HHsearch alignment for GI: 254780627 and conserved domain: cd03228
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.02 Score=37.24 Aligned_cols=103 Identities=22% Similarity=0.327 Sum_probs=62.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCC-----------------CCEEEEEHHHHHHHHHHHHHCC--------CHHH
Q ss_conf 48986278888579999999999863068-----------------8168646988899999998619--------8899
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPN-----------------LRVVYLTAEYFMWRFASAIRDN--------CALN 252 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~-----------------~~v~y~~~e~F~~~~~~a~~~~--------~~~~ 252 (502)
T Consensus 30 ~i~ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l--f~~tv~eNiLSgGq~Qri~l 107 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFL--FSGTIRENILSGGQRQRIAI 107 (171)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCC--CCCCHHHHCCCHHHHHHHHH
T ss_conf 9999999998399999999767758974899999998859989986318999666843--75779997744889999999
Q ss_pred HHHHHHHCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHC
Q ss_conf 9999740310205444453175--06999999999988569879996487567613
Q gi|254780627|r 253 LKDSLRNIDLLLIDDMQFLQGK--LIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 (502)
Q Consensus 253 fr~~~r~~DvLliDDiqfl~gk--~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~ 306 (502)
T Consensus 108 ARal~~~p~illlDEp--ts~LD~~~~~~i~~~l~~~~-~~~Tvi~vtH~-~~~~~ 159 (171)
T cd03228 108 ARALLRDPPILILDEA--TSALDPETEALILEALRALA-KGKTVIVIAHR-LSTIR 159 (171)
T ss_pred HHHHHHCCCEEEEECC--CCCCCHHHHHHHHHHHHHHC-CCCEEEEEECC-HHHHH
T ss_conf 9999748998999577--66799899999999999980-99989999579-99997