HHsearch alignment for GI: 254780627 and conserved domain: cd01123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.98 E-value=0.0032 Score=42.90 Aligned_cols=42 Identities=26% Similarity=0.236 Sum_probs=29.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH----HCCCCCEEEEEHHH-HHHH
Q ss_conf 898627888857999999999986----30688168646988-8999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIK----RQPNLRVVYLTAEY-FMWR 240 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~----~~~~~~v~y~~~e~-F~~~ 240 (502)
T Consensus 22 tEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE~~f~~~ 68 (235)
T cd01123 22 TEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPE 68 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
T ss_conf 99999999849999999999984247536789629999536775889