HHsearch alignment for GI: 254780627 and conserved domain: TIGR02237
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.42 E-value=0.0049 Score=41.58 Aligned_cols=136 Identities=21% Similarity=0.229 Sum_probs=76.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHH-HHHHHHHHHHCCC---HH------------HHHH--------
Q ss_conf 9862788885799999999998630688168646988-8999999986198---89------------9999--------
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY-FMWRFASAIRDNC---AL------------NLKD-------- 255 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~-F~~~~~~a~~~~~---~~------------~fr~-------- 255 (502)
T Consensus 16 QiYGp~G~GKTn~c--~~~a~~a~~~Gk~v~YiDTEGGLS~ER~~q~~~~~~~D~e~~~~~~iv~~~~~f~eQ~~ai~~~ 93 (223)
T TIGR02237 16 QIYGPPGSGKTNIC--LILAVNAARQGKKVVYIDTEGGLSPERFKQIAEDRALDPERVLSNVIVFEVFDFDEQEVAIQKT 93 (223)
T ss_pred EEECCCCCCHHHHH--HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHCCEEEECCCCHHHHHHHHHHH
T ss_conf 98758998678999--9999999861895899962898328999998630588988884153552353567899999999
Q ss_pred --HH----HHCCHHHHHHHHHH-----CCCC-----HHHHHH---HHHHHHHHC-CCEEEEE------CCCC-HHHHCCC
Q ss_conf --97----40310205444453-----1750-----699999---999998856-9879996------4875-6761363
Q gi|254780627|r 256 --SL----RNIDLLLIDDMQFL-----QGKL-----IQHEFC---HLLNSLLDS-AKQVVAA------ADRP-PSELESL 308 (502)
Q Consensus 256 --~~----r~~DvLliDDiqfl-----~gk~-----tqee~f---~~~n~l~~~-gkqiv~t------sd~~-P~~l~~l 308 (502)
T Consensus 94 ~~~~~~~G~~~~LvVvDs~t~~YRle~~~d~nk~~~~~~~l~~Ql~~Ll~lArk~~~AVviTNQvy~d~~~gG~~~~~P~ 173 (223)
T TIGR02237 94 SKLIDRDGDKADLVVVDSFTALYRLERSDDRNKQISLNRELARQLTLLLSLARKKDLAVVITNQVYTDVNNGGSETLRPL 173 (223)
T ss_pred HHHHHCCCCEEEEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCEEEEC
T ss_conf 99986068833148881533454202578602567999999999999999987649978997115886377973201003
Q ss_pred CHHHHHHHHCCEEEEECCC-CHHHHHHHHHH
Q ss_conf 0345765302115775158-88999999999
Q gi|254780627|r 309 DPRIRSRLQGGVSVPLGLH-DYEMRFSILKN 338 (502)
Q Consensus 309 ~~rL~SR~~~Gl~~~i~~P-d~e~r~~Il~~ 338 (502)
T Consensus 174 GG~~L-~h~~K~i~rLE~~~r~G~R~a~L~k 203 (223)
T TIGR02237 174 GGHLL-EHWSKVILRLEKLNRVGRRKATLEK 203 (223)
T ss_pred CCHHH-HHHHCEEEEEECCCCCCCEEEEEEE
T ss_conf 31134-3110213356447898742456654