HHsearch alignment for GI: 254780627 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=98.62 E-value=2.9e-06 Score=64.56 Aligned_cols=271 Identities=17% Similarity=0.236 Sum_probs=166.3
Q ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC---CCCCC---EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 6447887632886147899999999824100136---55555---48986278888579999999999863068816864
Q gi|254780627|r 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT---TVRLN---PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 (502)
Q Consensus 159 NpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~---~~~~N---PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~ 232 (502)
T Consensus 200 ~P~vtyedi--G~l~e-~~~~~re~~elP~~hPe~f~~lGiePPkG~ll~GPPGtGktllaka~ane~~-----a~f~~i 271 (980)
T TIGR01243 200 VPEVTYEDI--GGLKE-AVKKIREMVELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG-----AYFIAI 271 (980)
T ss_pred CCCCCHHHC--CCHHH-HHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCC-----CEEEEE
T ss_conf 774203320--33589-9999999884357564789861889987358755898617899999875305-----517885
Q ss_pred EHHHHHHHHHHHHHCCCHHHHHHHHHH-CCHHHHHHHHHHCCCC---H-------HHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 698889999999861988999999740-3102054444531750---6-------9999999999885698799964875
Q gi|254780627|r 233 TAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLIDDMQFLQGKL---I-------QHEFCHLLNSLLDSAKQVVAAADRP 301 (502)
Q Consensus 233 ~~e~F~~~~~~a~~~~~~~~fr~~~r~-~DvLliDDiqfl~gk~---t-------qee~f~~~n~l~~~gkqiv~tsd~~ 301 (502)
T Consensus 272 nGPeimsky~Ge~e~~lr~if~eaeenaP~iifideidaiaPkr~e~~Geve~r~v~qlltlmdGlk~rG~v~viGatnr 351 (980)
T TIGR01243 272 NGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGKVIVIGATNR 351 (980)
T ss_pred CCCHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 06034433136307899999986530587078741211007641000016889999999999740024872899814688
Q ss_pred HHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH----HHHHHHCCCCHHHHHHHHHH
Q ss_conf 67613630345765302115775158889999999999988643116897898999----99985027888999999999
Q gi|254780627|r 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL----MHVARTVTTSGRELDGAFNQ 377 (502)
Q Consensus 302 P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~----~~la~~~~~~vR~Legal~~ 377 (502)
T Consensus 352 P~a~d-PalrrPGrfdr--ei~~~~Pd~~~r~eil~~-------htr~mP~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (980)
T TIGR01243 352 PDALD-PALRRPGRFDR--EIEIGVPDKEGRKEILQI-------HTRNMPLAEDVDKDAVIKVLKDLEKDERFEKEKIEK 421 (980)
T ss_pred CCCCC-HHHCCCCCCCC--EEEECCCCHHHHHHHHHH-------HHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 50026-22427886443--357418854567888876-------414787501100578999998766655667889999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHH-HCCCHHHHHCCCCCHHHCHHHHHHHHHHHHHCCC
Q ss_conf 99986302468778899999876303-788757989999999998-0999999408887740144579999999985156
Q gi|254780627|r 378 LVFRHSFAPILTAEIADELLSHLVNT-GETKKMRIEDIQRMVAKH-YNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 (502)
Q Consensus 378 l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~i~~~~I~~~V~~~-~~i~~~~l~s~~R~~~i~~~RqiamyL~r~~t~~ 455 (502)
T Consensus 422 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~thG~~Gadla--------al~~eaam~~lrr~~~e 491 (980)
T TIGR01243 422 IIEKV--SKANSEDEIKEILKEDGNVYVEVRNRLIDKLLDKLAEVTHGFVGADLA--------ALAKEAAMAALRRLIRE 491 (980)
T ss_pred HHHHH--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHHHHHHHHHHCC
T ss_conf 99988--631026789999750121246789999999999886542362035599--------99899999999987402
Q ss_pred CH
Q ss_conf 87
Q gi|254780627|r 456 SF 457 (502)
Q Consensus 456 s~ 457 (502)
T Consensus 492 g~ 493 (980)
T TIGR01243 492 GK 493 (980)
T ss_pred CC
T ss_conf 77