Query gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 502
No_of_seqs 182 out of 1914
Neff 6.6
Searched_HMMs 39220
Date Sun May 29 21:20:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780627.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00149 dnaA chromosomal repl 100.0 0 0 1049.1 50.5 445 35-502 1-447 (447)
2 PRK12422 chromosomal replicati 100.0 0 0 1011.4 47.0 437 37-501 2-444 (455)
3 COG0593 DnaA ATPase involved i 100.0 0 0 891.5 42.9 406 39-498 1-408 (408)
4 TIGR00362 DnaA chromosomal rep 100.0 0 0 615.3 33.4 458 33-500 2-493 (493)
5 pfam00308 Bac_DnaA Bacterial d 100.0 0 0 458.6 23.8 218 158-385 1-219 (219)
6 PRK08084 DNA replication initi 100.0 0 0 395.4 23.7 220 155-398 12-234 (235)
7 TIGR03420 DnaA_homol_Hda DnaA 100.0 0 0 387.5 22.2 219 156-398 6-226 (226)
8 PRK05642 DNA replication initi 100.0 0 0 385.0 23.7 223 155-398 9-233 (234)
9 PRK08903 hypothetical protein; 100.0 0 0 368.1 20.2 216 155-399 8-225 (227)
10 PRK06893 DNA replication initi 100.0 1.5E-44 0 336.5 22.0 217 157-398 8-228 (229)
11 PRK08727 hypothetical protein; 100.0 1.1E-42 0 323.4 22.4 218 157-399 11-230 (233)
12 PRK06620 hypothetical protein; 100.0 1.7E-34 4.4E-39 265.1 17.0 207 156-398 7-214 (214)
13 PRK09087 hypothetical protein; 100.0 1.4E-33 3.6E-38 258.5 19.7 211 156-401 12-223 (226)
14 PRK08116 hypothetical protein; 99.9 2E-24 5.1E-29 193.6 16.7 182 156-342 67-256 (262)
15 cd06571 Bac_DnaA_C C-terminal 99.9 1.5E-25 3.7E-30 201.6 10.8 90 411-500 1-90 (90)
16 pfam08299 Bac_DnaA_C domain. 99.9 2.9E-24 7.4E-29 192.4 7.9 70 410-479 1-70 (70)
17 PRK07952 DNA replication prote 99.9 7.1E-22 1.8E-26 175.4 14.5 171 155-332 56-236 (242)
18 PRK06835 DNA replication prote 99.9 1.7E-20 4.3E-25 165.7 15.8 151 174-333 166-321 (330)
19 PRK06921 hypothetical protein; 99.9 4E-20 1E-24 163.0 14.7 167 160-330 78-256 (265)
20 PRK06030 hypothetical protein; 99.8 2.2E-19 5.6E-24 157.8 10.4 89 411-501 37-126 (136)
21 PRK12377 putative replication 99.8 1.8E-18 4.5E-23 151.3 14.9 169 157-332 63-240 (248)
22 smart00760 Bac_DnaA_C Bacteria 99.8 2E-18 5E-23 151.0 7.1 60 410-469 1-60 (60)
23 pfam01695 IstB IstB-like ATP b 99.7 5.5E-17 1.4E-21 140.7 12.4 145 156-307 11-156 (178)
24 PRK08939 primosomal protein Dn 99.7 4.8E-16 1.2E-20 134.0 14.3 141 161-306 124-267 (306)
25 COG1484 DnaC DNA replication p 99.7 4E-16 1E-20 134.6 12.8 161 163-332 75-247 (254)
26 PRK08181 transposase; Validate 99.6 2.5E-14 6.4E-19 121.8 15.2 136 198-336 108-251 (269)
27 PRK06526 transposase; Provisio 99.6 2.6E-14 6.7E-19 121.7 12.8 132 197-331 99-238 (254)
28 PRK09183 transposase/IS protei 99.6 6.1E-14 1.6E-18 119.1 13.5 167 160-333 69-245 (258)
29 PRK13342 recombination factor 99.5 8.5E-12 2.2E-16 103.8 20.8 284 163-481 11-303 (417)
30 PRK00440 rfc replication facto 99.5 1.5E-10 3.9E-15 94.9 23.6 205 163-397 14-222 (318)
31 PRK00411 cdc6 cell division co 99.4 3.8E-10 9.8E-15 92.1 22.5 232 157-400 22-282 (394)
32 PRK00080 ruvB Holliday junctio 99.4 1E-10 2.6E-15 96.2 19.5 231 157-423 18-273 (328)
33 PRK04195 replication factor C 99.4 1.1E-10 2.7E-15 96.1 15.7 199 197-423 41-269 (403)
34 pfam05496 RuvB_N Holliday junc 99.3 2.1E-10 5.3E-15 94.0 15.5 196 158-384 18-231 (234)
35 PRK13341 recombination factor 99.3 6.9E-10 1.8E-14 90.3 17.9 285 158-480 22-325 (726)
36 PRK12402 replication factor C 99.3 5.5E-09 1.4E-13 83.9 20.2 189 163-375 13-227 (337)
37 COG2255 RuvB Holliday junction 99.2 3.2E-09 8.2E-14 85.5 18.0 230 158-422 20-273 (332)
38 PRK03992 proteasome-activating 99.2 2E-09 5.1E-14 87.0 16.1 186 199-402 169-375 (390)
39 cd00009 AAA The AAA+ (ATPases 99.2 2.3E-10 5.9E-15 93.6 10.8 116 197-317 20-144 (151)
40 COG2256 MGS1 ATPase related to 99.2 1.4E-08 3.6E-13 81.0 19.9 281 158-481 18-317 (436)
41 COG1474 CDC6 Cdc6-related prot 99.2 7.3E-09 1.8E-13 83.0 17.9 196 197-398 44-263 (366)
42 CHL00176 ftsH cell division pr 99.1 1E-08 2.6E-13 82.0 16.8 220 159-399 171-416 (631)
43 KOG0735 consensus 99.1 1.6E-08 4.2E-13 80.5 16.6 195 199-402 434-650 (952)
44 TIGR00635 ruvB Holliday juncti 99.0 5.3E-09 1.3E-13 84.0 10.9 205 163-400 2-229 (305)
45 TIGR03015 pepcterm_ATPase puta 99.0 6.8E-07 1.7E-11 69.0 20.9 219 158-400 17-266 (269)
46 PRK11388 DNA-binding transcrip 99.0 6E-08 1.5E-12 76.5 15.5 216 159-393 319-564 (639)
47 PRK10733 hflB ATP-dependent me 99.0 5.2E-08 1.3E-12 76.9 14.5 221 159-400 146-392 (644)
48 PRK05896 DNA polymerase III su 98.9 5.1E-08 1.3E-12 77.0 12.5 211 163-398 14-242 (613)
49 pfam03969 AFG1_ATPase AFG1-lik 98.9 1.4E-08 3.5E-13 81.0 9.6 106 199-309 64-177 (361)
50 KOG0730 consensus 98.9 1E-07 2.6E-12 74.9 12.8 163 199-377 221-396 (693)
51 PRK10820 DNA-binding transcrip 98.8 4.3E-07 1.1E-11 70.4 15.6 281 158-478 197-503 (513)
52 PRK08451 DNA polymerase III su 98.8 6E-07 1.5E-11 69.4 16.1 211 163-398 12-240 (523)
53 PRK06647 DNA polymerase III su 98.8 1.3E-06 3.4E-11 66.9 17.5 211 163-398 14-242 (560)
54 KOG0730 consensus 98.8 8E-07 2E-11 68.5 16.3 195 199-417 471-686 (693)
55 PRK06672 hypothetical protein; 98.8 2.3E-08 5.8E-13 79.5 8.3 74 38-112 4-77 (341)
56 PRK06305 DNA polymerase III su 98.8 3E-07 7.7E-12 71.5 13.7 211 163-398 15-244 (462)
57 COG1223 Predicted ATPase (AAA+ 98.8 1.6E-06 4.1E-11 66.3 17.2 200 157-379 113-331 (368)
58 PRK10923 glnG nitrogen regulat 98.8 4.3E-06 1.1E-10 63.3 19.3 283 168-474 140-461 (469)
59 CHL00195 ycf46 Ycf46; Provisio 98.8 2.3E-06 6E-11 65.2 17.5 190 199-402 262-465 (491)
60 PRK07133 DNA polymerase III su 98.8 4.3E-07 1.1E-11 70.4 13.2 211 163-398 16-241 (718)
