HHsearch alignment for GI: 254780627 and conserved domain: PRK09112
>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=97.38 E-value=0.0036 Score=42.54 Aligned_cols=187 Identities=16% Similarity=0.124 Sum_probs=100.7
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCC---------------
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630688---------------
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL--------------- 227 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~--------------- 227 (502)
T Consensus 21 ~~~~l-iGq~~~~~--~L~~a~~-~gRl~-----HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~ 91 (352)
T PRK09112 21 ENNRL-FGHEEARA--FLAQAYR-EGRLH-----HALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPL 91 (352)
T ss_pred CHHHH-CCHHHHHH--HHHHHHH-CCCCC-----CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
T ss_conf 46462-78699999--9999998-49965-----2465358998089999999999986699866686556788878778
Q ss_pred ----------CEEEEEHHHHHHHHHHHHHCC-CHHHHH---HHHH------HCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf ----------168646988899999998619-889999---9974------03102054444531750699999999998
Q gi|254780627|r 228 ----------RVVYLTAEYFMWRFASAIRDN-CALNLK---DSLR------NIDLLLIDDMQFLQGKLIQHEFCHLLNSL 287 (502)
Q Consensus 228 ----------~v~y~~~e~F~~~~~~a~~~~-~~~~fr---~~~r------~~DvLliDDiqfl~gk~tqee~f~~~n~l 287 (502)
T Consensus 92 ~r~i~~g~hpdl~~i~r~--~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~-~~aaNALLK~LEEP 168 (352)
T PRK09112 92 WRQIAQGAHPNLLHLTRP--FDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMN-RNAANAILKTLEEP 168 (352)
T ss_pred HHHHHCCCCCCEEEEECC--CCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHH-HHHHHHHHHHHHCC
T ss_conf 999974899995655343--220214543357779999999984548866880699981878746-99999999985348
Q ss_pred HHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 85698799964875676136303457653021157751588899999999999886431168978989999998502788
Q gi|254780627|r 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTS 367 (502)
Q Consensus 288 ~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~ 367 (502)
T Consensus 169 p~~-~~fiLit~~~-~---~ll~TI~SRCq---~~~f~pL~~~di~~~L~~i-----~~~~~~~-~~~~~~~l~~~a~GS 234 (352)
T PRK09112 169 PAR-ALFILISHSS-G---RLLPTIRSRCQ---PISLKPLDDDELKKALSHL-----GSKQGIS-AGEETEALLQRSEGS 234 (352)
T ss_pred CCC-EEEEEEECCH-H---HCHHHHHHHCC---CCCCCCCCHHHHHHHHHHH-----HHCCCCC-CHHHHHHHHHHHCCC
T ss_conf 987-4899886997-7---77689997433---2148893989999999987-----5126899-879999999870899
Q ss_pred HHHHHHHH
Q ss_conf 89999999
Q gi|254780627|r 368 GRELDGAF 375 (502)
Q Consensus 368 vR~Legal 375 (502)
T Consensus 235 ~~~Al~L~ 242 (352)
T PRK09112 235 VRKALLLL 242 (352)
T ss_pred HHHHHHHH
T ss_conf 88999874