HHsearch alignment for GI: 254780627 and conserved domain: PRK13826
>PRK13826 Dtr system oriT relaxase; Provisional.
Probab=93.54 E-value=0.56 Score=26.99 Aligned_cols=102 Identities=17% Similarity=0.302 Sum_probs=63.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH-H--HHHHHCCCHHHHH-------HHHHHCCHHHHHHHH
Q ss_conf 98627888857999999999986306881686469888999-9--9998619889999-------997403102054444
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR-F--ASAIRDNCALNLK-------DSLRNIDLLLIDDMQ 269 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~-~--~~a~~~~~~~~fr-------~~~r~~DvLliDDiq 269 (502)
T Consensus 401 ~VvG~AGaGKStmL~aA-ReawEa~-GyrV~GaALsGkAAegLe~~sGI~SrTlAs~e~~w~~gr~~L~~~dVlVIDEAG 478 (1102)
T PRK13826 401 AVIGRAGAGKTTMMKAA-REAWEAA-GYRVVGGALAGKAAEGLEKEAGIASRTLSSWELRWNQGRDQLDNKTVFVLDEAG 478 (1102)
T ss_pred EEEECCCCCHHHHHHHH-HHHHHHC-CCEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCC
T ss_conf 99842888788999999-9999977-977980150078999775346953033899998743586556787389984555
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCC
Q ss_conf 5317506999999999988569879996487567613630
Q gi|254780627|r 270 FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 (502)
Q Consensus 270 fl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~ 309 (502)
T Consensus 479 MVg----srqmarvl~~ae~aGAKvVLVGD--~~QLQpIe 512 (1102)
T PRK13826 479 MVS----SRQMALFVEAVTRAGAKLVLVGD--PEQLQPIE 512 (1102)
T ss_pred CCC----HHHHHHHHHHHHHCCCEEEEECC--HHHHCCCC
T ss_conf 655----79999999999975998999688--78827610