HHsearch alignment for GI: 254780627 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=98.70 E-value=7.5e-06 Score=61.61 Aligned_cols=235 Identities=17% Similarity=0.259 Sum_probs=143.5
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHC-C----CCCEEEEEHHHHHHHH
Q ss_conf 3288614789999999982410013655555489862788885799999999998630-6----8816864698889999
Q gi|254780627|r 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ-P----NLRVVYLTAEYFMWRF 241 (502)
Q Consensus 167 FVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~-~----~~~v~y~~~e~F~~~~ 241 (502)
T Consensus 187 PviGR~~Ei~-----r~i~iL~Rr---~KNNpi-LvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~Ldl~~----L 253 (758)
T PRK11034 187 PLIGREKELE-----RAIQVLCRR---RKNNPL-LVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS----L 253 (758)
T ss_pred CCCCCHHHHH-----HHHHHHHHH---CCCCCE-EECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHH----H
T ss_conf 8738489999-----999999763---258960-21699986999999999999738997655898899845877----8
Q ss_pred HHHHHCCCHHHHHHHH----------HHCCHHHHHHHHHHCCC-C---HHHHHHHHHHHHHHCCCEEEEECCCCHHHHC-
Q ss_conf 9998619889999997----------40310205444453175-0---6999999999988569879996487567613-
Q gi|254780627|r 242 ASAIRDNCALNLKDSL----------RNIDLLLIDDMQFLQGK-L---IQHEFCHLLNSLLDSAKQVVAAADRPPSELE- 306 (502)
Q Consensus 242 ~~a~~~~~~~~fr~~~----------r~~DvLliDDiqfl~gk-~---tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~- 306 (502)
T Consensus 254 iAGtkyR--GefEeRlk~vi~e~~~~~~~-ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~LarG~l~~IgaTT-~~EYrk 329 (758)
T PRK11034 254 LAGTKYR--GDFEKRFKALLKQLEQDTNS-ILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTT-YQEFSN 329 (758)
T ss_pred HCCCCCC--HHHHHHHHHHHHHHHHCCCE-EEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC-HHHHHH
T ss_conf 6168641--54999999999999857985-9998043442268876777646788745787469723999437-799875
Q ss_pred CC--CHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 63--0345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 307 SL--DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 307 ~l--~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
T Consensus 330 ~iekD~AL~RRFq---~V~V~EPs~e~t~~IL~gl-~~~yE~~H~v~~~d~al~~av~Ls~-----------rYi~-dr~ 393 (758)
T PRK11034 330 IFEKDRALARRFQ---KIDITEPSIEETVQIINGL-KPKYEAHHDVRYTAKAVRAAVELAV-----------KYIN-DRH 393 (758)
T ss_pred CCCCCHHHHHCCC---EEECCCCCHHHHHHHHHHH-HHHHHHCCCCEECCHHHHHHHHHHH-----------HHHC-CCC
T ss_conf 0321478884282---6531899989999999989-9987323695774389999999997-----------6502-688
Q ss_pred CCCCCHHHHHHHHHHH--HC-CCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 2468778899999876--30-37887579899999999980999999408887
Q gi|254780627|r 385 APILTAEIADELLSHL--VN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 (502)
Q Consensus 385 ~~~~~~~~~~~~l~~~--~~-~~~~~~i~~~~I~~~V~~~~~i~~~~l~s~~R 434 (502)
T Consensus 394 lPDKAIdllDea~a~~~l~~~~~~~~~v~~~di~~vv~~~t~ip~~~~~~~~~ 446 (758)
T PRK11034 394 LPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDR 446 (758)
T ss_pred CCHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 96199999999988875134566316589999999998750360767767799