HHsearch alignment for GI: 254780627 and conserved domain: cd01393
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.11 E-value=0.0029 Score=43.25 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=46.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHC----CCCCEEEEEHHH-HHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCC
Q ss_conf 89862788885799999999998630----688168646988-8999999986198899999974031020544445317
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQ----PNLRVVYLTAEY-FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~----~~~~v~y~~~e~-F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~g 273 (502)
T Consensus 22 tEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE~~f~~~rl~~i~~~~~~~~~~--------~l~~i~~~~~ 93 (226)
T cd01393 22 TEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEE--------VLDNIYVARP 93 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCHHH--------HHHHEEEECC
T ss_conf 99999999989999999999985422116999619999557753199999998760326677--------6433368437
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 5069999999999885
Q gi|254780627|r 274 KLIQHEFCHLLNSLLD 289 (502)
Q Consensus 274 k~tqee~f~~~n~l~~ 289 (502)
T Consensus 94 -~~~e~~~~~~~~l~~ 108 (226)
T cd01393 94 -YNGEQQLEIVEELER 108 (226)
T ss_pred -CCHHHHHHHHHHHHH
T ss_conf -999999999999998