HHsearch alignment for GI: 254780627 and conserved domain: TIGR02397

>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=98.00  E-value=3.6e-05  Score=56.78  Aligned_cols=210  Identities=21%  Similarity=0.223  Sum_probs=129.8

Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH--HHCCCCCEEEEEHHHHHHH
Q ss_conf             88763288614789999999982410013655555489862788885799999999998--6306881686469888999
Q gi|254780627|r  163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI--KRQPNLRVVYLTAEYFMWR  240 (502)
Q Consensus       163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~--~~~~~~~v~y~~~e~F~~~  240 (502)
T Consensus        12 ~F~d~~-GQ~~iv-~tL~NAi~--~~ri~H--A---YLF~GpRGtGKTS~ARIfAKaLNC~~~~~~PCn~C~~C~~i~~g   82 (363)
T TIGR02397        12 TFEDVI-GQEHIV-KTLKNAIK--NGRIAH--A---YLFSGPRGTGKTSIARIFAKALNCQGPDGEPCNECESCKEINSG   82 (363)
T ss_pred             CCCCCC-CCHHHH-HHHHHHHH--HCCCCC--E---EEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCC
T ss_conf             611023-517999-99999997--189662--3---45028599763558999999865887877877775022776528


Q ss_pred             H------HHHHHCCCHHHHHHH-----HH----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEE---EECCCCH
Q ss_conf             9------999861988999999-----74----0310205444453175069999999999885698799---9648756
Q gi|254780627|r  241 F------ASAIRDNCALNLKDS-----LR----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVV---AAADRPP  302 (502)
Q Consensus       241 ~------~~a~~~~~~~~fr~~-----~r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv---~tsd~~P  302 (502)
T Consensus        83 ~~~DviEiDAASN~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~----~AFNALLKTLEEPP~hV~FIlATTE--~  156 (363)
T TIGR02397        83 SSLDVIEIDAASNNGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSK----SAFNALLKTLEEPPEHVVFILATTE--P  156 (363)
T ss_pred             CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCH----HHHHHHHHHHCCCCCCEEEEEECCC--H
T ss_conf             986668864865687889999987303687554433588732302865----6899987652279876288873487--1


Q ss_pred             HHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             76136303457653021157751588899999999999886431168978989999998502788899999999999986
Q gi|254780627|r  303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH  382 (502)
Q Consensus       303 ~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~  382 (502)
T Consensus       157 ---~KiP~TIlSRCQr---F~Fk~i~~~~i~~~L~~-----I~~~E~I~~e~~AL~~IA~~a~GS~RDAlsllDQ~~~~~  225 (363)
T TIGR02397       157 ---HKIPATILSRCQR---FDFKRIPLEDIVERLKK-----ILDKEGIKIEDEALELIARAADGSMRDALSLLDQAISFG  225 (363)
T ss_pred             ---HHCCCCCEEECEE---ECCCCCCHHHHHHHHHH-----HHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf             ---1205540210003---12678998999999999-----998708831778999999962896106889999999826


Q ss_pred             HH-CCCCCHHHHHHHHH
Q ss_conf             30-24687788999998
Q gi|254780627|r  383 SF-APILTAEIADELLS  398 (502)
Q Consensus       383 ~~-~~~~~~~~~~~~l~  398 (502)
T Consensus       226 ~~~DG~i~~~~v~~~lG  242 (363)
T TIGR02397       226 NGSDGKITYEDVNEMLG  242 (363)
T ss_pred             CCCCCCCCHHHHHHHHC
T ss_conf             88788657899999835