HHsearch alignment for GI: 254780627 and conserved domain: PRK13898

>PRK13898 type IV secretion system ATPase VirB4; Provisional.
Probab=90.88  E-value=0.46  Score=27.60  Aligned_cols=80  Identities=19%  Similarity=0.186  Sum_probs=47.2

Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCE-------EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf             7887632886147899999999824100136555554-------898627888857999999999986306881686469
Q gi|254780627|r  162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP-------LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA  234 (502)
Q Consensus       162 yTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NP-------Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~  234 (502)
T Consensus       407 ~~lh~~~~G~~~~n~wg~av~~~~T~~g--tpy~fNfH~~d~GHtlI~G~TGsGKTtl~~fL~aq~~ky~--~~~f~fDk  482 (800)
T PRK13898        407 ASQHNYPLGKKFNNHWGEAVTVFDTTSG--TPFYFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFS--PRMFFFDK  482 (800)
T ss_pred             HHHCCCCCCCCCCCCCCCCCEECCCCCC--CCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC--CEEEEEEC
T ss_conf             7761688897768888756650303899--8779867459877569989999989999999999987548--87999979


Q ss_pred             HHHHHHHHHHH
Q ss_conf             88899999998
Q gi|254780627|r  235 EYFMWRFASAI  245 (502)
Q Consensus       235 e~F~~~~~~a~  245 (502)
T Consensus       483 d~~~~i~~~a~  493 (800)
T PRK13898        483 DRGAEIFIRAL  493 (800)
T ss_pred             CCCHHHHHHHH
T ss_conf             99869999982