HHsearch alignment for GI: 254780627 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=100.00 E-value=0 Score=387.50 Aligned_cols=219 Identities=24% Similarity=0.320 Sum_probs=200.7
Q ss_pred CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf 55764478876328861478999999998241001365555548986278888579999999999863068816864698
Q gi|254780627|r 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 (502)
Q Consensus 156 s~LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e 235 (502)
T Consensus 6 ~~l~~~~tfdnFi~~~-N~~~~~~l~~~~~~~~~-------~~l~i~G~~GsGKTHLl~a~~~~~~~~--~~~~~yl~~~ 75 (226)
T TIGR03420 6 VGLPDDPTFDNFYAGG-NAELLAALRQLAAGKGD-------RFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLA 75 (226)
T ss_pred CCCCCCCCHHCCCCCC-HHHHHHHHHHHHHCCCC-------CEEEEECCCCCCHHHHHHHHHHHHHCC--CCCEEEECHH
T ss_conf 9999987631236586-79999999987646688-------869998999998899999999998626--9957995299
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHH
Q ss_conf 889999999861988999999740310205444453175-0699999999998856987999648756761363034576
Q gi|254780627|r 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 (502)
Q Consensus 236 ~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~S 314 (502)
T Consensus 76 ~~~~~~~~~l---------~~l~~~d~l~iDDi~~i~~~~~~e~~lF~l~N~~~~~~~~ilits~~~p~~l~~~l~dL~S 146 (226)
T TIGR03420 76 ELAQADPEVL---------EGLEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT 146 (226)
T ss_pred HHHHHHHHHH---------HHCCCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHCCCCHHHHHH
T ss_conf 9877539999---------7274489999966333437837899999999999865282898678882320320177999
Q ss_pred HHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-CCCCCHHHH
Q ss_conf 5302115775158889999999999988643116897898999999850278889999999999998630-246877889
Q gi|254780627|r 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 (502)
Q Consensus 315 R~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~-~~~~~~~~~ 393 (502)
T Consensus 147 Rl~~~~~~~I~~pdd~~~~~iL~k~-----~~~r~i~i~~~vi~yl~~r~~R~~~~l~~~l~~Ld~~sl~~kr~ITi~l~ 221 (226)
T TIGR03420 147 RLAWGLVFQLPPLSDEEKIAALQSR-----AARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFV 221 (226)
T ss_pred HHHCCCEEECCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 9968856852799999999999999-----99859988999999999863798999999999999999980899999999
Q ss_pred HHHHH
Q ss_conf 99998
Q gi|254780627|r 394 DELLS 398 (502)
Q Consensus 394 ~~~l~ 398 (502)
T Consensus 222 kevLa 226 (226)
T TIGR03420 222 KEVLA 226 (226)
T ss_pred HHHHC
T ss_conf 99849