HHsearch alignment for GI: 254780627 and conserved domain: PRK11784
>PRK11784 tRNA 2-selenouridine synthase; Provisional.
Probab=96.00 E-value=0.085 Score=32.79 Aligned_cols=106 Identities=26% Similarity=0.283 Sum_probs=66.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCC-H
Q ss_conf 489862788885799999999998630688168646988899999998619889999997403102054444531750-6
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~-t 276 (502)
T Consensus 139 ~~vl~G~TG~GKT~lL~~L~~~------G~~v--iDLEglA~HRG--------S~FG~---------------~~~~QPs 187 (333)
T PRK11784 139 LVVLGGMTGSGKTRLLQALANA------GAQV--LDLEGLANHRG--------SSFGR---------------LGGPQPS 187 (333)
T ss_pred CEEEECCCCCCHHHHHHHHHHC------CCCE--ECHHHHHHCCC--------CCCCC---------------CCCCCCC
T ss_conf 5998678887789999999975------9974--33898863256--------42358---------------8999987
Q ss_pred HHHH----HHHHHHHHHCCCEEEEECC-CCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHH
Q ss_conf 9999----9999998856987999648-756761363034576530211577515888999999999
Q gi|254780627|r 277 QHEF----CHLLNSLLDSAKQVVAAAD-RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 (502)
Q Consensus 277 qee~----f~~~n~l~~~gkqiv~tsd-~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~ 338 (502)
T Consensus 188 Qk~FE~~L~~~l~~~~--~~~i~vE~ESr~IG~~-~iP~~l~~~M~~a~~i~i~~~-~e~Rv~~l~~ 250 (333)
T PRK11784 188 QKDFENLLAEALLKLD--PAPIVVEDESRRIGRV-HLPEALYEAMQAAPIVEVEAP-LEERVERLLE 250 (333)
T ss_pred HHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCC-CCCHHHHHHHHHCCEEEEECC-HHHHHHHHHH
T ss_conf 8999999999998089--9856996010030671-389999999962988999899-9999999999