HHsearch alignment for GI: 254780627 and conserved domain: TIGR02525
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ; InterPro: IPR013364 Proteins in this entry are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase (IPR013363 from INTERPRO) of a type-IV secretion-like system of the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii..
Probab=96.80 E-value=0.00082 Score=47.10 Aligned_cols=71 Identities=21% Similarity=0.293 Sum_probs=46.5
Q ss_pred HHHCCCCCHHHHHHHH--HHHHHCCCCCCC-----------CCCCCEE-EEECCCCCCHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 7632886147899999--999824100136-----------5555548-9862788885799999999998630688168
Q gi|254780627|r 165 STFIEGSSNRVALTAA--QSIAEVDSHGYT-----------TVRLNPL-FIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 (502)
Q Consensus 165 DnFVVG~sN~lA~aAA--kaVAe~pg~~~~-----------~~~~NPL-fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~ 230 (502)
T Consensus 104 ~nf~QAt~~~~~~AislTlRvips~IP~L~~MgiE~DLf~alLP~~GLGLiCG~TGSGKSTl~AaiY~~~l~t~pdRKiv 183 (374)
T TIGR02525 104 CNFIQATIGKLETAISLTLRVIPSDIPDLKKMGIEPDLFEALLPKAGLGLICGETGSGKSTLAAAIYRHCLETYPDRKIV 183 (374)
T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 10004415554444434420055666513234787689987050037802217789728999999999850748897079
Q ss_pred EEEHHHH
Q ss_conf 6469888
Q gi|254780627|r 231 YLTAEYF 237 (502)
Q Consensus 231 y~~~e~F 237 (502)
T Consensus 184 --T~EDP 188 (374)
T TIGR02525 184 --TYEDP 188 (374)
T ss_pred --EEECC
T ss_conf --86577