HHsearch alignment for GI: 254780627 and conserved domain: cd03252
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=93.94 E-value=0.12 Score=31.67 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8986278888579999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~ 220 (502)
T Consensus 31 vaivG~sGsGKSTll~ll~gl~ 52 (237)
T cd03252 31 VGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999985999999996776