61 PRK06645 DNA polymerase III su 98.8 1.4E-06 3.5E-11 66.8 15.8 213 163-398 19-254 (507)
62 PRK07270 DNA polymerase III su 98.7 1E-06 2.6E-11 67.8 14.8 212 163-398 13-242 (557)
63 PRK06674 DNA polymerase III su 98.7 6.2E-07 1.6E-11 69.3 13.6 211 163-398 14-242 (563)
64 PRK06672 hypothetical protein; 98.7 3.7E-08 9.4E-13 78.0 7.2 73 39-112 95-167 (341)
65 PRK05563 DNA polymerase III su 98.7 7.8E-07 2E-11 68.6 13.9 211 163-398 14-242 (541)
66 PRK11608 pspF phage shock prot 98.7 5E-07 1.3E-11 69.9 12.6 201 166-382 6-240 (325)
67 COG1485 Predicted ATPase [Gene 98.7 1.4E-07 3.6E-12 73.9 9.7 127 197-332 66-210 (367)
68 COG0464 SpoVK ATPases of the A 98.7 1.7E-06 4.2E-11 66.3 14.8 162 199-375 279-455 (494)
69 PRK11034 clpA ATP-dependent Cl 98.7 7.5E-06 1.9E-10 61.6 17.9 235 167-434 187-446 (758)
70 CHL00095 clpC Clp protease ATP 98.7 2.9E-05 7.4E-10 57.4 19.9 254 167-440 180-503 (823)
71 KOG0740 consensus 98.6 7.5E-07 1.9E-11 68.7 11.6 152 199-366 189-354 (428)
72 TIGR01243 CDC48 AAA family ATP 98.6 2.9E-06 7.3E-11 64.6 13.9 271 159-457 200-493 (980)
73 KOG0989 consensus 98.6 8E-06 2E-10 61.4 16.1 270 163-468 34-321 (346)
74 TIGR02928 TIGR02928 orc1/cdc6 98.5 7E-06 1.8E-10 61.8 14.3 300 157-501 7-359 (383)
75 PRK11361 acetoacetate metaboli 98.5 5.7E-06 1.4E-10 62.5 13.8 219 157-393 135-386 (457)
76 pfam00004 AAA ATPase family as 98.5 2.6E-07 6.5E-12 72.0 6.2 114 199-320 1-127 (131)
77 TIGR03346 chaperone_ClpB ATP-d 98.5 8.4E-05 2.1E-09 54.1 18.8 178 166-361 173-369 (852)
78 pfam05621 TniB Bacterial TniB 98.5 6.9E-05 1.7E-09 54.8 18.1 225 167-404 36-291 (302)
79 COG1373 Predicted ATPase (AAA+ 98.5 2.9E-05 7.3E-10 57.5 15.6 222 198-481 39-263 (398)
80 PRK10365 transcriptional regul 98.4 9.4E-06 2.4E-10 60.9 12.7 206 168-390 141-379 (441)
81 COG2812 DnaX DNA polymerase II 98.4 0.00016 4.1E-09 52.2 18.2 204 163-398 14-242 (515)
82 PRK08691 DNA polymerase III su 98.4 3.8E-05 9.6E-10 56.6 15.0 211 163-398 14-242 (704)
83 TIGR03345 VI_ClpV1 type VI sec 98.4 0.0002 5E-09 51.5 18.1 175 168-360 189-382 (852)
84 KOG0733 consensus 98.4 8.1E-06 2.1E-10 61.4 11.0 161 199-380 226-408 (802)
85 TIGR03346 chaperone_ClpB ATP-d 98.4 1.7E-05 4.4E-10 59.0 12.7 225 158-404 557-838 (852)
86 PRK05022 anaerobic nitric oxid 98.4 1E-05 2.6E-10 60.6 11.3 201 168-383 188-420 (510)
87 COG1222 RPT1 ATP-dependent 26S 98.4 1.7E-05 4.3E-10 59.1 12.4 158 199-377 188-367 (406)
88 pfam01637 Arch_ATPase Archaeal 98.3 6.2E-05 1.6E-09 55.1 14.7 166 196-372 20-221 (223)
89 KOG2028 consensus 98.3 2.5E-05 6.3E-10 57.9 12.6 241 197-462 163-429 (554)
90 PRK07003 DNA polymerase III su 98.3 3.5E-05 8.9E-10 56.9 13.4 211 163-398 14-242 (816)
91 PRK07764 DNA polymerase III su 98.3 1.7E-05 4.4E-10 59.0 11.5 212 163-398 13-244 (775)
92 PRK10865 protein disaggregatio 98.3 5.8E-05 1.5E-09 55.3 13.8 176 167-360 179-373 (857)
93 KOG0734 consensus 98.3 3.6E-05 9.1E-10 56.8 12.7 176 199-392 340-533 (752)
94 KOG0737 consensus 98.3 5.4E-05 1.4E-09 55.5 13.5 207 199-423 130-361 (386)
95 PRK06872 DNA polymerase III su 98.3 0.00013 3.2E-09 52.9 15.1 211 163-398 14-242 (696)
96 CHL00181 cbbX CbbX; Provisiona 98.3 7.7E-05 2E-09 54.4 13.9 173 198-381 61-253 (287)
97 PRK10865 protein disaggregatio 98.2 6.5E-05 1.7E-09 54.9 13.0 228 159-404 561-841 (857)
98 smart00382 AAA ATPases associa 98.2 4.6E-06 1.2E-10 63.1 6.8 102 197-300 3-125 (148)
99 TIGR03345 VI_ClpV1 type VI sec 98.2 0.00012 3.1E-09 53.0 14.0 233 158-411 558-850 (852)
100 KOG2227 consensus 98.2 6.8E-05 1.7E-09 54.8 12.3 226 198-449 177-436 (529)
101 KOG2383 consensus 98.2 5.4E-06 1.4E-10 62.6 6.5 104 198-305 116-238 (467)
102 COG1221 PspF Transcriptional r 98.2 0.00026 6.6E-09 50.7 15.0 211 158-384 71-311 (403)
103 pfam05673 DUF815 Protein of un 98.2 9.3E-05 2.4E-09 53.8 12.7 143 197-361 54-222 (248)
104 PRK12323 DNA polymerase III su 98.2 4.3E-05 1.1E-09 56.2 10.9 211 163-398 14-247 (721)
105 PRK09111 DNA polymerase III su 98.2 0.00026 6.6E-09 50.7 14.8 211 163-398 21-254 (600)
106 PRK07994 DNA polymerase III su 98.1 0.0004 1E-08 49.3 15.6 211 163-398 14-242 (643)
107 pfam07693 KAP_NTPase KAP famil 98.1 0.00094 2.4E-08 46.7 17.1 58 173-237 2-61 (301)
108 PRK08853 DNA polymerase III su 98.1 0.00015 3.9E-09 52.3 13.0 210 163-398 14-242 (717)
109 CHL00095 clpC Clp protease ATP 98.1 0.00029 7.3E-09 50.4 13.4 222 159-402 502-794 (823)
110 KOG0738 consensus 98.0 0.00079 2E-08 47.2 15.3 151 194-366 243-415 (491)
111 PRK10787 DNA-binding ATP-depen 98.0 0.00016 4E-09 52.2 11.6 178 198-382 351-555 (784)
112 TIGR01241 FtsH_fam ATP-depende 98.0 0.00013 3.2E-09 52.9 11.0 196 199-412 95-314 (505)
113 PRK11034 clpA ATP-dependent Cl 98.0 0.00021 5.4E-09 51.3 11.8 217 161-402 453-726 (758)
114 TIGR02397 dnaX_nterm DNA polym 98.0 3.6E-05 9.1E-10 56.8 7.8 210 163-398 12-242 (363)
115 PRK05564 DNA polymerase III su 98.0 0.0023 5.8E-08 44.0 17.9 179 163-376 2-192 (313)
116 KOG0741 consensus 98.0 0.00013 3.4E-09 52.8 10.2 265 146-431 200-503 (744)
117 CHL00081 chlI Mg-protoporyphyr 98.0 0.0027 6.8E-08 43.5 17.9 249 161-425 8-347 (347)
118 PRK07452 DNA polymerase III su 97.9 0.002 5E-08 44.4 15.8 181 200-398 5-197 (326)
119 PRK08533 flagellar accessory p 97.9 0.00028 7.1E-09 50.4 11.3 122 197-325 25-182 (230)
120 PTZ00112 origin recognition co 97.9 0.00015 3.9E-09 52.3 9.8 171 197-375 294-489 (650)
121 KOG0735 consensus 97.9 0.00068 1.7E-08 47.7 13.1 185 175-377 674-880 (952)
122 PRK05574 holA DNA polymerase I 97.9 0.00055 1.4E-08 48.3 12.5 270 197-496 16-310 (336)
123 TIGR02639 ClpA ATP-dependent C 97.9 0.001 2.7E-08 46.4 13.9 237 168-436 210-487 (774)
