HHsearch alignment for GI: 254780627 and conserved domain: cd00009
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.21 E-value=2.3e-10 Score=93.64 Aligned_cols=116 Identities=28% Similarity=0.351 Sum_probs=85.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCC----HHHHHHHHHHCCHHHHHHHHHHC
Q ss_conf 54898627888857999999999986306881686469888999999986198----89999997403102054444531
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC----ALNLKDSLRNIDLLLIDDMQFLQ 272 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~----~~~fr~~~r~~DvLliDDiqfl~ 272 (502)
T Consensus 20 ~~ill~GppGtGKT~la~~ia~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l- 96 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL- 96 (151)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC--CCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHC-
T ss_conf 8089989999886599999999712--1379827854777046777757605778898999999769986982016655-
Q ss_pred CCCHHHHHHHHHHHHHH-----CCCEEEEECCCCHHHHCCCCHHHHHHHH
Q ss_conf 75069999999999885-----6987999648756761363034576530
Q gi|254780627|r 273 GKLIQHEFCHLLNSLLD-----SAKQVVAAADRPPSELESLDPRIRSRLQ 317 (502)
Q Consensus 273 gk~tqee~f~~~n~l~~-----~gkqiv~tsd~~P~~l~~l~~rL~SR~~ 317 (502)
T Consensus 97 ~~~~~~~~~~~l~~~~~~~~~~~~~~vI~~tn~~~~--~~~~~~~~~R~~ 144 (151)
T cd00009 97 SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL--GDLDRALYDRLD 144 (151)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCC--CCHHHHHHCCCC
T ss_conf 999999999999871575406788899995289988--683776425598