HHsearch alignment for GI: 254780627 and conserved domain: PRK09376

>PRK09376 rho transcription termination factor Rho; Provisional.
Probab=94.57  E-value=0.054  Score=34.19  Aligned_cols=88  Identities=24%  Similarity=0.320  Sum_probs=51.8

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCC---C-C
Q ss_conf             98627888857999999999986306881686469888999999986198899999974031020544445317---5-0
Q gi|254780627|r  200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG---K-L  275 (502)
Q Consensus       200 fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~g---k-~  275 (502)
T Consensus       173 LIVAPPkaGKT~lLq~IA~aI~~N~Pe~~liVLLIDE---------RPEEVTdm~r~v~-~eV~aS---tfD~~~~~H~~  239 (416)
T PRK09376        173 LIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDE---------RPEEVTDMQRSVK-GEVVAS---TFDEPAERHVQ  239 (416)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECC---------CCHHHHHHHHHCC-EEEEEE---CCCCCHHHHHH
T ss_conf             3756998754799999999998569971999999048---------9347778775046-189997---79998789999


Q ss_pred             HHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             6999999999988569879996487
Q gi|254780627|r  276 IQHEFCHLLNSLLDSAKQVVAAADR  300 (502)
Q Consensus       276 tqee~f~~~n~l~~~gkqiv~tsd~  300 (502)
T Consensus       240 vae~~lerAkRlvE~G~DVvillDS  264 (416)
T PRK09376        240 VAEMVIEKAKRLVEHGKDVVILLDS  264 (416)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             9999999999998769978999731