124 cd01124 KaiC KaiC is a circadi 97.9 0.00013 3.3E-09 52.8 8.9 103 200-304 3-143 (187)
125 KOG0744 consensus 97.9 0.0009 2.3E-08 46.8 13.2 191 158-356 131-354 (423)
126 COG0542 clpA ATP-binding subun 97.9 0.0013 3.4E-08 45.6 14.0 257 168-443 172-488 (786)
127 COG0542 clpA ATP-binding subun 97.9 0.0017 4.2E-08 44.9 14.3 227 158-399 483-762 (786)
128 COG3829 RocR Transcriptional r 97.8 0.00024 6E-09 51.0 9.3 204 158-381 238-478 (560)
129 PRK05648 DNA polymerase III su 97.8 0.00061 1.6E-08 48.0 11.3 211 163-398 14-242 (705)
130 KOG0728 consensus 97.8 0.0025 6.5E-08 43.6 14.1 199 199-413 184-401 (404)
131 KOG0731 consensus 97.8 0.0022 5.7E-08 44.0 13.7 223 159-399 305-552 (774)
132 PRK08770 DNA polymerase III su 97.8 0.00067 1.7E-08 47.8 11.0 211 163-398 14-242 (663)
133 KOG1514 consensus 97.8 0.0038 9.6E-08 42.4 14.8 197 198-402 424-657 (767)
134 pfam07728 AAA_5 AAA domain (dy 97.8 2.5E-05 6.4E-10 57.9 3.5 114 198-316 1-139 (139)
135 KOG1969 consensus 97.7 0.0066 1.7E-07 40.7 15.8 156 198-384 328-517 (877)
136 pfam05970 DUF889 PIF1 helicase 97.7 0.00014 3.5E-09 52.7 6.6 90 203-306 1-125 (418)
137 KOG2035 consensus 97.7 0.0076 1.9E-07 40.3 17.7 249 198-484 36-323 (351)
138 cd01120 RecA-like_NTPases RecA 97.6 0.00056 1.4E-08 48.3 8.8 72 199-272 2-98 (165)
139 KOG0733 consensus 97.6 0.00061 1.6E-08 48.0 8.9 151 199-365 548-713 (802)
140 COG2874 FlaH Predicted ATPases 97.6 0.00097 2.5E-08 46.6 9.8 118 199-324 31-186 (235)
141 PRK04841 transcriptional regul 97.6 0.0017 4.3E-08 44.9 10.6 39 443-485 845-883 (903)
142 KOG0651 consensus 97.5 0.00061 1.6E-08 48.0 8.2 150 199-366 169-339 (388)
143 PRK09361 radB DNA repair and r 97.5 0.00045 1.1E-08 49.0 7.4 46 199-246 26-71 (224)
144 pfam00158 Sigma54_activat Sigm 97.5 0.00019 4.8E-09 51.7 5.1 138 168-317 1-163 (168)
145 PRK05563 DNA polymerase III su 97.5 0.0016 4E-08 45.1 9.7 28 175-209 134-161 (541)
146 PRK06067 flagellar accessory p 97.5 0.0021 5.3E-08 44.2 10.1 49 197-247 33-81 (241)
147 pfam06745 KaiC KaiC. This fami 97.5 0.002 5.2E-08 44.3 9.9 49 197-247 20-69 (231)
148 PRK05703 flhF flagellar biosyn 97.4 0.00054 1.4E-08 48.4 6.7 111 198-312 212-342 (412)
149 KOG0736 consensus 97.4 0.014 3.5E-07 38.4 13.8 251 159-433 392-701 (953)
150 COG0466 Lon ATP-dependent Lon 97.4 0.0019 4.8E-08 44.6 9.0 195 175-382 336-557 (782)
151 PRK09112 DNA polymerase III su 97.4 0.0036 9.2E-08 42.5 10.4 187 163-375 21-242 (352)
152 COG2204 AtoC Response regulato 97.4 0.011 2.8E-07 39.1 12.8 199 168-383 143-375 (464)
153 COG0465 HflB ATP-dependent Zn 97.4 0.0025 6.4E-08 43.7 9.4 130 199-339 186-332 (596)
154 PRK05201 hslU ATP-dependent pr 97.3 0.019 4.8E-07 37.5 14.8 138 261-403 250-434 (442)
155 PRK07399 DNA polymerase III su 97.3 0.015 3.8E-07 38.1 13.2 181 164-376 3-223 (314)
156 TIGR02639 ClpA ATP-dependent C 97.3 0.0024 6.2E-08 43.8 9.0 204 165-397 496-760 (774)
157 KOG0727 consensus 97.3 0.009 2.3E-07 39.7 11.7 162 199-382 192-376 (408)
158 PRK07471 DNA polymerase III su 97.3 0.0056 1.4E-07 41.2 10.6 179 168-371 19-234 (363)
159 PRK06585 holA DNA polymerase I 97.3 0.022 5.6E-07 37.0 17.3 208 181-420 10-224 (343)
160 pfam00910 RNA_helicase RNA hel 97.3 0.00035 9E-09 49.7 4.2 58 199-270 1-60 (105)
161 pfam00625 Guanylate_kin Guanyl 97.2 0.0063 1.6E-07 40.8 10.4 114 197-338 2-133 (182)
162 TIGR01242 26Sp45 26S proteasom 97.2 0.0013 3.2E-08 45.8 6.6 183 199-420 159-362 (364)
163 COG1466 HolA DNA polymerase II 97.2 0.014 3.5E-07 38.4 11.9 118 275-400 90-207 (334)
164 pfam06144 DNA_pol3_delta DNA p 97.2 0.014 3.6E-07 38.3 11.8 165 200-379 2-171 (172)
165 cd01394 radB RadB. The archaea 97.2 0.0027 6.8E-08 43.5 8.0 39 198-238 21-59 (218)
166 TIGR02640 gas_vesic_GvpN gas v 97.2 0.00065 1.7E-08 47.8 4.6 172 188-384 14-233 (265)
167 PRK08058 DNA polymerase III su 97.1 0.019 4.8E-07 37.5 12.0 145 197-370 29-200 (329)
168 TIGR02782 TrbB_P P-type conjug 97.1 0.00082 2.1E-08 47.1 5.0 166 43-232 3-176 (315)
169 TIGR01243 CDC48 AAA family ATP 97.1 0.0042 1.1E-07 42.1 8.5 151 199-367 578-745 (980)
170 TIGR03499 FlhF flagellar biosy 97.1 0.0017 4.2E-08 44.9 6.4 69 199-267 197-280 (282)
171 cd01393 recA_like RecA is a b 97.1 0.0029 7.3E-08 43.2 7.5 82 199-289 22-108 (226)
172 pfam00493 MCM MCM2/3/5 family. 97.1 0.0033 8.5E-08 42.8 7.8 127 199-337 60-218 (327)
173 smart00072 GuKc Guanylate kina 97.1 0.028 7.1E-07 36.2 12.5 111 197-337 3-133 (184)
174 PRK06995 flhF flagellar biosyn 97.1 0.0036 9.2E-08 42.6 7.8 109 200-312 180-308 (404)
175 pfam00931 NB-ARC NB-ARC domain 97.1 0.035 8.8E-07 35.6 17.5 179 198-400 21-221 (285)
176 PRK04328 hypothetical protein; 97.1 0.011 2.9E-07 39.0 10.1 48 197-246 25-72 (250)
177 KOG1968 consensus 97.0 0.0053 1.4E-07 41.3 8.3 160 199-378 360-535 (871)
178 PRK12727 flagellar biosynthesi 97.0 0.0038 9.7E-08 42.4 7.5 114 199-312 351-479 (557)
179 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0032 8.2E-08 42.9 6.8 42 199-240 22-68 (235)
180 pfam07724 AAA_2 AAA domain (Cd 96.9 0.0011 2.7E-08 46.4 4.0 100 199-301 6-126 (168)
181 TIGR03167 tRNA_sel_U_synt tRNA 96.9 0.03 7.7E-07 36.0 11.4 110 196-338 127-242 (311)
182 KOG0736 consensus 96.9 0.0091 2.3E-07 39.7 8.6 155 197-368 706-879 (953)
183 cd00983 recA RecA is a bacter 96.9 0.0077 2E-07 40.2 8.1 82 199-300 58-141 (325)
184 COG0714 MoxR-like ATPases [Gen 96.9 0.015 3.7E-07 38.2 9.5 157 164-337 22-199 (329)
185 KOG0742 consensus 96.9 0.049 1.3E-06 34.5 15.3 134 198-344 386-532 (630)
186 COG0470 HolB ATPase involved i 96.9 0.05 1.3E-06 34.4 17.9 171 197-400 25-220 (325)
