HHsearch alignment for GI: 254780627 and conserved domain: cd03227
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=94.60 E-value=0.11 Score=31.97 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=57.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHH-----------HHHHCCCHHHH---HHHH-----H
Q ss_conf 489862788885799999999998630688168646988899999-----------99861988999---9997-----4
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA-----------SAIRDNCALNL---KDSL-----R 258 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~-----------~a~~~~~~~~f---r~~~-----r 258 (502)
T Consensus 23 ~~iItGpN~sGKSt~Lr~i~l~~~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l-Sgg~~~~~~l~~~l~~~~~~ 98 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRR---RSGVKAGCIVAAVSAELIFTRLQL-SGGEKELSALALILALASLK 98 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCC---CHHHHCCCCCHHHEEEEEECCCCC-CCCHHHHHHHHHHHHHCCCC
T ss_conf 89998998775799999999999986326775---255542776402305766412000-54299999999999854248
Q ss_pred HCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHH
Q ss_conf 03102054444531750--69999999999885698799964875676136303457
Q gi|254780627|r 259 NIDLLLIDDMQFLQGKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 (502)
Q Consensus 259 ~~DvLliDDiqfl~gk~--tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~ 313 (502)
T Consensus 99 ~~~lillDE~--~~Gtd~~~~~~l~~~i~~~~~~~~~~i~tTH~--~eL~~lad~~~ 151 (162)
T cd03227 99 PRPLYILDEI--DRGLDPRDGQALAEAILEHLVKGAQVIVITHL--PELAELADKLI 151 (162)
T ss_pred CCCEEEECCC--CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHHHHHC
T ss_conf 9848996365--57999889999999999999769989997973--99999987500