HHsearch alignment for GI: 254780627 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.37 E-value=1.7e-05 Score=59.01 Aligned_cols=225 Identities=16% Similarity=0.230 Sum_probs=139.4
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHH------HCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 764478876328861478999999998------24100136555554898627888857999999999986306881686
Q gi|254780627|r 158 LDSRFVFSTFIEGSSNRVALTAAQSIA------EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 (502)
Q Consensus 158 LNpryTFDnFVVG~sN~lA~aAAkaVA------e~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y 231 (502)
T Consensus 557 ~~Le~~L~~rViGQd~AI~-~I~~aI~~sraGL~dp~rP~-----GsFlf~GptGvGKTELAKaLAe~Lfg~--~~~LIr 628 (852)
T TIGR03346 557 LHMEEVLHERVVGQDEAVE-AVSDAIRRSRAGLSDPNRPI-----GSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVR 628 (852)
T ss_pred HHHHHHHHHHHCCHHHHHH-HHHHHHHHHHCCCCCCCCCC-----EEEEEECCCCCCHHHHHHHHHHHHHCC--CCCEEE
T ss_conf 8788889989717099999-99999999971888899974-----589986788776899999999998558--520698
Q ss_pred EEHHHHHHHH-HHHHHC-----------CCH-HHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHHCC-----
Q ss_conf 4698889999-999861-----------988-999999740310205444453175069999999999--88569-----
Q gi|254780627|r 232 LTAEYFMWRF-ASAIRD-----------NCA-LNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNS--LLDSA----- 291 (502)
Q Consensus 232 ~~~e~F~~~~-~~a~~~-----------~~~-~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~--l~~~g----- 291 (502)
T Consensus 629 iDMSEy~E~hsvsrLiGaPPGYVGy~egG~Lte~vr--~~PysVvL~DEIEK-Ah~~V~~~lLQilD~G~ltD~~Gr~vd 705 (852)
T TIGR03346 629 IDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVR--RKPYSVVLFDEVEK-AHPDVFNVLLQVLDDGRLTDGQGRTVD 705 (852)
T ss_pred ECHHHHCCHHHHHHHCCCCCCCCCCCCCCEECHHHH--HCCCEEEEECCHHH-HCHHHHHHHHHHHCCCEEECCCCCEEE
T ss_conf 430443012247785589997677687874239898--19887998530543-076899999988236743079998885
Q ss_pred ---CEEEEECCCCHHHHC---------------------CCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHH--
Q ss_conf ---879996487567613---------------------630345765302115775158889999999999988643--
Q gi|254780627|r 292 ---KQVVAAADRPPSELE---------------------SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK-- 345 (502)
Q Consensus 292 ---kqiv~tsd~~P~~l~---------------------~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~-- 345 (502)
T Consensus 706 F~NtiiimTSN~Ga~~i~~~~~~~~~~~~~~~~~~~~~~~F~PEflnRid~--ii~F~~L~~~~l~~I~~~~l~~l~~~l 783 (852)
T TIGR03346 706 FRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDE--IVVFHPLGREQIARIVEIQLGRLRKRL 783 (852)
T ss_pred EEEEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCE--EEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 355689861540659997411455579999999999996589989963786--898378999999999999999999999
Q ss_pred --HCCCCCCCHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
Q ss_conf --116897898999999850278---88999999999999863024687788999998763037
Q gi|254780627|r 346 --EDPKLNINEEVLMHVARTVTT---SGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTG 404 (502)
Q Consensus 346 --~~~~~~l~~~v~~~la~~~~~---~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 404 (502)
T Consensus 784 ~~~~i~l~~~~~~~~~l~~~g~~~~~GAR~l~r~i~~~i---------~~~la~~iL~g~~~~g 838 (852)
T TIGR03346 784 AERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREI---------ENPLAKKILAGEVADG 838 (852)
T ss_pred HHCCCEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHH---------HHHHHHHHHCCCCCCC
T ss_conf 977984998889999999848897747156999999998---------8999999974888995