187 PRK08769 DNA polymerase III su 96.9 0.014 3.6E-07 38.3 9.3 151 197-368 27-202 (319)
188 KOG2228 consensus 96.9 0.02 5E-07 37.3 10.0 141 197-339 50-218 (408)
189 KOG2004 consensus 96.9 0.013 3.3E-07 38.6 9.0 179 198-382 440-645 (906)
190 PRK00300 gmk guanylate kinase; 96.8 0.025 6.3E-07 36.6 10.3 164 197-404 8-188 (208)
191 KOG0726 consensus 96.8 0.0013 3.2E-08 45.8 3.7 138 199-356 222-378 (440)
192 pfam03215 Rad17 Rad17 cell cyc 96.8 0.049 1.2E-06 34.5 11.7 176 198-383 47-260 (490)
193 TIGR02525 plasmid_TraJ plasmid 96.8 0.00082 2.1E-08 47.1 2.6 71 165-237 104-188 (374)
194 pfam00154 RecA recA bacterial 96.8 0.014 3.5E-07 38.4 8.7 81 199-299 55-137 (322)
195 pfam03266 DUF265 Protein of un 96.8 0.011 2.8E-07 39.1 8.1 122 199-325 2-156 (168)
196 PRK11889 flhF flagellar biosyn 96.8 0.0093 2.4E-07 39.6 7.7 110 199-314 244-376 (436)
197 PTZ00243 ABC transporter; Prov 96.7 0.0059 1.5E-07 41.0 6.5 100 199-301 689-842 (1560)
198 COG1066 Sms Predicted ATP-depe 96.7 0.021 5.3E-07 37.1 9.1 98 199-299 96-218 (456)
199 cd03246 ABCC_Protease_Secretio 96.7 0.0032 8.2E-08 42.9 4.7 105 199-306 31-160 (173)
200 pfam00448 SRP54 SRP54-type pro 96.6 0.0096 2.4E-07 39.5 7.1 104 197-306 2-131 (196)
201 KOG0743 consensus 96.6 0.019 4.9E-07 37.4 8.6 134 181-337 224-380 (457)
202 cd01121 Sms Sms (bacterial rad 96.6 0.011 2.8E-07 39.1 7.3 98 199-298 85-207 (372)
203 KOG0741 consensus 96.6 0.051 1.3E-06 34.4 10.7 179 162-366 499-702 (744)
204 pfam09848 DUF2075 Uncharacteri 96.6 0.0076 1.9E-07 40.3 6.4 98 199-299 4-122 (348)
205 PRK12724 flagellar biosynthesi 96.6 0.028 7.2E-07 36.2 9.2 109 199-312 226-356 (432)
206 pfam08423 Rad51 Rad51. Rad51 i 96.6 0.01 2.6E-07 39.4 6.8 41 200-240 47-92 (261)
207 KOG0739 consensus 96.6 0.047 1.2E-06 34.7 10.2 156 195-366 165-333 (439)
208 PRK13695 putative NTPase; Prov 96.6 0.0078 2E-07 40.2 6.2 116 199-326 6-156 (174)
209 PRK06090 DNA polymerase III su 96.6 0.017 4.3E-07 37.8 7.9 132 197-339 26-179 (319)
210 cd03238 ABC_UvrA The excision 96.5 0.012 3.2E-07 38.7 6.9 110 199-312 24-158 (176)
211 PRK06871 DNA polymerase III su 96.5 0.02 5.2E-07 37.2 7.9 132 197-339 24-177 (324)
212 PRK07993 DNA polymerase III su 96.5 0.022 5.7E-07 36.9 8.2 132 197-339 25-179 (334)
213 PRK05707 DNA polymerase III su 96.5 0.043 1.1E-06 34.9 9.6 125 199-339 25-177 (328)
214 PRK09354 recA recombinase A; P 96.5 0.02 5E-07 37.3 7.8 98 199-316 63-175 (350)
215 cd00984 DnaB_C DnaB helicase C 96.5 0.051 1.3E-06 34.3 9.9 47 199-246 16-66 (242)
216 smart00487 DEXDc DEAD-like hel 96.5 0.033 8.4E-07 35.7 8.9 45 198-242 26-75 (201)
217 COG3910 Predicted ATPase [Gene 96.5 0.035 9E-07 35.5 9.1 128 199-332 40-214 (233)
218 PRK09302 circadian clock prote 96.5 0.079 2E-06 33.0 10.8 98 199-298 269-399 (501)
219 TIGR02237 recomb_radB DNA repa 96.4 0.0049 1.3E-07 41.6 4.4 136 200-338 16-203 (223)
220 pfam05729 NACHT NACHT domain. 96.4 0.09 2.3E-06 32.6 10.7 40 198-237 2-44 (165)
221 PRK13531 regulatory ATPase Rav 96.3 0.014 3.5E-07 38.4 6.3 264 197-472 40-353 (498)
222 PRK13407 bchI magnesium chelat 96.3 0.11 2.9E-06 31.9 17.6 152 168-341 10-217 (334)
223 COG1618 Predicted nucleotide k 96.3 0.056 1.4E-06 34.1 9.4 128 199-338 8-170 (179)
224 COG1435 Tdk Thymidine kinase [ 96.3 0.012 3E-07 38.9 5.8 92 199-298 7-117 (201)
225 cd03247 ABCC_cytochrome_bd The 96.3 0.016 4.1E-07 38.0 6.5 107 198-308 30-163 (178)
226 PRK11823 DNA repair protein Ra 96.3 0.077 2E-06 33.1 9.9 106 199-307 93-230 (454)
227 TIGR03263 guanyl_kin guanylate 96.3 0.022 5.6E-07 37.0 7.1 111 199-334 4-128 (180)
228 COG2607 Predicted ATPase (AAA+ 96.3 0.07 1.8E-06 33.4 9.7 142 197-362 86-256 (287)
229 pfam00270 DEAD DEAD/DEAH box h 96.3 0.062 1.6E-06 33.8 9.3 37 199-235 17-54 (167)
230 KOG0991 consensus 96.2 0.046 1.2E-06 34.7 8.6 186 168-382 29-219 (333)
231 pfam11490 DNA_pol3_alph_N DNA 96.2 0.049 1.2E-06 34.5 8.7 80 31-113 58-137 (180)
232 PRK04296 thymidine kinase; Pro 96.2 0.0058 1.5E-07 41.1 3.9 92 200-298 6-115 (197)
233 COG1419 FlhF Flagellar GTP-bin 96.2 0.024 6.2E-07 36.7 7.0 107 199-309 206-332 (407)
234 PRK05342 clpX ATP-dependent pr 96.2 0.13 3.4E-06 31.4 13.2 209 163-384 69-380 (411)
235 cd01128 rho_factor Transcripti 96.2 0.0075 1.9E-07 40.3 4.3 47 199-245 19-68 (249)
236 PRK12723 flagellar biosynthesi 96.1 0.034 8.8E-07 35.6 7.2 110 199-312 177-309 (388)
237 PRK10536 hypothetical protein; 96.1 0.13 3.4E-06 31.4 10.2 37 198-234 76-112 (262)
238 pfam06068 TIP49 TIP49 C-termin 96.1 0.024 6.2E-07 36.7 6.4 97 260-369 276-383 (395)
239 pfam02562 PhoH PhoH-like prote 96.0 0.099 2.5E-06 32.3 9.4 36 199-234 22-57 (205)
240 PRK07132 DNA polymerase III su 96.0 0.16 4.1E-06 30.9 15.4 251 199-501 23-299 (303)
241 pfam03796 DnaB_C DnaB-like hel 96.0 0.12 3E-06 31.8 9.7 44 199-243 22-65 (186)
242 PRK11784 tRNA 2-selenouridine 96.0 0.085 2.2E-06 32.8 9.0 106 198-338 139-250 (333)
243 PRK13894 conjugal transfer ATP 96.0 0.014 3.7E-07 38.3 5.0 140 160-333 121-261 (320)
244 PRK13546 teichoic acids export 96.0 0.045 1.1E-06 34.8 7.5 101 255-378 157-259 (264)
245 cd03213 ABCG_EPDR ABCG transpo 96.0 0.025 6.4E-07 36.6 6.2 110 199-311 38-181 (194)
246 KOG1970 consensus 96.0 0.079 2E-06 33.0 8.6 210 162-383 71-321 (634)
247 PTZ00293 thymidine kinase; Pro 95.9 0.0041 1E-07 42.2 2.0 90 200-298 8-110 (284)
248 PRK09302 circadian clock prote 95.9 0.1 2.7E-06 32.2 9.2 235 196-436 24-330 (501)
249 cd00046 DEXDc DEAD-like helica 95.9 0.14 3.5E-06 31.3 9.6 37 199-235 3-39 (144)
250 PRK08233 hypothetical protein; 95.9 0.18 4.6E-06 30.4 11.0 35 199-237 6-40 (182)
