HHsearch alignment for GI: 254780627 and conserved domain: TIGR03346

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.50  E-value=8.4e-05  Score=54.14  Aligned_cols=178  Identities=19%  Similarity=0.270  Sum_probs=112.8

Q ss_pred             HHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHC-----CCCCEEEEEHHHHHHH
Q ss_conf             63288614789999999982410013655555489862788885799999999998630-----6881686469888999
Q gi|254780627|r  166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ-----PNLRVVYLTAEYFMWR  240 (502)
Q Consensus       166 nFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~-----~~~~v~y~~~e~F~~~  240 (502)
T Consensus       173 DpviGRd~Ei~-----r~i~IL~Rr---~KNNpi-LVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~LDlg----~  239 (852)
T TIGR03346       173 DPVIGRDEEIR-----RTIQVLSRR---TKNNPV-LIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG----A  239 (852)
T ss_pred             CCCCCCHHHHH-----HHHHHHHHH---CCCCCC-EECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEHH----H
T ss_conf             97738369999-----999999873---248972-1279998799999999999866999978851851275288----7


Q ss_pred             HHHHHH-CCCHHH-HHHH---HHHCC---HHHHHHHHHHCCC--C-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCC-C
Q ss_conf             999986-198899-9999---74031---0205444453175--0-69999999999885698799964875676136-3
Q gi|254780627|r  241 FASAIR-DNCALN-LKDS---LRNID---LLLIDDMQFLQGK--L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELES-L  308 (502)
Q Consensus       241 ~~~a~~-~~~~~~-fr~~---~r~~D---vLliDDiqfl~gk--~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~-l  308 (502)
T Consensus       240 LvAGtkyRGeFEeRlk~ii~ev~~~~~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLarGelr~IgAT-T~~EYrk~i  318 (852)
T TIGR03346       240 LIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGAT-TLDEYRKYI  318 (852)
T ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC-CHHHHHHHH
T ss_conf             7521530078999999999999858998799961255532688766641067774378747985599827-899999883


Q ss_pred             --CHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             --03457653021157751588899999999999886431168978989999998
Q gi|254780627|r  309 --DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA  361 (502)
Q Consensus       309 --~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la  361 (502)
T Consensus       319 EkD~AL~RRFq---~I~V~EPs~e~t~~IL~gl-~~~yE~hH~V~i~d~Ai~aav  369 (852)
T TIGR03346       319 EKDAALERRFQ---PVFVDEPTVEDTISILRGL-KERYEVHHGVRITDPAIVAAA  369 (852)
T ss_pred             HCCHHHHHHCC---CCCCCCCCHHHHHHHHHHH-HHHHHHCCCCEECHHHHHHHH
T ss_conf             22688997377---1204799868999999976-999976279267399999999