HHsearch alignment for GI: 254780627 and conserved domain: TIGR03305
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=91.88 E-value=0.22 Score=29.86 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=27.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf 8986278888579999999999863068816864698
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e 235 (502)
T Consensus 141 ~gIfggaGvGKT~Ll~e~i~n~~~~~~~v~V~~~IGE 177 (449)
T TIGR03305 141 AGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGE 177 (449)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 5665279998410189999865641488689999745