HHsearch alignment for GI: 254780627 and conserved domain: TIGR02639
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=97.90 E-value=0.001 Score=46.38 Aligned_cols=237 Identities=20% Similarity=0.276 Sum_probs=153.5
Q ss_pred CCCCCHHHHHHHHHHH-HHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH--CCC----CCEEEEEHHHHHHH
Q ss_conf 2886147899999999-8241001365555548986278888579999999999863--068----81686469888999
Q gi|254780627|r 168 IEGSSNRVALTAAQSI-AEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR--QPN----LRVVYLTAEYFMWR 240 (502)
Q Consensus 168 VVG~sN~lA~aAAkaV-Ae~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~--~~~----~~v~y~~~e~F~~~ 240 (502)
T Consensus 210 LIGRE~EleRt--iQvLCRR-------~KNNPl~V-GEPGVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDm----G~ 275 (774)
T TIGR02639 210 LIGREDELERT--IQVLCRR-------KKNNPLLV-GEPGVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDM----GT 275 (774)
T ss_pred CCCCHHHHHHH--HHHHCCC-------CCCCCCEE-CCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECH----HH
T ss_conf 34566887423--3320345-------67887204-48886448999999998641564670024783454043----45
Q ss_pred HHHHHHC-CCHHH-HH------HHHHHCCHHHHHHHHHHCCC-CH---HHHHHHHHHHHHHCCCEEEEECCCCHHHHCCC
Q ss_conf 9999861-98899-99------99740310205444453175-06---99999999998856987999648756761363
Q gi|254780627|r 241 FASAIRD-NCALN-LK------DSLRNIDLLLIDDMQFLQGK-LI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 (502)
Q Consensus 241 ~~~a~~~-~~~~~-fr------~~~r~~DvLliDDiqfl~gk-~t---qee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l 308 (502)
T Consensus 276 LLAGTKYRGDFE~RLK~V~~Ei~~~~~anILFIDEIHTIVGAGATSGGsmDASNLLKPaL~~G~iRCIGsTTy~EY~~~F 355 (774)
T TIGR02639 276 LLAGTKYRGDFEERLKAVVSEIEKEPNANILFIDEIHTIVGAGATSGGSMDASNLLKPALASGKIRCIGSTTYEEYKNHF 355 (774)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCHHHHHCHH
T ss_conf 64102454247899999999985289995466411010331787875155244321125307877862265248641110
Q ss_pred --CHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf --034576530211577515888999999999998864311689789899999985027888999999999999863024
Q gi|254780627|r 309 --DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 (502)
Q Consensus 309 --~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~ 386 (502)
T Consensus 356 eKDrALsRRFQK---IDv~EPs~eet~~ILkG-Lk~~YE~fH~V~Y~~eal~~Av~LS~ryI~------------DRfL- 418 (774)
T TIGR02639 356 EKDRALSRRFQK---IDVGEPSIEETVKILKG-LKEQYEEFHHVKYSDEALEAAVELSARYIN------------DRFL- 418 (774)
T ss_pred HCCCCCCCCCCE---ECCCCCCHHHHHHHHHH-HHHHHHCCCCEECCHHHHHHHHHHHHHHCC------------CCCC-
T ss_conf 102021654233---11795788899999986-554201325011386999999999888602------------5789-
Q ss_pred CCC--HHHHHHHHHH-HHCCC--CCCC--------------CCHHHHHHHHHHHHCCCHHHHHCCC-CCH
Q ss_conf 687--7889999987-63037--8875--------------7989999999998099999940888-774
Q gi|254780627|r 387 ILT--AEIADELLSH-LVNTG--ETKK--------------MRIEDIQRMVAKHYNISRNDLLSNR-RVR 436 (502)
Q Consensus 387 ~~~--~~~~~~~l~~-~~~~~--~~~~--------------i~~~~I~~~V~~~~~i~~~~l~s~~-R~~ 436 (502)
T Consensus 419 -PDKAIDviDEaGA~~~l~~~~~~~~~eadekGleetalPev~~~diE~vvak~a~iP~~~~s~ddD~~~ 487 (774)
T TIGR02639 419 -PDKAIDVIDEAGAAFRLRAKAKKKANEADEKGLEETALPEVNVKDIEEVVAKMAKIPVKTVSSDDDREK 487 (774)
T ss_pred -CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHH
T ss_conf -854322889999999971202776432011253000478785444999998871899415426447988