HHsearch alignment for GI: 254780627 and conserved domain: PRK09354
>PRK09354 recA recombinase A; Provisional.
Probab=96.48 E-value=0.02 Score=37.32 Aligned_cols=98 Identities=24% Similarity=0.341 Sum_probs=61.6
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHHHCCCCCEEEEEHHH-HHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCH
Q ss_conf 89862788885799-999999998630688168646988-8999999986198899999974031020544445317506
Q gi|254780627|r 199 LFIHASVGLGKTHL-LQAIANASIKRQPNLRVVYLTAEY-FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI 276 (502)
Q Consensus 199 Lfi~G~~GlGKTHL-l~ai~~~~~~~~~~~~v~y~~~e~-F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~t 276 (502)
T Consensus 63 vEi~G~esSGKTtlal~~iae-aQk~--Gg~~a~iDaE~ald~~~a~~lG-------------Vd~---d~l-lv~qpd~ 122 (350)
T PRK09354 63 VEIYGPESSGKTTLALHAIAE-AQKA--GGTAAFIDAEHALDPVYAKKLG-------------VDI---DNL-LVSQPDT 122 (350)
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHHC--CCCEEEEEECCCCCHHHHHHCC-------------CCH---HHE-EEECCCH
T ss_conf 999889877799999999999-9975--9947999600027988999849-------------771---571-7856867
Q ss_pred HHHHHHHHHHHHHCCCE--EEEECC---CCHHHHC--------CCCHHHHHHH
Q ss_conf 99999999998856987--999648---7567613--------6303457653
Q gi|254780627|r 277 QHEFCHLLNSLLDSAKQ--VVAAAD---RPPSELE--------SLDPRIRSRL 316 (502)
Q Consensus 277 qee~f~~~n~l~~~gkq--iv~tsd---~~P~~l~--------~l~~rL~SR~ 316 (502)
T Consensus 123 ~Eqal~i~e~Lvrsg~vd~IVvDSVaAL~pk~Eieg~mgd~~vG~qARlmSqa 175 (350)
T PRK09354 123 GEQALEIADALVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQA 175 (350)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999854884189982533457688873133542263899999999