HHsearch alignment for GI: 254780627 and conserved domain: cd03223

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.24  E-value=0.034  Score=35.63  Aligned_cols=103  Identities=17%  Similarity=0.254  Sum_probs=55.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHH------CCCCCEEEEEHHHHH-----HH-HHHH----HHCC---CHHHHHHHHH
Q ss_conf             48986278888579999999999863------068816864698889-----99-9999----8619---8899999974
Q gi|254780627|r  198 PLFIHASVGLGKTHLLQAIANASIKR------QPNLRVVYLTAEYFM-----WR-FASA----IRDN---CALNLKDSLR  258 (502)
Q Consensus       198 PLfi~G~~GlGKTHLl~ai~~~~~~~------~~~~~v~y~~~e~F~-----~~-~~~a----~~~~---~~~~fr~~~r  258 (502)
T Consensus        29 ~v~i~G~sGsGKSTLl~~l~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tl~e~l~~p~~~~LSGGqkQRvalARal~~  108 (166)
T cd03223          29 RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLLLH  108 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             99999589998899999986987699867997699879998564665887599996361546789999999999999964


Q ss_pred             HCCHHHHHHHHHHCC--CCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHC
Q ss_conf             031020544445317--506999999999988569879996487567613
Q gi|254780627|r  259 NIDLLLIDDMQFLQG--KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELE  306 (502)
Q Consensus       259 ~~DvLliDDiqfl~g--k~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~  306 (502)
T Consensus       109 ~p~iliLDEp--Ts~LD~~~~~~l~~~---l~~~~~Tvi~VtH~-~~~~~  152 (166)
T cd03223         109 KPKFVFLDEA--TSALDEESEDRLYQL---LKELGITVISVGHR-PSLWK  152 (166)
T ss_pred             CCCEEEECCC--CCCCCHHHHHHHHHH---HHHCCCEEEEEECC-HHHHH
T ss_conf             9999997585--332899999999999---99779989999434-69997