HHsearch alignment for GI: 254780627 and conserved domain: TIGR00618

>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=93.86  E-value=0.053  Score=34.24  Aligned_cols=30  Identities=40%  Similarity=0.483  Sum_probs=26.5

Q ss_pred             CEE-EEECCCCCCHHHHHHHHHHHHHHH-CCC
Q ss_conf             548-986278888579999999999863-068
Q gi|254780627|r  197 NPL-FIHASVGLGKTHLLQAIANASIKR-QPN  226 (502)
Q Consensus       197 NPL-fi~G~~GlGKTHLl~ai~~~~~~~-~~~  226 (502)
T Consensus        30 l~~f~i~G~tGAGKtsLldAI~yALYGkP~~~   61 (1063)
T TIGR00618        30 LKLFVICGKTGAGKTSLLDAITYALYGKPVPR   61 (1063)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             57367778899835459999999872888775