HHsearch alignment for GI: 254780627 and conserved domain: TIGR00416
>TIGR00416 sms DNA repair protein RadA; InterPro: IPR004504 RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=95.03 E-value=0.028 Score=36.27 Aligned_cols=48 Identities=27% Similarity=0.436 Sum_probs=37.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH-HHHHHCC
Q ss_conf 8986278888579999999999863068816864698889999-9998619
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF-ASAIRDN 248 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~-~~a~~~~ 248 (502)
T Consensus 106 iLiGG~PG~GKSTLLLqV~~~LA~~--~~~~LYVsGEES~~Q~klRA~RLG 154 (481)
T TIGR00416 106 ILIGGDPGIGKSTLLLQVACQLAKN--SMKVLYVSGEESLQQIKLRATRLG 154 (481)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHCC
T ss_conf 9846889963567899999998404--881689972301677888875455