HHsearch alignment for GI: 254780627 and conserved domain: TIGR02639
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=97.32 E-value=0.0024 Score=43.78 Aligned_cols=204 Identities=17% Similarity=0.261 Sum_probs=120.6
Q ss_pred HHHCCCCCHHHH-HHHHHHHH----HCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH-H
Q ss_conf 763288614789-99999998----24100136555554898627888857999999999986306881686469888-9
Q gi|254780627|r 165 STFIEGSSNRVA-LTAAQSIA----EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF-M 238 (502)
Q Consensus 165 DnFVVG~sN~lA-~aAAkaVA----e~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F-~ 238 (502)
T Consensus 496 ~~kIfGQD~AI~~lv~aiK~SrAGl~~~nkP~G-----SFLF~GPTGVGKTElak~LA~~L----------Gv~l~RFDM 560 (774)
T TIGR02639 496 KAKIFGQDEAIEQLVSAIKRSRAGLGEPNKPVG-----SFLFVGPTGVGKTELAKQLAEEL----------GVHLLRFDM 560 (774)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEE-----EEEEECCCCCCHHHHHHHHHHHH----------CCHHCCCCC
T ss_conf 013151589999999999998742477888168-----88864798962578899999970----------820010465
Q ss_pred HHHHHHH------H---------CC-CHHHHHHHHHH-CCHHHHHHHHHHCCCCHHHHHHHHHHH--HHHCCCE------
Q ss_conf 9999998------6---------19-88999999740-310205444453175069999999999--8856987------
Q gi|254780627|r 239 WRFASAI------R---------DN-CALNLKDSLRN-IDLLLIDDMQFLQGKLIQHEFCHLLNS--LLDSAKQ------ 293 (502)
Q Consensus 239 ~~~~~a~------~---------~~-~~~~fr~~~r~-~DvLliDDiqfl~gk~tqee~f~~~n~--l~~~gkq------ 293 (502)
T Consensus 561 SEYmEKHTVsRLIGsPPGYVGfEqGGLLT~Av--rK~P~cVLLLDEIEK-AHpDI~NILLQVMD~AtLTDN~GrKaDFRN 637 (774)
T TIGR02639 561 SEYMEKHTVSRLIGSPPGYVGFEQGGLLTDAV--RKHPHCVLLLDEIEK-AHPDIYNILLQVMDYATLTDNNGRKADFRN 637 (774)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH--CCCCCEEEHHHHHHH-HHHHHHHHHHHHHCCCEEECCCCCEEEECC
T ss_conf 04468999987416888851316777212233--128853542346666-313366678766335434058885763113
Q ss_pred --EEEECCCCHHHHCC---------------------CCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHH----H
Q ss_conf --99964875676136---------------------30345765302115775158889999999999988643----1
Q gi|254780627|r 294 --VVAAADRPPSELES---------------------LDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK----E 346 (502)
Q Consensus 294 --iv~tsd~~P~~l~~---------------------l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~----~ 346 (502)
T Consensus 638 VILIMTSNaGa~E~~~~~iGF~~~~~~~~~~~Aikk~F~PEFRNRLDa--ii~F~~L~~~~~~~i~~K~l~el~~~L~eK 715 (774)
T TIGR02639 638 VILIMTSNAGAREMSKNPIGFGGERVEDKSEKAIKKLFSPEFRNRLDA--IIAFNDLSEEVAEKIVKKFLDELQKQLNEK 715 (774)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC--EEECCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 688840370010236776442555412334888973158742013346--441699889999999999999999755306
Q ss_pred CCCCCCCHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 168978989999998502788---899999999999986302468778899999
Q gi|254780627|r 347 DPKLNINEEVLMHVARTVTTS---GRELDGAFNQLVFRHSFAPILTAEIADELL 397 (502)
Q Consensus 347 ~~~~~l~~~v~~~la~~~~~~---vR~Legal~~l~~~~~~~~~~~~~~~~~~l 397 (502)
T Consensus 716 ~v~l~l~~~a~~~LA~KGY~~efGARp----l~R~I-----~~~i~~~L~dEIL 760 (774)
T TIGR02639 716 NVELELTDDAIKYLAEKGYDEEFGARP----LARVI-----QEEIKKPLSDEIL 760 (774)
T ss_pred CEEEEECHHHHHHHHHHCCCCCCCCCH----HHHHH-----HHHHHHHHHHHHC
T ss_conf 537876478999998636781105544----89998-----8741257654420