HHsearch alignment for GI: 254780627 and conserved domain: TIGR02881
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=94.79 E-value=0.39 Score=28.07 Aligned_cols=154 Identities=18% Similarity=0.294 Sum_probs=106.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH--HHHHHHHHHHHCCCHHHHHHHHHH--CCHHHHHHHHHHC--C
Q ss_conf 986278888579999999999863068816864698--889999999861988999999740--3102054444531--7
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE--YFMWRFASAIRDNCALNLKDSLRN--IDLLLIDDMQFLQ--G 273 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e--~F~~~~~~a~~~~~~~~fr~~~r~--~DvLliDDiqfl~--g 273 (502)
T Consensus 46 iFKGNPGTGKTTVAR~~gklf~emnvL~KGH~iE~ERADLVGEYI----GHTAqkTRe~~kkA~GGvLFiDEAYSLaRGG 121 (261)
T TIGR02881 46 IFKGNPGTGKTTVARLLGKLFKEMNVLSKGHLIEVERADLVGEYI----GHTAQKTREVIKKALGGVLFIDEAYSLARGG 121 (261)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC----CCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf 742786684389999999998533756788678876222122320----3004899999998638800557777761488
Q ss_pred -CC-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHC---CCCHHHHHHHHCCEEEEECCCCHHH--HHHHHHHHHHHHHHH
Q ss_conf -50-6999999999988569879996487567613---6303457653021157751588899--999999999886431
Q gi|254780627|r 274 -KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELE---SLDPRIRSRLQGGVSVPLGLHDYEM--RFSILKNRLAISQKE 346 (502)
Q Consensus 274 -k~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~---~l~~rL~SR~~~Gl~~~i~~Pd~e~--r~~Il~~k~~~~~~~ 346 (502)
T Consensus 122 EKDFGKEAIDtLVK~mEd~~~~lvlILAGY~~EM~yFL~~NPGL~SRFP----i~i~FPdY~~eeL~~Ia~~m-----~~ 192 (261)
T TIGR02881 122 EKDFGKEAIDTLVKAMEDQRNELVLILAGYSDEMDYFLSLNPGLRSRFP----ISIDFPDYTVEELMEIAERM-----VK 192 (261)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCC----CEEECCCCCHHHHHHHHHHH-----HH
T ss_conf 8876620888999987615698689970876899998620779777665----05418899888999999999-----86
Q ss_pred CCCCCCCHHHHHHHHHHCCC
Q ss_conf 16897898999999850278
Q gi|254780627|r 347 DPKLNINEEVLMHVARTVTT 366 (502)
Q Consensus 347 ~~~~~l~~~v~~~la~~~~~ 366 (502)
T Consensus 193 ~ReY~Lt~~A~~~lr~~l~~ 212 (261)
T TIGR02881 193 EREYKLTEEAKWKLREHLAK 212 (261)
T ss_pred HHHHCCCHHHHHHHHHHHHH
T ss_conf 46422578899999999741