HHsearch alignment for GI: 254780627 and conserved domain: PRK13898
>PRK13898 type IV secretion system ATPase VirB4; Provisional.
Probab=90.88 E-value=0.46 Score=27.60 Aligned_cols=80 Identities=19% Similarity=0.186 Sum_probs=47.2
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCE-------EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 7887632886147899999999824100136555554-------898627888857999999999986306881686469
Q gi|254780627|r 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP-------LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 (502)
Q Consensus 162 yTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NP-------Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~ 234 (502)
T Consensus 407 ~~lh~~~~G~~~~n~wg~av~~~~T~~g--tpy~fNfH~~d~GHtlI~G~TGsGKTtl~~fL~aq~~ky~--~~~f~fDk 482 (800)
T PRK13898 407 ASQHNYPLGKKFNNHWGEAVTVFDTTSG--TPFYFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFS--PRMFFFDK 482 (800)
T ss_pred HHHCCCCCCCCCCCCCCCCCEECCCCCC--CCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC--CEEEEEEC
T ss_conf 7761688897768888756650303899--8779867459877569989999989999999999987548--87999979
Q ss_pred HHHHHHHHHHH
Q ss_conf 88899999998
Q gi|254780627|r 235 EYFMWRFASAI 245 (502)
Q Consensus 235 e~F~~~~~~a~ 245 (502)
T Consensus 483 d~~~~i~~~a~ 493 (800)
T PRK13898 483 DRGAEIFIRAL 493 (800)
T ss_pred CCCHHHHHHHH
T ss_conf 99869999982