HHsearch alignment for GI: 254780627 and conserved domain: cd01121
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.64 E-value=0.011 Score=39.12 Aligned_cols=98 Identities=24% Similarity=0.331 Sum_probs=64.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH-HHHHH------------CCCHHHHHHHH--HHCCHH
Q ss_conf 8986278888579999999999863068816864698889999-99986------------19889999997--403102
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF-ASAIR------------DNCALNLKDSL--RNIDLL 263 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~-~~a~~------------~~~~~~fr~~~--r~~DvL 263 (502)
T Consensus 85 vLlgGePGIGKSTLLLQia~~la~~--~~~vLYvSGEES~~QIk~RA~RLg~~~~~l~l~set~le~Il~~i~~~kP~~l 162 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDLV 162 (372)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCEE
T ss_conf 9982599886889999999999863--99389982456789999899985878877278843569999999997199889
Q ss_pred HHHHHHHHC--------CCCHH-HH-HHHHHHHHHHCCCEEEEEC
Q ss_conf 054444531--------75069-99-9999999885698799964
Q gi|254780627|r 264 LIDDMQFLQ--------GKLIQ-HE-FCHLLNSLLDSAKQVVAAA 298 (502)
Q Consensus 264 liDDiqfl~--------gk~tq-ee-~f~~~n~l~~~gkqiv~ts 298 (502)
T Consensus 163 IIDSIQT~~~~~~~s~pGsvsQVReca~~L~~~AK~~~i~~~lVG 207 (372)
T cd01121 163 IIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVG 207 (372)
T ss_pred EEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 995622020377677998789999999999999986197399998