HHsearch alignment for GI: 254780627 and conserved domain: cd03239

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=90.51  E-value=0.83  Score=25.78  Aligned_cols=24  Identities=25%  Similarity=0.198  Sum_probs=19.8

Q ss_conf             898627888857999999999986
Q gi|254780627|r  199 LFIHASVGLGKTHLLQAIANASIK  222 (502)
Q Consensus       199 Lfi~G~~GlGKTHLl~ai~~~~~~  222 (502)
T Consensus        25 ~~ivG~nGsGKSni~~ai~~~~g~   48 (178)
T cd03239          25 NAIVGPNGSGKSNIVDAICFVLGG   48 (178)
T ss_conf             799899988778999999999866