251 PRK07940 DNA polymerase III su 95.9 0.075 1.9E-06 33.2 8.2 146 198-368 41-210 (395)
252 PRK13833 conjugal transfer pro 95.8 0.019 4.9E-07 37.4 5.0 138 160-331 116-254 (323)
253 pfam01580 FtsK_SpoIIIE FtsK/Sp 95.8 0.17 4.3E-06 30.7 9.8 35 199-233 41-77 (202)
254 cd00267 ABC_ATPase ABC (ATP-bi 95.8 0.015 3.7E-07 38.2 4.3 99 199-302 28-141 (157)
255 TIGR01817 nifA Nif-specific re 95.8 0.051 1.3E-06 34.4 7.1 301 41-390 101-452 (574)
256 PRK04301 radA DNA repair and r 95.8 0.021 5.5E-07 37.0 5.1 92 200-302 107-211 (318)
257 pfam00265 TK Thymidine kinase. 95.7 0.021 5.4E-07 37.1 5.0 91 200-298 5-109 (175)
258 cd00071 GMPK Guanosine monopho 95.7 0.027 6.9E-07 36.3 5.5 115 199-337 2-130 (137)
259 TIGR02773 addB_Gpos ATP-depend 95.7 0.0097 2.5E-07 39.5 3.2 252 200-474 5-318 (1192)
260 KOG0729 consensus 95.7 0.033 8.4E-07 35.7 5.9 167 199-382 214-398 (435)
261 PRK13539 cytochrome c biogenes 95.7 0.065 1.7E-06 33.6 7.3 23 199-221 31-53 (206)
262 cd03236 ABC_RNaseL_inhibitor_d 95.7 0.037 9.5E-07 35.3 6.1 24 199-222 29-52 (255)
263 PRK09519 recA recombinase A; R 95.7 0.13 3.3E-06 31.5 8.8 11 483-493 750-760 (790)
264 cd03231 ABC_CcmA_heme_exporter 95.7 0.01 2.6E-07 39.3 3.2 25 199-223 29-53 (201)
265 COG0468 RecA RecA/RadA recombi 95.6 0.014 3.5E-07 38.5 3.7 76 199-292 63-139 (279)
266 PRK12608 transcription termina 95.6 0.019 4.9E-07 37.4 4.3 33 200-232 136-168 (379)
267 PRK13647 cbiO cobalt transport 95.6 0.13 3.3E-06 31.5 8.5 116 257-401 154-271 (273)
268 pfam07726 AAA_3 ATPase family 95.6 0.0035 8.9E-08 42.7 0.4 84 199-286 2-88 (131)
269 COG2842 Uncharacterized ATPase 95.5 0.25 6.3E-06 29.5 10.3 200 157-385 64-282 (297)
270 cd03235 ABC_Metallic_Cations A 95.5 0.075 1.9E-06 33.2 7.1 23 199-221 28-50 (213)
271 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.5 0.049 1.2E-06 34.5 6.1 23 199-221 51-73 (224)
272 TIGR02902 spore_lonB ATP-depen 95.5 0.033 8.4E-07 35.7 5.2 191 163-397 63-329 (532)
273 cd03250 ABCC_MRP_domain1 Domai 95.5 0.059 1.5E-06 33.9 6.5 38 199-236 34-75 (204)
274 cd03228 ABCC_MRP_Like The MRP 95.5 0.02 5.1E-07 37.2 4.1 103 198-306 30-159 (171)
275 COG0467 RAD55 RecA-superfamily 95.5 0.095 2.4E-06 32.5 7.5 73 197-272 24-96 (260)
276 KOG0732 consensus 95.5 0.2 5E-06 30.2 9.1 165 199-380 302-486 (1080)
277 cd03233 ABC_PDR_domain1 The pl 95.4 0.038 9.7E-07 35.3 5.3 22 199-220 36-57 (202)
278 COG1121 ZnuC ABC-type Mn/Zn tr 95.4 0.092 2.3E-06 32.6 7.2 123 199-325 33-221 (254)
279 PRK13538 cytochrome c biogenes 95.4 0.08 2E-06 33.0 6.8 22 199-220 30-51 (204)
280 cd03369 ABCC_NFT1 Domain 2 of 95.3 0.099 2.5E-06 32.3 7.2 25 199-223 37-61 (207)
281 cd03214 ABC_Iron-Siderophores_ 95.3 0.028 7E-07 36.3 4.3 25 198-222 27-51 (180)
282 cd03216 ABC_Carb_Monos_I This 95.3 0.022 5.7E-07 36.9 3.8 108 199-312 29-152 (163)
283 cd01125 repA Hexameric Replica 95.3 0.042 1.1E-06 35.0 5.2 42 200-241 5-56 (239)
284 cd02028 UMPK_like Uridine mono 95.3 0.02 5.2E-07 37.2 3.6 39 200-240 3-41 (179)
285 cd03232 ABC_PDR_domain2 The pl 95.3 0.074 1.9E-06 33.2 6.4 20 199-218 36-55 (192)
286 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.3 0.056 1.4E-06 34.1 5.8 22 199-220 32-53 (238)
287 KOG0054 consensus 95.2 0.077 2E-06 33.1 6.4 100 199-299 550-701 (1381)
288 TIGR01618 phage_P_loop phage n 95.2 0.065 1.7E-06 33.6 6.0 123 195-338 12-175 (229)
289 CHL00060 atpB ATP synthase CF1 95.2 0.017 4.3E-07 37.8 3.0 39 199-237 158-196 (480)
290 PRK13542 consensus 95.2 0.13 3.4E-06 31.4 7.6 33 199-234 47-79 (224)
291 cd03230 ABC_DR_subfamily_A Thi 95.2 0.024 6.2E-07 36.7 3.7 111 199-312 29-165 (173)
292 COG3598 RepA RecA-family ATPas 95.2 0.036 9.2E-07 35.4 4.6 100 199-299 92-240 (402)
293 COG3284 AcoR Transcriptional a 95.2 0.32 8.1E-06 28.7 19.2 253 167-472 316-595 (606)
294 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.1 0.027 6.8E-07 36.4 3.7 102 198-312 28-137 (144)
295 PHA02244 ATPase-like protein 95.1 0.025 6.3E-07 36.6 3.6 84 197-291 120-207 (383)
296 cd03290 ABCC_SUR1_N The SUR do 95.1 0.083 2.1E-06 32.9 6.2 25 198-222 29-53 (218)
297 PRK10875 recD exonuclease V su 95.1 0.28 7E-06 29.2 8.9 104 199-309 165-303 (607)
298 COG1224 TIP49 DNA helicase TIP 95.1 0.33 8.5E-06 28.6 10.5 126 260-398 292-430 (450)
299 PRK13543 cytochrome c biogenes 95.1 0.17 4.3E-06 30.7 7.7 23 199-221 40-62 (214)
300 cd03254 ABCC_Glucan_exporter_l 95.0 0.046 1.2E-06 34.7 4.8 22 199-220 32-53 (229)
301 TIGR00416 sms DNA repair prote 95.0 0.028 7E-07 36.3 3.6 48 199-248 106-154 (481)
302 cd03115 SRP The signal recogni 95.0 0.26 6.7E-06 29.3 8.6 98 199-298 3-122 (173)
303 KOG2543 consensus 95.0 0.14 3.6E-06 31.2 7.2 161 199-379 33-231 (438)
304 PRK13651 cobalt transporter AT 95.0 0.3 7.7E-06 28.9 8.8 21 199-219 36-56 (304)
305 KOG1942 consensus 95.0 0.34 8.7E-06 28.5 9.1 126 260-398 297-436 (456)
306 PRK09280 F0F1 ATP synthase sub 94.9 0.088 2.2E-06 32.7 6.0 38 199-236 148-185 (466)
307 PRK13767 ATP-dependent helicas 94.9 0.35 8.8E-06 28.5 9.0 43 253-295 166-211 (878)
308 PRK13541 cytochrome c biogenes 94.9 0.088 2.2E-06 32.7 5.9 23 199-221 29-51 (195)
309 PRK06731 flhF flagellar biosyn 94.9 0.13 3.3E-06 31.5 6.7 39 198-238 77-115 (270)
310 PRK10789 putative multidrug tr 94.8 0.082 2.1E-06 32.9 5.6 25 199-223 344-368 (569)
311 pfam08433 KTI12 Chromatin asso 94.8 0.39 9.9E-06 28.1 9.1 101 199-305 2-110 (266)
312 pfam04851 ResIII Type III rest 94.8 0.25 6.3E-06 29.5 8.0 59 198-274 20-79 (103)
313 TIGR02881 spore_V_K stage V sp 94.8 0.39 1E-05 28.1 9.1 154 200-366 46-212 (261)
