC--EEEEEH
Q ss_conf             8876328861478999999998241001365555548986278888579999999999863068------81--686469
Q gi|254780627|r  163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN------LR--VVYLTA  234 (502)
Q Consensus       163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~------~~--v~y~~~  234 (502)
T Consensus        21 ~f~~~~-gq-~~~~~~l~~~~~~--~~~~-----~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~c   91 (600)
T PRK09111         21 TFDDLI-GQ-EAMVRTLRNAFET--GRIA-----QAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEHC   91 (600)
T ss_pred             CHHHHC-CC-HHHHHHHHHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             776633-85-9999999999972--9842-----0476457898789999999999966988766689988989988658


Q ss_pred             HHHHHH----H--HHHHHCCCHHHHHH-----HHH----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             888999----9--99986198899999-----974----03102054444531750699999999998856987999648
Q gi|254780627|r  235 EYFMWR----F--ASAIRDNCALNLKD-----SLR----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD  299 (502)
Q Consensus       235 e~F~~~----~--~~a~~~~~~~~fr~-----~~r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd  299 (502)
T Consensus        92 ~~i~~~~~~d~~e~daas~~~v~~~r~~~~~~~~~p~~~~~kv~iidevhmls~-~afnallktleepp~~~~fi~att~  170 (600)
T PRK09111         92 QAIMEGRHVDVIEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-AAFNALLKTLEEPPPHVKFIFATTE  170 (600)
T ss_pred             HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCH-HHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             988668998758851554578889999998605388777546999600110579-9999999876259865499996285


Q ss_pred             CCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             75676136303457653021157751588899999999999886431168978989999998502788899999999999
Q gi|254780627|r  300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV  379 (502)
Q Consensus       300 ~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~  379 (502)
T Consensus       171 --~~---k~p~ti~src~---~f~~~~~~~~~~~~~l~~i-----~~~e~~~~~~~al~~ia~~a~GS~RDaLSlLDQai  237 (600)
T PRK09111        171 --IR---KVPVTVLSRCQ---RFDLRRIEAEVLAAHLARI-----AEKEGVEVEPDALALIARAAEGSVRDGLSLLDQAI  237 (600)
T ss_pred             --HH---HCCHHHHHHHH---EECCCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             --34---37589985441---2010579999999999999-----98607686677999999974898421899999999


Q ss_pred             HHHHHCCCCCHHHHHHHHH
Q ss_conf             9863024687788999998
Q gi|254780627|r  380 FRHSFAPILTAEIADELLS  398 (502)
Q Consensus       380 ~~~~~~~~~~~~~~~~~l~  398 (502)
T Consensus       238 ~~~--~~~i~~~~v~~mLG  254 (600)
T PRK09111        238 AHG--AGEVTAEQVRDMLG  254 (600)
T ss_pred             HCC--CCCCCHHHHHHHHC
T ss_conf             727--98756999999868