HHsearch alignment for GI: 254780627 and conserved domain: TIGR03346

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.37  E-value=1.7e-05  Score=59.01  Aligned_cols=225  Identities=16%  Similarity=0.230  Sum_probs=139.4

Q ss_pred             CCCHHHHHHHCCCCCHHHHHHHHHHHH------HCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             764478876328861478999999998------24100136555554898627888857999999999986306881686
Q gi|254780627|r  158 LDSRFVFSTFIEGSSNRVALTAAQSIA------EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY  231 (502)
Q Consensus       158 LNpryTFDnFVVG~sN~lA~aAAkaVA------e~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y  231 (502)
T Consensus       557 ~~Le~~L~~rViGQd~AI~-~I~~aI~~sraGL~dp~rP~-----GsFlf~GptGvGKTELAKaLAe~Lfg~--~~~LIr  628 (852)
T TIGR03346       557 LHMEEVLHERVVGQDEAVE-AVSDAIRRSRAGLSDPNRPI-----GSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVR  628 (852)
T ss_pred             HHHHHHHHHHHCCHHHHHH-HHHHHHHHHHCCCCCCCCCC-----EEEEEECCCCCCHHHHHHHHHHHHHCC--CCCEEE
T ss_conf             8788889989717099999-99999999971888899974-----589986788776899999999998558--520698


Q ss_pred             EEHHHHHHHH-HHHHHC-----------CCH-HHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHHCC-----
Q ss_conf             4698889999-999861-----------988-999999740310205444453175069999999999--88569-----
Q gi|254780627|r  232 LTAEYFMWRF-ASAIRD-----------NCA-LNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNS--LLDSA-----  291 (502)
Q Consensus       232 ~~~e~F~~~~-~~a~~~-----------~~~-~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~--l~~~g-----  291 (502)
T Consensus       629 iDMSEy~E~hsvsrLiGaPPGYVGy~egG~Lte~vr--~~PysVvL~DEIEK-Ah~~V~~~lLQilD~G~ltD~~Gr~vd  705 (852)
T TIGR03346       629 IDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVR--RKPYSVVLFDEVEK-AHPDVFNVLLQVLDDGRLTDGQGRTVD  705 (852)
T ss_pred             ECHHHHCCHHHHHHHCCCCCCCCCCCCCCEECHHHH--HCCCEEEEECCHHH-HCHHHHHHHHHHHCCCEEECCCCCEEE
T ss_conf             430443012247785589997677687874239898--19887998530543-076899999988236743079998885


Q ss_pred             ---CEEEEECCCCHHHHC---------------------CCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHH--
Q ss_conf             ---879996487567613---------------------630345765302115775158889999999999988643--
Q gi|254780627|r  292 ---KQVVAAADRPPSELE---------------------SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK--  345 (502)
Q Consensus       292 ---kqiv~tsd~~P~~l~---------------------~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~--  345 (502)
T Consensus       706 F~NtiiimTSN~Ga~~i~~~~~~~~~~~~~~~~~~~~~~~F~PEflnRid~--ii~F~~L~~~~l~~I~~~~l~~l~~~l  783 (852)
T TIGR03346       706 FRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDE--IVVFHPLGREQIARIVEIQLGRLRKRL  783 (852)
T ss_pred             EEEEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCE--EEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             355689861540659997411455579999999999996589989963786--898378999999999999999999999


Q ss_pred             --HCCCCCCCHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
Q ss_conf             --116897898999999850278---88999999999999863024687788999998763037
Q gi|254780627|r  346 --EDPKLNINEEVLMHVARTVTT---SGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTG  404 (502)
Q Consensus       346 --~~~~~~l~~~v~~~la~~~~~---~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~~~  404 (502)
T Consensus       784 ~~~~i~l~~~~~~~~~l~~~g~~~~~GAR~l~r~i~~~i---------~~~la~~iL~g~~~~g  838 (852)
T TIGR03346       784 AERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREI---------ENPLAKKILAGEVADG  838 (852)
T ss_pred             HHCCCEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHH---------HHHHHHHHHCCCCCCC
T ss_conf             977984998889999999848897747156999999998---------8999999974888995