314 cd03269 ABC_putative_ATPase Th 94.8 0.21 5.2E-06 30.1 7.6 24 199-222 29-52 (210)
315 PRK13644 cbiO cobalt transport 94.8 0.098 2.5E-06 32.4 5.9 21 199-219 31-51 (274)
316 cd03251 ABCC_MsbA MsbA is an e 94.8 0.063 1.6E-06 33.7 4.9 22 199-220 31-52 (234)
317 COG1204 Superfamily II helicas 94.8 0.096 2.4E-06 32.4 5.9 11 69-79 47-57 (766)
318 COG0464 SpoVK ATPases of the A 94.8 0.22 5.7E-06 29.8 7.7 75 291-367 276-355 (494)
319 cd01130 VirB11-like_ATPase Typ 94.8 0.078 2E-06 33.0 5.4 31 199-232 28-58 (186)
320 COG2909 MalT ATP-dependent tra 94.8 0.34 8.6E-06 28.6 8.6 100 197-303 38-173 (894)
321 cd03244 ABCC_MRP_domain2 Domai 94.7 0.17 4.4E-06 30.6 7.0 22 199-220 33-54 (221)
322 PRK07667 uridine kinase; Provi 94.7 0.05 1.3E-06 34.4 4.2 41 199-241 17-57 (190)
323 PRK06674 DNA polymerase III su 94.7 0.36 9.2E-06 28.3 8.6 36 167-209 123-161 (563)
324 TIGR03238 dnd_assoc_3 dnd syst 94.7 0.061 1.5E-06 33.8 4.6 22 198-219 34-55 (504)
325 PRK05917 DNA polymerase III su 94.6 0.43 1.1E-05 27.8 9.6 134 197-368 20-175 (290)
326 cd03222 ABC_RNaseL_inhibitor T 94.6 0.031 8E-07 35.9 3.1 123 199-332 28-162 (177)
327 PRK11231 fecE iron-dicitrate t 94.6 0.11 2.9E-06 31.9 6.0 22 199-220 31-52 (255)
328 PTZ00301 uridine kinase; Provi 94.6 0.04 1E-06 35.1 3.6 121 199-333 6-141 (210)
329 cd01882 BMS1 Bms1. Bms1 is an 94.6 0.1 2.7E-06 32.2 5.8 105 199-318 42-165 (225)
330 cd03227 ABC_Class2 ABC-type Cl 94.6 0.11 2.8E-06 32.0 5.8 108 198-313 23-151 (162)
331 PRK04132 replication factor C 94.6 0.44 1.1E-05 27.8 13.8 108 276-398 658-767 (863)
332 smart00350 MCM minichromosome 94.6 0.44 1.1E-05 27.7 11.8 129 199-338 239-398 (509)
333 PRK09376 rho transcription ter 94.6 0.054 1.4E-06 34.2 4.2 88 200-300 173-264 (416)
334 PRK05818 DNA polymerase III su 94.5 0.47 1.2E-05 27.5 9.9 179 197-399 9-214 (262)
335 cd03226 ABC_cobalt_CbiO_domain 94.4 0.1 2.5E-06 32.3 5.3 24 199-222 29-52 (205)
336 pfam00437 GSPII_E Type II/IV s 94.4 0.14 3.6E-06 31.2 6.1 60 160-230 111-171 (283)
337 KOG1803 consensus 94.4 0.068 1.7E-06 33.5 4.4 45 197-243 202-247 (649)
338 PRK07914 hypothetical protein; 94.4 0.48 1.2E-05 27.5 11.5 179 200-399 9-193 (320)
339 KOG0066 consensus 94.4 0.15 3.9E-06 31.0 6.1 119 201-325 295-422 (807)
340 KOG0243 consensus 94.4 0.064 1.6E-06 33.7 4.2 53 158-215 93-148 (1041)
341 PRK10938 putative molybdenum t 94.3 0.49 1.3E-05 27.4 9.6 20 199-218 289-308 (490)
342 cd01364 KISc_BimC_Eg5 Kinesin 94.3 0.05 1.3E-06 34.4 3.6 54 158-215 46-101 (352)
343 PRK08699 DNA polymerase III su 94.3 0.27 6.8E-06 29.3 7.2 131 197-338 22-183 (325)
344 pfam03969 AFG1_ATPase AFG1-lik 94.3 0.13 3.4E-06 31.4 5.7 85 227-317 258-350 (361)
345 TIGR00763 lon ATP-dependent pr 94.3 0.029 7.5E-07 36.1 2.3 175 199-383 453-662 (941)
346 PRK09544 znuC high-affinity zi 94.3 0.14 3.5E-06 31.3 5.7 23 199-221 33-55 (251)
347 cd01122 GP4d_helicase GP4d_hel 94.3 0.51 1.3E-05 27.2 11.2 41 199-240 33-73 (271)
348 cd03223 ABCD_peroxisomal_ALDP 94.2 0.034 8.6E-07 35.6 2.5 103 198-306 29-152 (166)
349 TIGR02759 TraD_Ftype type IV c 94.2 0.038 9.7E-07 35.3 2.8 48 198-246 210-257 (613)
350 cd01133 F1-ATPase_beta F1 ATP 94.2 0.086 2.2E-06 32.8 4.6 37 199-235 72-108 (274)
351 COG5192 BMS1 GTP-binding prote 94.2 0.52 1.3E-05 27.2 9.2 18 203-220 76-93 (1077)
352 PRK05636 replicative DNA helic 94.2 0.53 1.4E-05 27.2 10.3 100 199-319 270-379 (507)
353 KOG1051 consensus 94.2 0.3 7.7E-06 28.9 7.3 132 165-305 561-715 (898)
354 cd03248 ABCC_TAP TAP, the Tran 94.2 0.18 4.6E-06 30.5 6.1 33 199-234 43-75 (226)
355 PRK08927 fliI flagellum-specif 94.2 0.11 2.7E-06 32.1 4.9 36 199-237 161-196 (441)
356 TIGR03158 cas3_cyano CRISPR-as 94.2 0.54 1.4E-05 27.1 11.5 78 227-305 114-195 (357)
357 PRK06964 DNA polymerase III su 94.1 0.55 1.4E-05 27.0 8.9 131 197-338 22-202 (342)
358 TIGR03574 selen_PSTK L-seryl-t 94.1 0.32 8.2E-06 28.7 7.3 101 199-305 2-109 (249)
359 cd03217 ABC_FeS_Assembly ABC-t 94.1 0.077 2E-06 33.1 4.1 125 199-328 29-190 (200)
360 PRK13642 cbiO cobalt transport 94.1 0.53 1.4E-05 27.1 8.4 206 199-423 36-277 (277)
361 cd03245 ABCC_bacteriocin_expor 94.1 0.13 3.4E-06 31.4 5.3 33 199-234 33-65 (220)
362 PRK13657 cyclic beta-1,2-gluca 94.1 0.15 3.8E-06 31.1 5.5 22 199-220 364-385 (585)
363 PRK13638 cbiO cobalt transport 94.0 0.1 2.6E-06 32.3 4.6 21 199-219 30-50 (271)
364 TIGR00972 3a0107s01c2 phosphat 94.0 0.047 1.2E-06 34.6 2.8 143 200-379 31-191 (248)
365 cd03215 ABC_Carb_Monos_II This 94.0 0.062 1.6E-06 33.8 3.4 23 199-221 29-51 (182)
366 PRK13406 bchD magnesium chelat 94.0 0.58 1.5E-05 26.8 12.1 211 176-401 11-251 (584)
367 PTZ00035 Rad51; Provisional 94.0 0.34 8.5E-06 28.6 7.2 85 200-292 134-225 (350)
368 PRK11174 cysteine/glutathione 94.0 0.14 3.5E-06 31.4 5.2 21 199-219 379-399 (588)
369 PRK07270 DNA polymerase III su 93.9 0.5 1.3E-05 27.3 8.0 28 175-209 133-160 (557)
370 cd03252 ABCC_Hemolysin The ABC 93.9 0.12 3.1E-06 31.7 4.9 22 199-220 31-52 (237)
371 TIGR03600 phage_DnaB phage rep 93.9 0.6 1.5E-05 26.8 9.1 55 199-254 197-255 (421)
372 PRK02362 ski2-like helicase; P 93.9 0.37 9.3E-06 28.3 7.3 56 444-501 580-644 (736)
373 KOG3347 consensus 93.9 0.27 6.8E-06 29.3 6.5 80 199-305 10-92 (176)
374 TIGR00618 sbcc exonuclease Sbc 93.9 0.053 1.4E-06 34.2 2.9 30 197-226 30-61 (1063)
375 COG1341 Predicted GTPase or GT 93.8 0.19 4.8E-06 30.4 5.7 35 199-235 76-110 (398)
376 cd01368 KISc_KIF23_like Kinesi 93.8 0.11 2.8E-06 32.0 4.5 53 159-215 54-108 (345)
377 PRK13540 cytochrome c biogenes 93.8 0.07 1.8E-06 33.4 3.4 23 199-221 30-52 (200)
