HHsearch alignment for GI: 254780627 and conserved domain: cd01128
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.17 E-value=0.0075 Score=40.27 Aligned_cols=47 Identities=34% Similarity=0.381 Sum_probs=35.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE-EHHHH--HHHHHHHH
Q ss_conf 8986278888579999999999863068816864-69888--99999998
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL-TAEYF--MWRFASAI 245 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~-~~e~F--~~~~~~a~ 245 (502)
T Consensus 19 ~gI~g~~gvGKT~Ll~~i~~~~~~~~~~~~~v~~lIGER~rEv~e~~~~~ 68 (249)
T cd01128 19 GLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHH
T ss_conf 78878999889999999999999858984999999716579999999971