HHsearch alignment for GI: 254780627 and conserved domain: cd03237
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.92 E-value=0.24 Score=29.60 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 89862788885799999999998
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASI 221 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~ 221 (502)
T Consensus 28 v~liGpNGaGKSTLlk~l~Gll~ 50 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99997999769999999977878