HHsearch alignment for GI: 254780627 and conserved domain: PRK13531
>PRK13531 regulatory ATPase RavA; Provisional.
Probab=96.34 E-value=0.014 Score=38.44 Aligned_cols=264 Identities=18% Similarity=0.195 Sum_probs=125.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCE------EEEEHHH-HHHHHHHHHHC-CCHHHHHH-HHHHCCHHHHHH
Q ss_conf 548986278888579999999999863068816------8646988-89999999861-98899999-974031020544
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRV------VYLTAEY-FMWRFASAIRD-NCALNLKD-SLRNIDLLLIDD 267 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v------~y~~~e~-F~~~~~~a~~~-~~~~~fr~-~~r~~DvLliDD 267 (502)
T Consensus 40 ehvlllGPPGtAKS~larrl~~~~~----~a~~FeyLltRFstPeElFGP~si~~Lk~~g~y~R~t~G~LP~A~iaFLDE 115 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFAFQ----HARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDE 115 (498)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHC----CCHHHHHHHHCCCCHHHHCCCCCHHHHHHCCEEEEECCCCCCCCEEEHHHH
T ss_conf 9469888995138899999999855----740899998746988885383329987117848972267588661315787
Q ss_pred HHHHCCCCHHHHHHHHHHHHH-HCCCE--------EEEECCCCHHH---HCCCCHHHHHHHHCCEEEE-----------E
Q ss_conf 445317506999999999988-56987--------99964875676---1363034576530211577-----------5
Q gi|254780627|r 268 MQFLQGKLIQHEFCHLLNSLL-DSAKQ--------VVAAADRPPSE---LESLDPRIRSRLQGGVSVP-----------L 324 (502)
Q Consensus 268 iqfl~gk~tqee~f~~~n~l~-~~gkq--------iv~tsd~~P~~---l~~l~~rL~SR~~~Gl~~~-----------i 324 (502)
T Consensus 116 I-fKansAILNtLLtilNEr~f~nG~~~~~vPL~~li~ASNElP~~~~~L~AlyDRfL~R~~v~~v~~~~nF~~lL~s~~ 194 (498)
T PRK13531 116 I-WKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLVSQQ 194 (498)
T ss_pred H-HHCCHHHHHHHHHHHHHHEECCCCCEECCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHCCCC
T ss_conf 8-614889999999986464034798313044688643046799998407888876441022313167667999861788
Q ss_pred CCCC--HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH---CC-------CCHHHHHHHHHHHHHHHHHCC-C-CCH
Q ss_conf 1588--89999999999988643116897898999999850---27-------888999999999999863024-6-877
Q gi|254780627|r 325 GLHD--YEMRFSILKNRLAISQKEDPKLNINEEVLMHVART---VT-------TSGRELDGAFNQLVFRHSFAP-I-LTA 390 (502)
Q Consensus 325 ~~Pd--~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~---~~-------~~vR~Legal~~l~~~~~~~~-~-~~~ 390 (502)
T Consensus 195 ~~~~~~i~~~l~is~eE~~~wq~~i~~V~lpd~v~e~I~~lR~~l~~~e~~~YVSDRRWkKav~LLkasAf~~GR~eV~- 273 (498)
T PRK13531 195 DENDNPVPASLQVTDEEYEQWQKEIGKITLPDHVFELIFQLRQQLDALPDAPYVSDRRWKKAIRLLQASAFFSGRDAVA- 273 (498)
T ss_pred CCCCCCCCCCCEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCC-
T ss_conf 6444578855711799999999862021387999999999999985156787557668999999999987516955377-
Q ss_pred HHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCHHHCHHHHHHHHHHH---HHCCCCHHHHHHHHCC
Q ss_conf 88999998763037-8875798999999999809999994088877401445799999999---8515687899988479
Q gi|254780627|r 391 EIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK---IMTPRSFPEIGRRFGD 466 (502)
Q Consensus 391 ~~~~~~l~~~~~~~-~~~~i~~~~I~~~V~~~~~i~~~~l~s~~R~~~i~~~RqiamyL~r---~~t~~s~~~IG~~fg~ 466 (502)
T Consensus 274 ~~DllLL~hCLW~d~~s~~~-l~~~l~~~~~~~a~~Q~~~l~~-----~~~~~~~~~q~~q~~~~~~~~~~~~~~~mf~r 347 (498)
T PRK13531 274 PIDLILLKDCLWHDAQSLNL-LQQQLEVLMTGHAWQQQGMLTR-----LGAIVQRWLQLQQQQSDKTALTVIKQGGMFSR 347 (498)
T ss_pred HHHHHHHHCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHEEEECCCHHHCC
T ss_conf 98889986358798567899-9999999999988889999999-----99999999999999986654266301101046
Q ss_pred CCHHHH
Q ss_conf 843799
Q gi|254780627|r 467 RDHTTV 472 (502)
Q Consensus 467 rdHsTV 472 (502)
T Consensus 348 k~~y~l 353 (498)
T PRK13531 348 RPQYQL 353 (498)
T ss_pred CCCCCC
T ss_conf 642126