HHsearch alignment for GI: 254780627 and conserved domain: PRK11331
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional.
Probab=93.60 E-value=0.13 Score=31.58 Aligned_cols=87 Identities=17% Similarity=0.267 Sum_probs=51.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE------HHHHHHHHHH-----HHHCCCHHHHHHHHH----HCCHH
Q ss_conf 89862788885799999999998630688168646------9888999999-----986198899999974----03102
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT------AEYFMWRFAS-----AIRDNCALNLKDSLR----NIDLL 263 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~------~e~F~~~~~~-----a~~~~~~~~fr~~~r----~~DvL 263 (502)
T Consensus 197 vIL~G~pGtGKT~lAk~lA~~l~g~~~~~rv~~VqfhpsysYEDfi~Gyrp~~~gf~~~~G~f~~~~~~A~~~p~~~y~~ 276 (459)
T PRK11331 197 IILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVF 276 (459)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCEEE
T ss_conf 79658999887899999999970788778468998358866178764605688861326836999999998498987699
Q ss_pred HHHHHHHHCCC-CHHHHHHHHHHH
Q ss_conf 05444453175-069999999999
Q gi|254780627|r 264 LIDDMQFLQGK-LIQHEFCHLLNS 286 (502)
Q Consensus 264 liDDiqfl~gk-~tqee~f~~~n~ 286 (502)
T Consensus 277 iideinr-~~~~~~fgel~~liE~ 299 (459)
T PRK11331 277 IIDEINR-ANLSKVFGEVMMLMEH 299 (459)
T ss_pred EEEHHHC-CCHHHHHHHHHHHHHH
T ss_conf 9843203-3889999999999641