HHsearch alignment for GI: 254780627 and conserved domain: cd03227

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=94.60  E-value=0.11  Score=31.97  Aligned_cols=108  Identities=19%  Similarity=0.158  Sum_probs=57.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHH-----------HHHHCCCHHHH---HHHH-----H
Q ss_conf             489862788885799999999998630688168646988899999-----------99861988999---9997-----4
Q gi|254780627|r  198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA-----------SAIRDNCALNL---KDSL-----R  258 (502)
Q Consensus       198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~-----------~a~~~~~~~~f---r~~~-----r  258 (502)
T Consensus        23 ~~iItGpN~sGKSt~Lr~i~l~~~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l-Sgg~~~~~~l~~~l~~~~~~   98 (162)
T cd03227          23 LTIITGPNGSGKSTILDAIGLALGGAQSATRR---RSGVKAGCIVAAVSAELIFTRLQL-SGGEKELSALALILALASLK   98 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCC---CHHHHCCCCCHHHEEEEEECCCCC-CCCHHHHHHHHHHHHHCCCC
T ss_conf             89998998775799999999999986326775---255542776402305766412000-54299999999999854248


Q ss_pred             HCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHH
Q ss_conf             03102054444531750--69999999999885698799964875676136303457
Q gi|254780627|r  259 NIDLLLIDDMQFLQGKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR  313 (502)
Q Consensus       259 ~~DvLliDDiqfl~gk~--tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~  313 (502)
T Consensus        99 ~~~lillDE~--~~Gtd~~~~~~l~~~i~~~~~~~~~~i~tTH~--~eL~~lad~~~  151 (162)
T cd03227          99 PRPLYILDEI--DRGLDPRDGQALAEAILEHLVKGAQVIVITHL--PELAELADKLI  151 (162)
T ss_pred             CCCEEEECCC--CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHHHHHC
T ss_conf             9848996365--57999889999999999999769989997973--99999987500