HHsearch alignment for GI: 254780627 and conserved domain: TIGR02902
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=95.48 E-value=0.033 Score=35.74 Aligned_cols=191 Identities=25% Similarity=0.353 Sum_probs=105.9
Q ss_pred HHHHHCCCCCH-HHHHHHHHHHHHCCCCCCCCCCCCE--EEEECCCCCCHHHHHHHHHHHHHHHC-----CCCCEEEEEH
Q ss_conf 88763288614-7899999999824100136555554--89862788885799999999998630-----6881686469
Q gi|254780627|r 163 VFSTFIEGSSN-RVALTAAQSIAEVDSHGYTTVRLNP--LFIHASVGLGKTHLLQAIANASIKRQ-----PNLRVVYLTA 234 (502)
Q Consensus 163 TFDnFVVG~sN-~lA~aAAkaVAe~pg~~~~~~~~NP--Lfi~G~~GlGKTHLl~ai~~~~~~~~-----~~~~v~y~~~ 234 (502)
T Consensus 63 SF~EI-iGQe~GI~ALKAAL--C---GP-------NPQHVIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~FVEiDA 129 (532)
T TIGR02902 63 SFDEI-IGQEEGIKALKAAL--C---GP-------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAFVEIDA 129 (532)
T ss_pred CCCCC-CCCHHHHHHHHHHC--C---CC-------CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEC
T ss_conf 63325-67355689999860--6---86-------896389878869617899999999865087537898866898505
Q ss_pred HHHHHHHHHHHHCCCHHHHHHH--------------HHHC---------------------CHHHHHHHHHHC----CC-
Q ss_conf 8889999999861988999999--------------7403---------------------102054444531----75-
Q gi|254780627|r 235 EYFMWRFASAIRDNCALNLKDS--------------LRNI---------------------DLLLIDDMQFLQ----GK- 274 (502)
Q Consensus 235 e~F~~~~~~a~~~~~~~~fr~~--------------~r~~---------------------DvLliDDiqfl~----gk- 274 (502)
T Consensus 130 --------------TT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AHGGvLFIDEIGELHP~~MNKL 195 (532)
T TIGR02902 130 --------------TTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAHGGVLFIDEIGELHPVQMNKL 195 (532)
T ss_pred --------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf --------------103602146666567761585333765457885575877763202586551212466582435314
Q ss_pred -CHHHH---HH-------------HHHHHHHHCC----CEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEE--CCCCHHH
Q ss_conf -06999---99-------------9999988569----879996487567613630345765302115775--1588899
Q gi|254780627|r 275 -LIQHE---FC-------------HLLNSLLDSA----KQVVAAADRPPSELESLDPRIRSRLQGGVSVPL--GLHDYEM 331 (502)
Q Consensus 275 -~tqee---~f-------------~~~n~l~~~g----kqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i--~~Pd~e~ 331 (502)
T Consensus 196 LKVLEDRKVFLdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIp---PAlRSR-----C~EIFFR~L~~EE 267 (532)
T TIGR02902 196 LKVLEDRKVFLDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIP---PALRSR-----CVEIFFRPLLKEE 267 (532)
T ss_pred HHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCC---HHHHCC-----CEEEEECCCCHHH
T ss_conf 11330222000012358777865427899720678734012133369877678---346505-----2267716888789
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHHHHHC--C-CCCHHHHHHHH
Q ss_conf 99999999988643116897898999999850278889999999999--9986302--4-68778899999
Q gi|254780627|r 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL--VFRHSFA--P-ILTAEIADELL 397 (502)
Q Consensus 332 r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l--~~~~~~~--~-~~~~~~~~~~l 397 (502)
T Consensus 268 i~~iAk~-----AaeKIg~~l~~~Al~~I~~-Ya~nGRE---AvN~~QLAaG~a~~E~Rk~I~~~DieWV~ 329 (532)
T TIGR02902 268 IKEIAKN-----AAEKIGLNLEKEALDLIAK-YASNGRE---AVNLVQLAAGIALGENRKRILAEDIEWVI 329 (532)
T ss_pred HHHHHHH-----HHHHCCCCCCHHHHHHHHH-HHCCCCH---HHHHHHHHHHHEECCCCCEECHHHHHHHH
T ss_conf 9999876-----5653046547547999998-7405406---77899997314012887612054644555