HHsearch alignment for GI: 254780627 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=98.00 E-value=0.00021 Score=51.27 Aligned_cols=217 Identities=14% Similarity=0.210 Sum_probs=124.3
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHH--HH----CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 47887632886147899999999--82----4100136555554898627888857999999999986306881686469
Q gi|254780627|r 161 RFVFSTFIEGSSNRVALTAAQSI--AE----VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 (502)
Q Consensus 161 ryTFDnFVVG~sN~lA~aAAkaV--Ae----~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~ 234 (502)
T Consensus 453 e~~l~~~viGQ~~Ai~-~v~~ai~~~raGL~~~~rPi-----gsFlf~GPTGVGKTElak~LA~~L-----~~~lir~DM 521 (758)
T PRK11034 453 GDRLKMLVFGQDKAIE-ALTEAIKMSRAGLGHEHKPV-----GSFLFAGPTGVGKTEVTVQLSKAL-----GIELLRFDM 521 (758)
T ss_pred HHHHHHHHHCCHHHHH-HHHHHHHHHHCCCCCCCCCC-----EEEEEECCCCCCHHHHHHHHHHHH-----HHHHHCCCH
T ss_conf 9998778745499999-99999999863888999970-----589997899877799999999998-----667721426
Q ss_pred HHHHHHH-HHHHH----------C-CCH-HHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHHCCC-------
Q ss_conf 8889999-99986----------1-988-999999740310205444453175069999999999--885698-------
Q gi|254780627|r 235 EYFMWRF-ASAIR----------D-NCA-LNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNS--LLDSAK------- 292 (502)
Q Consensus 235 e~F~~~~-~~a~~----------~-~~~-~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~--l~~~gk------- 292 (502)
T Consensus 522 SEy~e~hsvsrLiGaPPGYVGy~eGG~Lte~Vr--~~PysVvL~DEIEK-AhpdV~nilLQvlD~G~LtD~~Gr~vdF~N 598 (758)
T PRK11034 522 SEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI--KHPHAVLLLDEIEK-AHPDVFNLLLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_pred HHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHH--HCCCEEEEEHHHHH-HCHHHHHHHHHHCCCCCCCCCCCCEEECEE
T ss_conf 653120147774489986667677770128787--39877997336756-398999988732377830179999884400
Q ss_pred -EEEEECCCCHHHH---------------------CCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHH--H--
Q ss_conf -7999648756761---------------------3630345765302115775158889999999999988643--1--
Q gi|254780627|r 293 -QVVAAADRPPSEL---------------------ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK--E-- 346 (502)
Q Consensus 293 -qiv~tsd~~P~~l---------------------~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~--~-- 346 (502)
T Consensus 599 tiIImTSN~Ga~~~~~~~~gf~~~~~~~~~~~~l~~~F~PEFlNRiD~--ii~F~~L~~~~l~~Iv~~~l~~l~~rL~~~ 676 (758)
T PRK11034 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDN--IIWFDHLSTDVIHQVVDKFIVELQAQLDQK 676 (758)
T ss_pred EEEEEECCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCE--EEEECCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 199982561748786421475542035999999995479867723674--786388999999999999999999999978
Q ss_pred CCCCCCCHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 168978989999998502788---89999999999998630246877889999987630
Q gi|254780627|r 347 DPKLNINEEVLMHVARTVTTS---GRELDGAFNQLVFRHSFAPILTAEIADELLSHLVN 402 (502)
Q Consensus 347 ~~~~~l~~~v~~~la~~~~~~---vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~ 402 (502)
T Consensus 677 ~i~l~~~~~a~~~l~~~gyd~~~GARpl~R~I~~~i---------~~~La~~il~g~~~ 726 (758)
T PRK11034 677 GVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNL---------KKPLANELLFGSLV 726 (758)
T ss_pred CCEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---------HHHHHHHHHCCCCC
T ss_conf 985998899999999848894537112889999998---------89999999729888