HHsearch alignment for GI: 254780627 and conserved domain: TIGR02639

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=97.90  E-value=0.001  Score=46.38  Aligned_cols=237  Identities=20%  Similarity=0.276  Sum_probs=153.5

Q ss_pred             CCCCCHHHHHHHHHHH-HHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH--CCC----CCEEEEEHHHHHHH
Q ss_conf             2886147899999999-8241001365555548986278888579999999999863--068----81686469888999
Q gi|254780627|r  168 IEGSSNRVALTAAQSI-AEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR--QPN----LRVVYLTAEYFMWR  240 (502)
Q Consensus       168 VVG~sN~lA~aAAkaV-Ae~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~--~~~----~~v~y~~~e~F~~~  240 (502)
T Consensus       210 LIGRE~EleRt--iQvLCRR-------~KNNPl~V-GEPGVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDm----G~  275 (774)
T TIGR02639       210 LIGREDELERT--IQVLCRR-------KKNNPLLV-GEPGVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDM----GT  275 (774)
T ss_pred             CCCCHHHHHHH--HHHHCCC-------CCCCCCEE-CCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECH----HH
T ss_conf             34566887423--3320345-------67887204-48886448999999998641564670024783454043----45


Q ss_pred             HHHHHHC-CCHHH-HH------HHHHHCCHHHHHHHHHHCCC-CH---HHHHHHHHHHHHHCCCEEEEECCCCHHHHCCC
Q ss_conf             9999861-98899-99------99740310205444453175-06---99999999998856987999648756761363
Q gi|254780627|r  241 FASAIRD-NCALN-LK------DSLRNIDLLLIDDMQFLQGK-LI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESL  308 (502)
Q Consensus       241 ~~~a~~~-~~~~~-fr------~~~r~~DvLliDDiqfl~gk-~t---qee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l  308 (502)
T Consensus       276 LLAGTKYRGDFE~RLK~V~~Ei~~~~~anILFIDEIHTIVGAGATSGGsmDASNLLKPaL~~G~iRCIGsTTy~EY~~~F  355 (774)
T TIGR02639       276 LLAGTKYRGDFEERLKAVVSEIEKEPNANILFIDEIHTIVGAGATSGGSMDASNLLKPALASGKIRCIGSTTYEEYKNHF  355 (774)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCHHHHHCHH
T ss_conf             64102454247899999999985289995466411010331787875155244321125307877862265248641110


Q ss_pred             --CHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             --034576530211577515888999999999998864311689789899999985027888999999999999863024
Q gi|254780627|r  309 --DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP  386 (502)
Q Consensus       309 --~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~  386 (502)
T Consensus       356 eKDrALsRRFQK---IDv~EPs~eet~~ILkG-Lk~~YE~fH~V~Y~~eal~~Av~LS~ryI~------------DRfL-  418 (774)
T TIGR02639       356 EKDRALSRRFQK---IDVGEPSIEETVKILKG-LKEQYEEFHHVKYSDEALEAAVELSARYIN------------DRFL-  418 (774)
T ss_pred             HCCCCCCCCCCE---ECCCCCCHHHHHHHHHH-HHHHHHCCCCEECCHHHHHHHHHHHHHHCC------------CCCC-
T ss_conf             102021654233---11795788899999986-554201325011386999999999888602------------5789-


Q ss_pred             CCC--HHHHHHHHHH-HHCCC--CCCC--------------CCHHHHHHHHHHHHCCCHHHHHCCC-CCH
Q ss_conf             687--7889999987-63037--8875--------------7989999999998099999940888-774
Q gi|254780627|r  387 ILT--AEIADELLSH-LVNTG--ETKK--------------MRIEDIQRMVAKHYNISRNDLLSNR-RVR  436 (502)
Q Consensus       387 ~~~--~~~~~~~l~~-~~~~~--~~~~--------------i~~~~I~~~V~~~~~i~~~~l~s~~-R~~  436 (502)
T Consensus       419 -PDKAIDviDEaGA~~~l~~~~~~~~~eadekGleetalPev~~~diE~vvak~a~iP~~~~s~ddD~~~  487 (774)
T TIGR02639       419 -PDKAIDVIDEAGAAFRLRAKAKKKANEADEKGLEETALPEVNVKDIEEVVAKMAKIPVKTVSSDDDREK  487 (774)
T ss_pred             -CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHH
T ss_conf             -854322889999999971202776432011253000478785444999998871899415426447988