HHsearch alignment for GI: 254780627 and conserved domain: TIGR02397
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=98.00 E-value=3.6e-05 Score=56.78 Aligned_cols=210 Identities=21% Similarity=0.223 Sum_probs=129.8
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH--HHCCCCCEEEEEHHHHHHH
Q ss_conf 88763288614789999999982410013655555489862788885799999999998--6306881686469888999
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI--KRQPNLRVVYLTAEYFMWR 240 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~--~~~~~~~v~y~~~e~F~~~ 240 (502)
T Consensus 12 ~F~d~~-GQ~~iv-~tL~NAi~--~~ri~H--A---YLF~GpRGtGKTS~ARIfAKaLNC~~~~~~PCn~C~~C~~i~~g 82 (363)
T TIGR02397 12 TFEDVI-GQEHIV-KTLKNAIK--NGRIAH--A---YLFSGPRGTGKTSIARIFAKALNCQGPDGEPCNECESCKEINSG 82 (363)
T ss_pred CCCCCC-CCHHHH-HHHHHHHH--HCCCCC--E---EEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCC
T ss_conf 611023-517999-99999997--189662--3---45028599763558999999865887877877775022776528
Q ss_pred H------HHHHHCCCHHHHHHH-----HH----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEE---EECCCCH
Q ss_conf 9------999861988999999-----74----0310205444453175069999999999885698799---9648756
Q gi|254780627|r 241 F------ASAIRDNCALNLKDS-----LR----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVV---AAADRPP 302 (502)
Q Consensus 241 ~------~~a~~~~~~~~fr~~-----~r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv---~tsd~~P 302 (502)
T Consensus 83 ~~~DviEiDAASN~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~----~AFNALLKTLEEPP~hV~FIlATTE--~ 156 (363)
T TIGR02397 83 SSLDVIEIDAASNNGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSK----SAFNALLKTLEEPPEHVVFILATTE--P 156 (363)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCH----HHHHHHHHHHCCCCCCEEEEEECCC--H
T ss_conf 986668864865687889999987303687554433588732302865----6899987652279876288873487--1
Q ss_pred HHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 76136303457653021157751588899999999999886431168978989999998502788899999999999986
Q gi|254780627|r 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 (502)
Q Consensus 303 ~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~ 382 (502)
T Consensus 157 ---~KiP~TIlSRCQr---F~Fk~i~~~~i~~~L~~-----I~~~E~I~~e~~AL~~IA~~a~GS~RDAlsllDQ~~~~~ 225 (363)
T TIGR02397 157 ---HKIPATILSRCQR---FDFKRIPLEDIVERLKK-----ILDKEGIKIEDEALELIARAADGSMRDALSLLDQAISFG 225 (363)
T ss_pred ---HHCCCCCEEECEE---ECCCCCCHHHHHHHHHH-----HHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf ---1205540210003---12678998999999999-----998708831778999999962896106889999999826
Q ss_pred HH-CCCCCHHHHHHHHH
Q ss_conf 30-24687788999998
Q gi|254780627|r 383 SF-APILTAEIADELLS 398 (502)
Q Consensus 383 ~~-~~~~~~~~~~~~l~ 398 (502)
T Consensus 226 ~~~DG~i~~~~v~~~lG 242 (363)
T TIGR02397 226 NGSDGKITYEDVNEMLG 242 (363)
T ss_pred CCCCCCCCHHHHHHHHC
T ss_conf 88788657899999835