HHsearch alignment for GI: 254780627 and conserved domain: TIGR02773
>TIGR02773 addB_Gpos ATP-dependent nuclease subunit B; InterPro: IPR014140 DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in others. AddA is conserved between the firmicutes and the alphaproteobacteria, while its partner protein (RexB) is not. This entry describes the ATP-dependent nuclease subunit B (AddB/RexB) protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous and functionally equivalent, merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function..
Probab=95.71 E-value=0.0097 Score=39.49 Aligned_cols=252 Identities=17% Similarity=0.268 Sum_probs=133.2
Q ss_pred EEECCCCCCHHHH-HHHHHHHHHHHCC-CCCEEEEEHHHHHHHH----HHHHHCCC-----HHHHHH-------------
Q ss_conf 9862788885799-9999999986306-8816864698889999----99986198-----899999-------------
Q gi|254780627|r 200 FIHASVGLGKTHL-LQAIANASIKRQP-NLRVVYLTAEYFMWRF----ASAIRDNC-----ALNLKD------------- 255 (502)
Q Consensus 200 fi~G~~GlGKTHL-l~ai~~~~~~~~~-~~~v~y~~~e~F~~~~----~~a~~~~~-----~~~fr~------------- 255 (502)
T Consensus 5 ~i~GRaGtGKs~~~i~~Ik~ki-~~~p~g~~iillVPdQ~TFq~E~~l~~~~e~~g~lraqvlSF~RLA~rVlqE~GG~t 83 (1192)
T TIGR02773 5 FIYGRAGTGKSTFIIDEIKQKI-KENPLGKPIILLVPDQMTFQMEKALLNDIELNGSLRAQVLSFSRLAWRVLQETGGLT 83 (1192)
T ss_pred EEEECCCCCHHHHHHHHHHHHH-HCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCH
T ss_conf 9983268754578889999997-107898953787688524899999816777687444113204476556876337602
Q ss_pred --HH--HHCCHHHHHHHHHHCCC------C-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHH---HHHCCEE
Q ss_conf --97--40310205444453175------0-699999999998856987999648756761363034576---5302115
Q gi|254780627|r 256 --SL--RNIDLLLIDDMQFLQGK------L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS---RLQGGVS 321 (502)
Q Consensus 256 --~~--r~~DvLliDDiqfl~gk------~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~S---R~~~Gl~ 321 (502)
T Consensus 84 r~~l~~~G~~M~i~K~~ee~k~~lkvy~~A~~~~GF~~~l~~~itEfKry~----v~pe~L~~~~~~~~~~~~~~~~~l~ 159 (1192)
T TIGR02773 84 RQFLTQAGIEMLIRKVIEEHKDELKVYQKASRKKGFLAKLSEMITEFKRYE----VTPEDLRKAAEELEDSERRSERVLK 159 (1192)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 677988758999999998601112478886232534899999988762206----8988999998610132024416677
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHH-----------------HHHHHHHHHH-
Q ss_conf 7751588899999999999886431168978989999998502788899999-----------------9999999863-
Q gi|254780627|r 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG-----------------AFNQLVFRHS- 383 (502)
Q Consensus 322 ~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Leg-----------------al~~l~~~~~- 383 (502)
T Consensus 160 ~KL~--Dl----~~iY~~fe~~--L~~~y~~~ED~L~LL~~~l~~s~-~~~~AeiyIDGF~~Ftp~e~~Vi~~L~k~a~~ 230 (1192)
T TIGR02773 160 EKLE--DL----SLIYQEFEER--LADEYIDSEDQLNLLAEKLEQSE-LLKGAEIYIDGFTSFTPQEYSVIEKLMKKAKK 230 (1192)
T ss_pred HHHH--HH----HHHHHHHHHH--HCCCCCCCHHHHHHHHHHHHHHH-HHCCCEEEEECCCCCCHHHHHHHHHHHHHCCE
T ss_conf 6689--99----9999999998--70775773344889998721425-43585179835657677999999998531252
Q ss_pred HCCCCCHHHH--HHHHH--HHHCCCCCCCCCHHHHHHHHHHHHCCCHHH--HHCCCCCHHHCHHHHHHHHHHHHHCCCCH
Q ss_conf 0246877889--99998--763037887579899999999980999999--40888774014457999999998515687
Q gi|254780627|r 384 FAPILTAEIA--DELLS--HLVNTGETKKMRIEDIQRMVAKHYNISRND--LLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 (502)
Q Consensus 384 ~~~~~~~~~~--~~~l~--~~~~~~~~~~i~~~~I~~~V~~~~~i~~~~--l~s~~R~~~i~~~RqiamyL~r~~t~~s~ 457 (502)
T Consensus 231 vtv~Lt~D~~~~~~~~de~~LF~~----t~~t~~~L~~la~~~gi~v~~~~~~~~~~~~RF~~~~~L-A~LE~~f~a~p~ 305 (1192)
T TIGR02773 231 VTVSLTLDEPEYKEEEDELDLFRA----TSETYYRLKELAKELGIEVEEPIFLNEERPNRFKKNKEL-AHLEKQFDARPF 305 (1192)
T ss_pred EEEEEECCCCCCCCCCCCHHHCCC----CHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHH-HHHHHHHHCCCC
T ss_conf 479985486110157885322258----678999999999874985010344213323311468548-999988401676
Q ss_pred HHHHHHHCCCCHHHHHH
Q ss_conf 89998847984379999
Q gi|254780627|r 458 PEIGRRFGDRDHTTVLH 474 (502)
Q Consensus 458 ~~IG~~fg~rdHsTV~~ 474 (502)
T Consensus 306 ~----~y~~~~~~l~i~ 318 (1192)
T TIGR02773 306 K----AYKEKEKSLSIF 318 (1192)
T ss_pred C----CCCCCCCCCEEE
T ss_conf 6----766776562211