HHsearch alignment for GI: 254780627 and conserved domain: PRK10820
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional.
Probab=98.85 E-value=4.3e-07 Score=70.41 Aligned_cols=281 Identities=17% Similarity=0.157 Sum_probs=155.1
Q ss_pred CCCHHHHHHHCCCCCHHHH--HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf 7644788763288614789--99999998241001365555548986278888579999999999863068816864698
Q gi|254780627|r 158 LDSRFVFSTFIEGSSNRVA--LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 (502)
Q Consensus 158 LNpryTFDnFVVG~sN~lA--~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e 235 (502)
T Consensus 197 ~~~~~~F~~ii-g~S~~m~~v~~~a~r~A~~d---------~pVLI~GEsGTGKellAraIH~~S~R~--~~pFv~vnC~ 264 (513)
T PRK10820 197 VQDVSAFSQIV-AVSPKMKHVVEQARKLAMLS---------APLLITGDTGTGKDLFAYACHLASPRA--KKPYLALNCA 264 (513)
T ss_pred CCCCCCHHHHE-ECCHHHHHHHHHHHHHHCCC---------CCEEEECCCCCCHHHHHHHHHHCCCCC--CCCCEEEECC
T ss_conf 25416877751-08999999999999985989---------988998989824999999999668878--9982688899
Q ss_pred HHHHHHHHHHHCCC-HHHHHHHH--HHCCHHHHHHHHHHCCCCHHHHHHHHHHHH----------HHCCCEEEEECCCCH
Q ss_conf 88999999986198-89999997--403102054444531750699999999998----------856987999648756
Q gi|254780627|r 236 YFMWRFASAIRDNC-ALNLKDSL--RNIDLLLIDDMQFLQGKLIQHEFCHLLNSL----------LDSAKQVVAAADRPP 302 (502)
Q Consensus 236 ~F~~~~~~a~~~~~-~~~fr~~~--r~~DvLliDDiqfl~gk~tqee~f~~~n~l----------~~~gkqiv~tsd~~P 302 (502)
T Consensus 265 alp~~l~eseLFG~a~~~~~G~fe~A~gGTLfLdEI~~l~-~~~Q~kLLr~Lq~~~~~rvG~~~~~~~dvRiIaaT~~dL 343 (513)
T PRK10820 265 SIPEDAVESELFGHAPEGKKGFFEQANGGSVLLDEIGEMS-PRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNL 343 (513)
T ss_pred CCCHHHHHHHHCCCCCCCCCCCEEECCCCEEEEECHHHCC-HHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEECCCHHH
T ss_conf 8996789998638766688975578589889997836599-999999999986897996599853567789996265309
Q ss_pred HHHC---CCCHHHHHHHHCCEEEEECCCCHHHHHH----HHHHHHHHHHHHCCC---CCCCHHHHHHHH-HHCCCCHHHH
Q ss_conf 7613---6303457653021157751588899999----999999886431168---978989999998-5027888999
Q gi|254780627|r 303 SELE---SLDPRIRSRLQGGVSVPLGLHDYEMRFS----ILKNRLAISQKEDPK---LNINEEVLMHVA-RTVTTSGREL 371 (502)
Q Consensus 303 ~~l~---~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~----Il~~k~~~~~~~~~~---~~l~~~v~~~la-~~~~~~vR~L 371 (502)
T Consensus 344 ~~lv~~g~FReDLyyRL~---v~~I~lPpLReR~eDI~~L~~~fl~~~-~~~~g~~~~~ls~~a~~~L~~y~WPGNVREL 419 (513)
T PRK10820 344 VELVQKGLFREDLYYRLN---VLTLNLPPLRDCPQDIMPLTELFVARF-ADEQGVPRPKLSADLSTVLTRYGWPGNVRQL 419 (513)
T ss_pred HHHHHCCCCCHHHHHHHH---CCCCCCCCHHHCHHHHHHHHHHHHHHH-HHHCCCCCCCCCHHHHHHHHHCCCCCHHHHH
T ss_conf 999872985088999861---672558883446556999999999999-9975999898479999999708999799999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCHHHCHHHHHHHHHHHH
Q ss_conf 99999999986302468778899999876303788757989999999998099999940888774014457999999998
Q gi|254780627|r 372 DGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 (502)
Q Consensus 372 egal~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~I~~~V~~~~~i~~~~l~s~~R~~~i~~~RqiamyL~r~ 451 (502)
T Consensus 420 ~n~iera~~~~~-g~~i~~~di~--lp~~~~--~~~~~~~~--------~~~~sL~e~~~-------~~Er~~l~~l~~~ 479 (513)
T PRK10820 420 KNAIYRALTQLE-GYELRPQDIL--LPDYDA--ATVAVGED--------AMEGSLDDITS-------RFERSVLTQLYRN 479 (513)
T ss_pred HHHHHHHHHHCC-CCCCCHHHCC--CCCCCC--CCCCCCCC--------CCCCCHHHHHH-------HHHHHHHHHHHHH
T ss_conf 999999999579-9853499828--854344--44676644--------44799999999-------9999999999987
Q ss_pred HCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 515687899988479843799999999
Q gi|254780627|r 452 MTPRSFPEIGRRFGDRDHTTVLHAVRK 478 (502)
Q Consensus 452 ~t~~s~~~IG~~fg~rdHsTV~~a~~k 478 (502)
T Consensus 480 ~--~~~~kaAk~LG-ISrttL~~Klkk 503 (513)
T PRK10820 480 Y--PSTRKLAKRLG-VSHTAIANKLRE 503 (513)
T ss_pred C--CCHHHHHHHHC-CCHHHHHHHHHH
T ss_conf 8--89999999979-989999999998