HHsearch alignment for GI: 254780627 and conserved domain: cd01394

>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

Probab=97.19  E-value=0.0027  Score=43.50  Aligned_cols=39  Identities=21%  Similarity=0.280  Sum_probs=32.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
Q ss_conf             48986278888579999999999863068816864698889
Q gi|254780627|r  198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM  238 (502)
Q Consensus       198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~  238 (502)
T Consensus        21 it~i~G~pG~GKStl~lq~a~~~~~~--g~~v~YidtE~~~   59 (218)
T cd01394          21 VTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLS   59 (218)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEECCCCC
T ss_conf             99998999984999999999998636--9869999665567