HHsearch alignment for GI: 254780627 and conserved domain: PRK09354

>PRK09354 recA recombinase A; Provisional.
Probab=96.48  E-value=0.02  Score=37.32  Aligned_cols=98  Identities=24%  Similarity=0.341  Sum_probs=61.6

Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHHHCCCCCEEEEEHHH-HHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCH
Q ss_conf             89862788885799-999999998630688168646988-8999999986198899999974031020544445317506
Q gi|254780627|r  199 LFIHASVGLGKTHL-LQAIANASIKRQPNLRVVYLTAEY-FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI  276 (502)
Q Consensus       199 Lfi~G~~GlGKTHL-l~ai~~~~~~~~~~~~v~y~~~e~-F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~t  276 (502)
T Consensus        63 vEi~G~esSGKTtlal~~iae-aQk~--Gg~~a~iDaE~ald~~~a~~lG-------------Vd~---d~l-lv~qpd~  122 (350)
T PRK09354         63 VEIYGPESSGKTTLALHAIAE-AQKA--GGTAAFIDAEHALDPVYAKKLG-------------VDI---DNL-LVSQPDT  122 (350)
T ss_pred             EEEECCCCCCHHHHHHHHHHH-HHHC--CCCEEEEEECCCCCHHHHHHCC-------------CCH---HHE-EEECCCH
T ss_conf             999889877799999999999-9975--9947999600027988999849-------------771---571-7856867


Q ss_pred             HHHHHHHHHHHHHCCCE--EEEECC---CCHHHHC--------CCCHHHHHHH
Q ss_conf             99999999998856987--999648---7567613--------6303457653
Q gi|254780627|r  277 QHEFCHLLNSLLDSAKQ--VVAAAD---RPPSELE--------SLDPRIRSRL  316 (502)
Q Consensus       277 qee~f~~~n~l~~~gkq--iv~tsd---~~P~~l~--------~l~~rL~SR~  316 (502)
T Consensus       123 ~Eqal~i~e~Lvrsg~vd~IVvDSVaAL~pk~Eieg~mgd~~vG~qARlmSqa  175 (350)
T PRK09354        123 GEQALEIADALVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQA  175 (350)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             99999999999854884189982533457688873133542263899999999