HHsearch alignment for GI: 254780627 and conserved domain: PRK09376
>PRK09376 rho transcription termination factor Rho; Provisional.
Probab=94.57 E-value=0.054 Score=34.19 Aligned_cols=88 Identities=24% Similarity=0.320 Sum_probs=51.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCC---C-C
Q ss_conf 98627888857999999999986306881686469888999999986198899999974031020544445317---5-0
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG---K-L 275 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~g---k-~ 275 (502)
T Consensus 173 LIVAPPkaGKT~lLq~IA~aI~~N~Pe~~liVLLIDE---------RPEEVTdm~r~v~-~eV~aS---tfD~~~~~H~~ 239 (416)
T PRK09376 173 LIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDE---------RPEEVTDMQRSVK-GEVVAS---TFDEPAERHVQ 239 (416)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECC---------CCHHHHHHHHHCC-EEEEEE---CCCCCHHHHHH
T ss_conf 3756998754799999999998569971999999048---------9347778775046-189997---79998789999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 6999999999988569879996487
Q gi|254780627|r 276 IQHEFCHLLNSLLDSAKQVVAAADR 300 (502)
Q Consensus 276 tqee~f~~~n~l~~~gkqiv~tsd~ 300 (502)
T Consensus 240 vae~~lerAkRlvE~G~DVvillDS 264 (416)
T PRK09376 240 VAEMVIEKAKRLVEHGKDVVILLDS 264 (416)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9999999999998769978999731