HHsearch alignment for GI: 254780627 and conserved domain: cd06571
>cd06571 Bac_DnaA_C C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Probab=99.93 E-value=1.5e-25 Score=201.65 Aligned_cols=90 Identities=51% Similarity=0.752 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHCCCCCHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 89999999998099999940888774014457999999998515687899988479843799999999999986169999
Q gi|254780627|r 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 (502)
Q Consensus 411 ~~~I~~~V~~~~~i~~~~l~s~~R~~~i~~~RqiamyL~r~~t~~s~~~IG~~fg~rdHsTV~~a~~ki~~~~~~d~~~~ 490 (502)
T Consensus 1 ~d~I~~~Va~~~~v~~~~i~~~~R~~~~~~aR~ia~yL~r~~~~~s~~~Ig~~fg~rdHsTV~~a~~kv~~~~~~d~~~~ 80 (90)
T cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80 (90)
T ss_pred CHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_conf 98899999999799899984698871378999999999999978899999999589971499999999999998399999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999874
Q gi|254780627|r 491 KEVELLKRLI 500 (502)
Q Consensus 491 ~~i~~i~~~i 500 (502)
T Consensus 81 ~~v~~i~~~l 90 (90)
T cd06571 81 EDVEELEKKL 90 (90)
T ss_pred HHHHHHHHCC
T ss_conf 9999999719