HHsearch alignment for GI: 254780627 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=99.54 E-value=8.5e-12 Score=103.84 Aligned_cols=284 Identities=18% Similarity=0.205 Sum_probs=171.1
Q ss_pred HHHHHCCCCCHHHHH-HHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH
Q ss_conf 887632886147899-9999998241001365555548986278888579999999999863068816864698889999
Q gi|254780627|r 163 VFSTFIEGSSNRVAL-TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 (502)
Q Consensus 163 TFDnFVVG~sN~lA~-aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~ 241 (502)
T Consensus 11 ~lde~v-GQ~hllg~~~~L~~~i~~-~~~------~s~Il~GPPG~GKTTlA~iiA~~~-----~~~f~~lnA~~~g--- 74 (417)
T PRK13342 11 TLDEVV-GQEHLLGPGKPLRRMIEA-GRL------SSMILWGPPGTGKTTLARIIAGAT-----DAEFEALSAVTSG--- 74 (417)
T ss_pred CHHHHC-CCHHHHCCCHHHHHHHHC-CCC------CEEEEECCCCCCHHHHHHHHHHHH-----CCCEEEEECCCCC---
T ss_conf 888857-987760897199999976-999------759988969998999999999986-----8988996141038---
Q ss_pred HHHHHCCCHHHHHHH-HHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCC-CHHHHCCCCHHHHHHHHCC
Q ss_conf 999861988999999-74031020544445317506999999999988569879996487-5676136303457653021
Q gi|254780627|r 242 ASAIRDNCALNLKDS-LRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR-PPSELESLDPRIRSRLQGG 319 (502)
Q Consensus 242 ~~a~~~~~~~~fr~~-~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~-~P~~l~~l~~rL~SR~~~G 319 (502)
T Consensus 75 v~dir-~ii~~a~~~~~~~~tilfiDEIHRfn-K~QQD~LLp~vE----~g~iiLIgATTENP~--f~in~aLlSRc~-- 144 (417)
T PRK13342 75 VKDLR-EVIEEAKQSRLGRRTILFIDEIHRFN-KAQQDALLPHVE----DGTITLIGATTENPS--FEVNPALLSRAQ-- 144 (417)
T ss_pred HHHHH-HHHHHHHHHHCCCCEEEEEECHHHCC-HHHHHHHHHHHH----CCCEEEEEECCCCCH--HHCCHHHHHHHH--
T ss_conf 89999-99999886314896599997820058-899999987511----265699974157922--534898985657--
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 15775158889999999999988643116897898999999850278889999999999998630246877889999987
Q gi|254780627|r 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSH 399 (502)
Q Consensus 320 l~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~ 399 (502)
T Consensus 145 -vf~l~~L~~~di~~iL~ral~~e~~~~~~i~i~~~al~~i~~~s~GDaR~aLN~LE~a~~~~~~~~~i~~~~~~~~~~~ 223 (417)
T PRK13342 145 -VFELKPLSEEDLEQLLKRALEDERGLGRKLELDDEALDALARLADGDARRALNLLELAAAAAAGGEVITLELLEEALQR 223 (417)
T ss_pred -HEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf -0020589999999999999987743378877699999999981498599999999999852589973489999999844
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCHHH-CHHHHHH-----HHHHHHHCCCCHHHHHHHHCCCCHHHHH
Q ss_conf 630378875798999999999809999994088877401-4457999-----9999985156878999884798437999
Q gi|254780627|r 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV-VRPRQVA-----MYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 (502)
Q Consensus 400 ~~~~~~~~~i~~~~I~~~V~~~~~i~~~~l~s~~R~~~i-~~~Rqia-----myL~r~~t~~s~~~IG~~fg~rdHsTV~ 473 (502)
T Consensus 224 ~~~~yDk~gd~HYd~iSAf-------~KSiRGSDpdAAlyyLarml~~GEDp~~IaRRLii~AsEDIGlAdP-~al~~a~ 295 (417)
T PRK13342 224 RAARYDKDGDEHYDLISAL-------HKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADP-NALQVAV 295 (417)
T ss_pred CCCCCCCCCCHHHHHHHHH-------HHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCH-HHHHHHH
T ss_conf 1035777863478999999-------9985169954899999999975999799999999988544036787-8999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780627|r 474 HAVRKVEK 481 (502)
Q Consensus 474 ~a~~ki~~ 481 (502)
T Consensus 296 ~a~~a~~~ 303 (417)
T PRK13342 296 AAADAVER 303 (417)
T ss_pred HHHHHHHH
T ss_conf 99999998