HHsearch alignment for GI: 254780627 and conserved domain: TIGR00416

>TIGR00416 sms DNA repair protein RadA; InterPro: IPR004504 RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=95.03  E-value=0.028  Score=36.27  Aligned_cols=48  Identities=27%  Similarity=0.436  Sum_probs=37.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH-HHHHHCC
Q ss_conf             8986278888579999999999863068816864698889999-9998619
Q gi|254780627|r  199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF-ASAIRDN  248 (502)
Q Consensus       199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~-~~a~~~~  248 (502)
T Consensus       106 iLiGG~PG~GKSTLLLqV~~~LA~~--~~~~LYVsGEES~~Q~klRA~RLG  154 (481)
T TIGR00416       106 ILIGGDPGIGKSTLLLQVACQLAKN--SMKVLYVSGEESLQQIKLRATRLG  154 (481)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHCC
T ss_conf             9846889963567899999998404--881689972301677888875455