HHsearch alignment for GI: 254780627 and conserved domain: PRK11608
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional.
Probab=98.72 E-value=5e-07 Score=69.94 Aligned_cols=201 Identities=16% Similarity=0.168 Sum_probs=122.9
Q ss_pred HHCCCCCHHHH--HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHH
Q ss_conf 63288614789--9999999824100136555554898627888857999999999986306881686469888999999
Q gi|254780627|r 166 TFIEGSSNRVA--LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFAS 243 (502)
Q Consensus 166 nFVVG~sN~lA--~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~ 243 (502)
T Consensus 6 ~~liG~S~~m~~v~~~~~~~A~~~---------~pVLI~GE~GtGK~~~Ar~IH~~-S-~r~~~pfi~v~C~~l~~~~~e 74 (325)
T PRK11608 6 DNLLGEANSFLEVLEQVSHLAPLD---------KPVLIIGERGTGKELIASRLHYL-S-SRWQGPFISLNCAALNENLLD 74 (325)
T ss_pred CCCEECCHHHHHHHHHHHHHHCCC---------CCEEEECCCCCCHHHHHHHHHHC-C-CCCCCCCEEEECCCCCHHHHH
T ss_conf 998589999999999999996889---------99898898983799999999965-8-867999778877989977889
Q ss_pred HHHCC-CHHHH-------HHHHH--HCCHHHHHHHHHHCCCCHHHHHHHHHHH--HH--------HCCCEEEEECCCCHH
Q ss_conf 98619-88999-------99974--0310205444453175069999999999--88--------569879996487567
Q gi|254780627|r 244 AIRDN-CALNL-------KDSLR--NIDLLLIDDMQFLQGKLIQHEFCHLLNS--LL--------DSAKQVVAAADRPPS 303 (502)
Q Consensus 244 a~~~~-~~~~f-------r~~~r--~~DvLliDDiqfl~gk~tqee~f~~~n~--l~--------~~gkqiv~tsd~~P~ 303 (502)
T Consensus 75 ~~LFG~~~g~~~~~~~~~~g~le~a~gGTL~L~eI~~l~-~~~Q~~Ll~~l~~~~~~r~g~~~~~~~~~RiIa~t~~~l~ 153 (325)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAP-MLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLP 153 (325)
T ss_pred HHHCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECHHHCC-HHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEECCCHHHH
T ss_conf 987277556767753246873435689869973745479-9999999999864908857998766564688713322089
Q ss_pred HHC---CCCHHHHHHHHCCEEEEECCCCHHHHHH----HHHHHHHHHHHHCCCC----CCCHHHHHHH-HHHCCCCHHHH
Q ss_conf 613---6303457653021157751588899999----9999998864311689----7898999999-85027888999
Q gi|254780627|r 304 ELE---SLDPRIRSRLQGGVSVPLGLHDYEMRFS----ILKNRLAISQKEDPKL----NINEEVLMHV-ARTVTTSGREL 371 (502)
Q Consensus 304 ~l~---~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~----Il~~k~~~~~~~~~~~----~l~~~v~~~l-a~~~~~~vR~L 371 (502)
T Consensus 154 ~lv~~g~fr~dLy~rL~---~~~I~lPpLReR~eDI~~L~~~fl~~-~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL 229 (325)
T PRK11608 154 AMVNEGTFRADLLDRLA---FDVVQLPPLRERQSDIMLMAEHFAIQ-MCRELGLPLFPGFTERARETLLNYRWPGNIREL 229 (325)
T ss_pred HHHHHCCCHHHHHHHHH---HHHCCCCCHHHCCCCHHHHHHHHHHH-HHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHH
T ss_conf 99983956799985653---01115868454710199999999999-999829998888899999999619999659999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999986
Q gi|254780627|r 372 DGAFNQLVFRH 382 (502)
Q Consensus 372 egal~~l~~~~ 382 (502)
T Consensus 230 ~n~ierav~~~ 240 (325)
T PRK11608 230 KNVVERSVYRH 240 (325)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999856