378 KOG0652 consensus 93.7 0.18 4.5E-06 30.6 5.4 145 199-363 208-372 (424)
379 smart00129 KISc Kinesin motor, 93.7 0.065 1.7E-06 33.6 3.2 52 160-215 46-99 (335)
380 KOG0242 consensus 93.7 0.017 4.3E-07 37.8 0.1 54 159-216 52-107 (675)
381 PRK11331 5-methylcytosine-spec 93.6 0.13 3.2E-06 31.6 4.5 87 199-286 197-299 (459)
382 PRK04040 adenylate kinase; Pro 93.6 0.68 1.7E-05 26.4 9.6 122 198-341 4-130 (189)
383 PRK00448 polC DNA polymerase I 93.6 0.68 1.7E-05 26.4 9.4 78 33-113 92-169 (1436)
384 PRK13826 Dtr system oriT relax 93.5 0.56 1.4E-05 27.0 7.7 102 200-309 401-512 (1102)
385 KOG0952 consensus 93.5 0.41 1E-05 27.9 7.0 107 199-305 129-289 (1230)
386 COG4962 CpaF Flp pilus assembl 93.5 0.12 3E-06 31.8 4.2 117 160-306 145-264 (355)
387 PRK11176 lipid transporter ATP 93.4 0.17 4.3E-06 30.7 4.9 22 199-220 371-392 (581)
388 PHA00729 NTP-binding motif con 93.4 0.3 7.7E-06 28.9 6.2 119 194-328 15-150 (228)
389 cd03224 ABC_TM1139_LivF_branch 93.4 0.37 9.5E-06 28.2 6.6 23 199-221 29-51 (222)
390 cd03289 ABCC_CFTR2 The CFTR su 93.3 0.19 4.9E-06 30.3 5.1 70 253-328 150-221 (275)
391 pfam02456 Adeno_IVa2 Adenoviru 93.3 0.063 1.6E-06 33.7 2.5 39 197-236 86-127 (370)
392 PRK10535 macrolide transporter 93.3 0.18 4.6E-06 30.5 4.9 14 196-209 309-322 (648)
393 PRK10078 ribose 1,5-bisphospho 93.3 0.76 1.9E-05 26.0 10.7 135 197-362 3-145 (184)
394 cd03288 ABCC_SUR2 The SUR doma 93.2 0.24 6.2E-06 29.5 5.5 22 199-220 50-71 (257)
395 COG1131 CcmA ABC-type multidru 93.2 0.41 1E-05 27.9 6.6 68 258-328 153-222 (293)
396 PRK06851 hypothetical protein; 93.2 0.1 2.6E-06 32.3 3.5 26 199-224 34-59 (368)
397 PRK13632 cbiO cobalt transport 93.2 0.3 7.7E-06 28.9 5.9 23 199-221 39-61 (273)
398 cd01367 KISc_KIF2_like Kinesin 93.2 0.087 2.2E-06 32.7 3.1 53 159-215 50-104 (322)
399 PRK10762 D-ribose transporter 93.2 0.57 1.5E-05 26.9 7.3 22 199-220 281-302 (501)
400 COG4240 Predicted kinase [Gene 93.2 0.25 6.4E-06 29.5 5.4 87 197-295 49-137 (300)
401 PRK05595 replicative DNA helic 93.2 0.79 2E-05 25.9 8.2 48 199-247 204-255 (444)
402 cd01375 KISc_KIF9_like Kinesin 93.1 0.091 2.3E-06 32.6 3.1 53 160-216 48-101 (334)
403 KOG0240 consensus 93.0 0.11 2.8E-06 32.0 3.4 57 158-218 47-105 (607)
404 PRK05541 adenylylsulfate kinas 93.0 0.8 2E-05 25.9 7.8 105 199-332 10-115 (176)
405 PRK13700 conjugal transfer pro 93.0 0.14 3.5E-06 31.3 3.9 46 199-245 188-233 (732)
406 PRK01172 ski2-like helicase; P 93.0 0.68 1.7E-05 26.4 7.4 12 36-47 153-164 (674)
407 PRK10790 putative multidrug tr 93.0 0.28 7.2E-06 29.1 5.5 23 198-220 369-391 (593)
408 TIGR02903 spore_lon_C ATP-depe 93.0 0.083 2.1E-06 32.9 2.7 224 151-398 142-429 (616)
409 PRK00254 ski2-like helicase; P 92.9 0.52 1.3E-05 27.2 6.8 57 444-500 570-635 (717)
410 cd03237 ABC_RNaseL_inhibitor_d 92.9 0.24 6.1E-06 29.6 5.0 23 199-221 28-50 (246)
411 cd01369 KISc_KHC_KIF5 Kinesin 92.9 0.12 3.1E-06 31.7 3.6 53 159-215 42-96 (325)
412 cd01371 KISc_KIF3 Kinesin moto 92.9 0.13 3.2E-06 31.6 3.6 53 159-215 47-101 (333)
413 PRK12726 flagellar biosynthesi 92.9 0.75 1.9E-05 26.1 7.5 38 199-238 209-246 (407)
414 PRK05629 hypothetical protein; 92.9 0.86 2.2E-05 25.7 10.0 177 200-398 20-202 (331)
415 pfam06414 Zeta_toxin Zeta toxi 92.8 0.88 2.2E-05 25.6 13.0 152 197-373 11-170 (191)
416 cd03291 ABCC_CFTR1 The CFTR su 92.8 0.4 1E-05 28.0 6.0 22 199-220 66-87 (282)
417 cd01372 KISc_KIF4 Kinesin moto 92.8 0.054 1.4E-06 34.2 1.6 53 159-215 39-93 (341)
418 pfam02283 CobU Cobinamide kina 92.7 0.55 1.4E-05 27.0 6.7 95 200-299 2-121 (166)
419 PRK07261 topology modulation p 92.7 0.34 8.6E-06 28.5 5.6 97 199-341 3-102 (171)
420 pfam00580 UvrD-helicase UvrD/R 92.7 0.3 7.7E-06 28.9 5.3 62 231-299 185-247 (494)
421 KOG0609 consensus 92.7 0.91 2.3E-05 25.5 10.5 114 194-337 338-471 (542)
422 PRK13545 tagH teichoic acids e 92.7 0.23 6E-06 29.7 4.7 66 257-328 159-228 (549)
423 cd01370 KISc_KIP3_like Kinesin 92.7 0.11 2.8E-06 32.0 3.1 53 159-215 53-107 (338)
424 KOG4280 consensus 92.7 0.23 5.8E-06 29.8 4.6 55 158-216 50-106 (574)
425 PRK12678 transcription termina 92.6 0.18 4.6E-06 30.5 4.1 35 199-233 414-448 (667)
426 cd01376 KISc_KID_like Kinesin 92.6 0.059 1.5E-06 33.9 1.6 52 160-215 47-100 (319)
427 COG3604 FhlA Transcriptional r 92.6 0.93 2.4E-05 25.4 12.0 287 161-479 219-543 (550)
428 cd03266 ABC_NatA_sodium_export 92.6 0.28 7.1E-06 29.1 5.0 24 199-222 34-57 (218)
429 cd02023 UMPK Uridine monophosp 92.6 0.11 2.9E-06 31.9 3.0 36 199-238 2-37 (198)
430 COG1120 FepC ABC-type cobalami 92.6 0.25 6.4E-06 29.5 4.8 33 199-234 31-63 (258)
431 TIGR03375 type_I_sec_LssB type 92.6 0.17 4.4E-06 30.6 3.9 22 199-220 494-515 (694)
432 PRK05986 cob(I)yrinic acid a,c 92.6 0.95 2.4E-05 25.4 9.6 112 199-315 25-170 (190)
433 cd03253 ABCC_ATM1_transporter 92.5 0.14 3.5E-06 31.3 3.4 22 198-219 29-50 (236)
434 PRK13639 cbiO cobalt transport 92.5 0.59 1.5E-05 26.8 6.6 21 199-219 31-51 (275)
435 COG1136 SalX ABC-type antimicr 92.5 0.11 2.8E-06 32.0 2.9 50 199-256 34-83 (226)
436 TIGR02768 TraA_Ti Ti-type conj 92.5 0.96 2.4E-05 25.3 8.8 112 177-310 420-546 (888)
437 COG4178 ABC-type uncharacteriz 92.5 0.13 3.3E-06 31.5 3.2 37 197-234 420-463 (604)
438 cd03225 ABC_cobalt_CbiO_domain 92.5 0.4 1E-05 28.0 5.7 23 199-221 30-52 (211)
439 PRK13640 cbiO cobalt transport 92.5 0.52 1.3E-05 27.2 6.3 22 199-220 37-58 (283)
440 KOG2878 consensus 92.5 0.2 5E-06 30.2 4.1 41 198-238 31-74 (282)
441 cd02025 PanK Pantothenate kina 92.5 0.13 3.4E-06 31.4 3.3 38 201-238 4-41 (220)
442 COG0541 Ffh Signal recognition 92.4 0.98 2.5E-05 25.3 8.0 162 197-385 101-343 (451)
