HHsearch alignment for GI: 254780627 and conserved domain: cd03247

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.30  E-value=0.016  Score=37.96  Aligned_cols=107  Identities=17%  Similarity=0.293  Sum_probs=59.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCC----------------CEEEEEHHHHHHHHHHHHHCC-----------CH
Q ss_conf             489862788885799999999998630688----------------168646988899999998619-----------88
Q gi|254780627|r  198 PLFIHASVGLGKTHLLQAIANASIKRQPNL----------------RVVYLTAEYFMWRFASAIRDN-----------CA  250 (502)
Q Consensus       198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~----------------~v~y~~~e~F~~~~~~a~~~~-----------~~  250 (502)
T Consensus        30 ~~aivG~sGsGKSTLl~~l~G~~~p~~G~i~i~g~~i~~~~~~~~~~i~~v~Q~~~l--f~~ti~~nlg~~LSgGqkqRv  107 (178)
T cd03247          30 KIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYL--FDTTLRNNLGRRFSGGERQRL  107 (178)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCEEHHHHHHHHHHHEEEECCCCCC--CCCHHHHHCCCCCCHHHHHHH
T ss_conf             999999998759999999986176678869999998899789999720898355636--454199862888899999999


Q ss_pred             HHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCC
Q ss_conf             9999997403102054444531750699999999998856987999648756761363
Q gi|254780627|r  251 LNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL  308 (502)
Q Consensus       251 ~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l  308 (502)
T Consensus       108 ~iAral~~~p~ililDEpts~LD~~t~~~i~~~l~~~~-~~~Tvi~itH~~-~~l~~~  163 (178)
T cd03247         108 ALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHL-TGIEHM  163 (178)
T ss_pred             HHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCH-HHHHHC
T ss_conf             99999964979767228655699899999999999983-999999980589-899869