HHsearch alignment for GI: 254780627 and conserved domain: TIGR02902

>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=95.48  E-value=0.033  Score=35.74  Aligned_cols=191  Identities=25%  Similarity=0.353  Sum_probs=105.9

Q ss_pred             HHHHHCCCCCH-HHHHHHHHHHHHCCCCCCCCCCCCE--EEEECCCCCCHHHHHHHHHHHHHHHC-----CCCCEEEEEH
Q ss_conf             88763288614-7899999999824100136555554--89862788885799999999998630-----6881686469
Q gi|254780627|r  163 VFSTFIEGSSN-RVALTAAQSIAEVDSHGYTTVRLNP--LFIHASVGLGKTHLLQAIANASIKRQ-----PNLRVVYLTA  234 (502)
Q Consensus       163 TFDnFVVG~sN-~lA~aAAkaVAe~pg~~~~~~~~NP--Lfi~G~~GlGKTHLl~ai~~~~~~~~-----~~~~v~y~~~  234 (502)
T Consensus        63 SF~EI-iGQe~GI~ALKAAL--C---GP-------NPQHVIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~FVEiDA  129 (532)
T TIGR02902        63 SFDEI-IGQEEGIKALKAAL--C---GP-------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAFVEIDA  129 (532)
T ss_pred             CCCCC-CCCHHHHHHHHHHC--C---CC-------CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEC
T ss_conf             63325-67355689999860--6---86-------896389878869617899999999865087537898866898505


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHH--------------HHHC---------------------CHHHHHHHHHHC----CC-
Q ss_conf             8889999999861988999999--------------7403---------------------102054444531----75-
Q gi|254780627|r  235 EYFMWRFASAIRDNCALNLKDS--------------LRNI---------------------DLLLIDDMQFLQ----GK-  274 (502)
Q Consensus       235 e~F~~~~~~a~~~~~~~~fr~~--------------~r~~---------------------DvLliDDiqfl~----gk-  274 (502)
T Consensus       130 --------------TT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AHGGvLFIDEIGELHP~~MNKL  195 (532)
T TIGR02902       130 --------------TTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAHGGVLFIDEIGELHPVQMNKL  195 (532)
T ss_pred             --------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf             --------------103602146666567761585333765457885575877763202586551212466582435314


Q ss_pred             -CHHHH---HH-------------HHHHHHHHCC----CEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEE--CCCCHHH
Q ss_conf             -06999---99-------------9999988569----879996487567613630345765302115775--1588899
Q gi|254780627|r  275 -LIQHE---FC-------------HLLNSLLDSA----KQVVAAADRPPSELESLDPRIRSRLQGGVSVPL--GLHDYEM  331 (502)
Q Consensus       275 -~tqee---~f-------------~~~n~l~~~g----kqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i--~~Pd~e~  331 (502)
T Consensus       196 LKVLEDRKVFLdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIp---PAlRSR-----C~EIFFR~L~~EE  267 (532)
T TIGR02902       196 LKVLEDRKVFLDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIP---PALRSR-----CVEIFFRPLLKEE  267 (532)
T ss_pred             HHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCC---HHHHCC-----CEEEEECCCCHHH
T ss_conf             11330222000012358777865427899720678734012133369877678---346505-----2267716888789


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHHHHHC--C-CCCHHHHHHHH
Q ss_conf             99999999988643116897898999999850278889999999999--9986302--4-68778899999
Q gi|254780627|r  332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL--VFRHSFA--P-ILTAEIADELL  397 (502)
Q Consensus       332 r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l--~~~~~~~--~-~~~~~~~~~~l  397 (502)
T Consensus       268 i~~iAk~-----AaeKIg~~l~~~Al~~I~~-Ya~nGRE---AvN~~QLAaG~a~~E~Rk~I~~~DieWV~  329 (532)
T TIGR02902       268 IKEIAKN-----AAEKIGLNLEKEALDLIAK-YASNGRE---AVNLVQLAAGIALGENRKRILAEDIEWVI  329 (532)
T ss_pred             HHHHHHH-----HHHHCCCCCCHHHHHHHHH-HHCCCCH---HHHHHHHHHHHEECCCCCEECHHHHHHHH
T ss_conf             9999876-----5653046547547999998-7405406---77899997314012887612054644555