HHsearch alignment for GI: 254780627 and conserved domain: PRK13342

>PRK13342 recombination factor protein RarA; Reviewed.
Probab=99.54  E-value=8.5e-12  Score=103.84  Aligned_cols=284  Identities=18%  Similarity=0.205  Sum_probs=171.1

Q ss_pred             HHHHHCCCCCHHHHH-HHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH
Q ss_conf             887632886147899-9999998241001365555548986278888579999999999863068816864698889999
Q gi|254780627|r  163 VFSTFIEGSSNRVAL-TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF  241 (502)
Q Consensus       163 TFDnFVVG~sN~lA~-aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~  241 (502)
T Consensus        11 ~lde~v-GQ~hllg~~~~L~~~i~~-~~~------~s~Il~GPPG~GKTTlA~iiA~~~-----~~~f~~lnA~~~g---   74 (417)
T PRK13342         11 TLDEVV-GQEHLLGPGKPLRRMIEA-GRL------SSMILWGPPGTGKTTLARIIAGAT-----DAEFEALSAVTSG---   74 (417)
T ss_pred             CHHHHC-CCHHHHCCCHHHHHHHHC-CCC------CEEEEECCCCCCHHHHHHHHHHHH-----CCCEEEEECCCCC---
T ss_conf             888857-987760897199999976-999------759988969998999999999986-----8988996141038---


Q ss_pred             HHHHHCCCHHHHHHH-HHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCC-CHHHHCCCCHHHHHHHHCC
Q ss_conf             999861988999999-74031020544445317506999999999988569879996487-5676136303457653021
Q gi|254780627|r  242 ASAIRDNCALNLKDS-LRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR-PPSELESLDPRIRSRLQGG  319 (502)
Q Consensus       242 ~~a~~~~~~~~fr~~-~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~-~P~~l~~l~~rL~SR~~~G  319 (502)
T Consensus        75 v~dir-~ii~~a~~~~~~~~tilfiDEIHRfn-K~QQD~LLp~vE----~g~iiLIgATTENP~--f~in~aLlSRc~--  144 (417)
T PRK13342         75 VKDLR-EVIEEAKQSRLGRRTILFIDEIHRFN-KAQQDALLPHVE----DGTITLIGATTENPS--FEVNPALLSRAQ--  144 (417)
T ss_pred             HHHHH-HHHHHHHHHHCCCCEEEEEECHHHCC-HHHHHHHHHHHH----CCCEEEEEECCCCCH--HHCCHHHHHHHH--
T ss_conf             89999-99999886314896599997820058-899999987511----265699974157922--534898985657--


Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             15775158889999999999988643116897898999999850278889999999999998630246877889999987
Q gi|254780627|r  320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSH  399 (502)
Q Consensus       320 l~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~  399 (502)
T Consensus       145 -vf~l~~L~~~di~~iL~ral~~e~~~~~~i~i~~~al~~i~~~s~GDaR~aLN~LE~a~~~~~~~~~i~~~~~~~~~~~  223 (417)
T PRK13342        145 -VFELKPLSEEDLEQLLKRALEDERGLGRKLELDDEALDALARLADGDARRALNLLELAAAAAAGGEVITLELLEEALQR  223 (417)
T ss_pred             -HEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             -0020589999999999999987743378877699999999981498599999999999852589973489999999844


Q ss_pred             HHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCHHH-CHHHHHH-----HHHHHHHCCCCHHHHHHHHCCCCHHHHH
Q ss_conf             630378875798999999999809999994088877401-4457999-----9999985156878999884798437999
Q gi|254780627|r  400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV-VRPRQVA-----MYLSKIMTPRSFPEIGRRFGDRDHTTVL  473 (502)
Q Consensus       400 ~~~~~~~~~i~~~~I~~~V~~~~~i~~~~l~s~~R~~~i-~~~Rqia-----myL~r~~t~~s~~~IG~~fg~rdHsTV~  473 (502)
T Consensus       224 ~~~~yDk~gd~HYd~iSAf-------~KSiRGSDpdAAlyyLarml~~GEDp~~IaRRLii~AsEDIGlAdP-~al~~a~  295 (417)
T PRK13342        224 RAARYDKDGDEHYDLISAL-------HKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADP-NALQVAV  295 (417)
T ss_pred             CCCCCCCCCCHHHHHHHHH-------HHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCH-HHHHHHH
T ss_conf             1035777863478999999-------9985169954899999999975999799999999988544036787-8999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254780627|r  474 HAVRKVEK  481 (502)
Q Consensus       474 ~a~~ki~~  481 (502)
T Consensus       296 ~a~~a~~~  303 (417)
T PRK13342        296 AAADAVER  303 (417)
T ss_pred             HHHHHHHH
T ss_conf             99999998