443 PRK13873 conjugal transfer ATP 92.4 0.29 7.3E-06 29.0 4.8 67 413-486 712-783 (815)
444 PRK05580 primosome assembly pr 92.4 1 2.5E-05 25.2 9.4 106 195-303 185-330 (699)
445 PRK13650 cbiO cobalt transport 92.3 0.21 5.4E-06 30.0 4.1 22 199-220 33-54 (276)
446 PRK05480 uridine kinase; Provi 92.3 0.16 4E-06 30.9 3.4 39 197-239 5-45 (209)
447 PRK11747 dinG ATP-dependent DN 92.2 0.96 2.4E-05 25.3 7.3 14 70-83 48-61 (697)
448 TIGR03608 L_ocin_972_ABC putat 92.2 0.12 3.2E-06 31.6 2.8 33 199-234 27-59 (206)
449 pfam01583 APS_kinase Adenylyls 92.1 1.1 2.7E-05 25.0 7.7 38 199-238 5-42 (157)
450 KOG0060 consensus 92.1 0.12 3.1E-06 31.7 2.7 21 198-218 463-483 (659)
451 PRK09270 frcK putative fructos 92.1 0.23 5.9E-06 29.7 4.1 40 199-238 37-76 (230)
452 PRK06321 replicative DNA helic 92.0 1.1 2.8E-05 24.9 9.2 106 199-322 229-341 (472)
453 PRK00091 miaA tRNA delta(2)-is 92.0 0.18 4.7E-06 30.4 3.5 120 199-337 7-129 (304)
454 PRK10646 putative ATPase; Prov 91.9 0.37 9.4E-06 28.3 5.0 25 197-221 29-53 (153)
455 TIGR02142 modC_ABC molybdate A 91.9 0.1 2.6E-06 32.2 2.1 33 200-235 27-59 (361)
456 TIGR03305 alt_F1F0_F1_bet alte 91.9 0.22 5.6E-06 29.9 3.8 37 199-235 141-177 (449)
457 cd01373 KISc_KLP2_like Kinesin 91.9 0.085 2.2E-06 32.8 1.7 53 159-215 40-94 (337)
458 pfam00225 Kinesin Kinesin moto 91.8 0.067 1.7E-06 33.5 1.1 52 159-215 39-93 (321)
459 PRK11247 ssuB aliphatic sulfon 91.8 0.3 7.8E-06 28.9 4.5 22 199-220 41-62 (257)
460 PRK08487 DNA polymerase III su 91.8 1.1 2.9E-05 24.8 15.3 245 197-464 17-293 (328)
461 cd00544 CobU Adenosylcobinamid 91.8 0.9 2.3E-05 25.5 6.9 96 199-299 2-124 (169)
462 pfam02367 UPF0079 Uncharacteri 91.8 0.38 9.7E-06 28.2 4.9 25 197-221 16-40 (123)
463 cd02027 APSK Adenosine 5'-phos 91.7 1.2 3E-05 24.7 9.0 102 199-327 2-106 (149)
464 KOG3125 consensus 91.7 0.4 1E-05 28.0 4.9 94 199-298 30-138 (234)
465 PRK07263 consensus 91.7 1.2 3E-05 24.7 9.3 46 199-245 206-255 (453)
466 PRK03846 adenylylsulfate kinas 91.6 1.2 3.1E-05 24.6 8.8 39 198-238 26-64 (198)
467 COG0378 HypB Ni2+-binding GTPa 91.6 0.33 8.5E-06 28.6 4.4 37 199-238 16-52 (202)
468 PRK09536 btuD corrinoid ABC tr 91.6 0.34 8.6E-06 28.6 4.4 83 253-339 150-234 (409)
469 cd01428 ADK Adenylate kinase ( 91.5 1.2 3.1E-05 24.6 10.9 38 199-243 2-39 (194)
470 PRK13830 conjugal transfer pro 91.4 0.38 9.7E-06 28.2 4.6 46 199-245 459-504 (818)
471 PRK07414 cob(I)yrinic acid a,c 91.4 1.3 3.2E-05 24.5 8.5 113 199-315 24-171 (178)
472 PRK05800 cobU adenosylcobinami 91.3 1.3 3.3E-05 24.4 7.6 96 199-299 4-124 (170)
473 PRK06315 type III secretion sy 91.3 0.28 7.2E-06 29.1 3.8 37 199-237 167-203 (442)
474 KOG2170 consensus 91.3 1.3 3.3E-05 24.4 8.6 211 162-401 78-320 (344)
475 pfam06068 TIP49 TIP49 C-termin 91.3 0.45 1.2E-05 27.6 4.8 63 158-227 17-81 (395)
476 COG3451 VirB4 Type IV secretor 91.2 0.41 1E-05 27.9 4.6 47 199-246 439-485 (796)
477 COG3842 PotA ABC-type spermidi 91.2 0.19 4.8E-06 30.3 2.8 21 199-219 34-54 (352)
478 cd00106 KISc Kinesin motor dom 91.2 0.09 2.3E-06 32.6 1.2 53 159-215 44-98 (328)
479 PRK10982 galactose/methyl gala 91.1 0.64 1.6E-05 26.6 5.5 23 198-220 276-298 (491)
480 cd01366 KISc_C_terminal Kinesi 91.1 0.088 2.2E-06 32.7 1.1 52 159-215 44-97 (329)
481 TIGR00345 arsA arsenite-activa 91.1 0.2 5.2E-06 30.1 2.9 36 200-235 1-36 (330)
482 PRK12597 F0F1 ATP synthase sub 91.0 0.39 9.9E-06 28.1 4.3 47 199-245 144-192 (459)
483 PRK07276 DNA polymerase III su 91.0 1.4 3.5E-05 24.2 15.0 184 260-496 105-288 (290)
484 PTZ00265 multidrug resistance 90.9 0.91 2.3E-05 25.5 6.1 47 252-298 593-640 (1467)
485 cd03262 ABC_HisP_GlnQ_permease 90.9 0.19 4.9E-06 30.3 2.7 36 199-237 29-64 (213)
486 PRK13898 type IV secretion sys 90.9 0.46 1.2E-05 27.6 4.6 80 162-245 407-493 (800)
487 PRK08118 topology modulation p 90.8 1.4 3.6E-05 24.1 12.5 99 197-341 2-102 (167)
488 COG1132 MdlB ABC-type multidru 90.8 1.4 3.7E-05 24.1 7.1 22 199-220 358-379 (567)
489 smart00488 DEXDc2 DEAD-like he 90.7 1.5 3.7E-05 24.0 9.2 38 197-234 28-69 (289)
490 smart00489 DEXDc3 DEAD-like he 90.7 1.5 3.7E-05 24.0 9.2 38 197-234 28-69 (289)
491 COG1100 GTPase SAR1 and relate 90.7 0.25 6.3E-06 29.5 3.1 104 199-302 8-122 (219)
492 PRK06696 uridine kinase; Valid 90.7 0.31 7.8E-06 28.9 3.6 43 197-241 25-69 (227)
493 pfam00006 ATP-synt_ab ATP synt 90.7 0.31 7.8E-06 28.8 3.5 25 199-223 18-42 (213)
494 pfam00485 PRK Phosphoribulokin 90.7 0.2 5E-06 30.2 2.5 41 200-240 3-47 (196)
495 pfam02572 CobA_CobO_BtuR ATP:c 90.6 1.5 3.8E-05 24.0 8.3 110 199-315 6-152 (172)
496 KOG1942 consensus 90.5 0.54 1.4E-05 27.1 4.7 76 159-241 32-107 (456)
497 cd00561 CobA_CobO_BtuR ATP:cor 90.5 0.65 1.7E-05 26.5 5.1 110 199-315 5-151 (159)
498 cd03239 ABC_SMC_head The struc 90.5 0.83 2.1E-05 25.8 5.6 24 199-222 25-48 (178)
499 PRK13635 cbiO cobalt transport 90.5 0.56 1.4E-05 27.0 4.7 20 199-218 36-55 (279)
500 PRK06749 replicative DNA helic 90.4 1.5 3.9E-05 23.9 9.9 115 186-322 184-304 (428)
No 1
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=100.00 E-value=0 Score=1049.08 Aligned_cols=445 Identities=41% Similarity=0.664 Sum_probs=407.2
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 89999999999998669788974302405788539989898389899999999899999999998627766507897214
Q gi|254780627|r 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 (502)
Q Consensus 35 ~~~iW~~il~~Lk~~l~~~~F~tWi~pL~~i~~e~~~L~L~vPn~FikdwIe~~Y~~~I~~al~~~~g~~~~I~i~i~~~ 114 (502)
.+++|++|+..|+.++|+..|++||+|+++++++++.++|.|||+|+++||+++|.+.|++++.+..|....++|.+...
T Consensus 1 ~~~iW~~il~~Lk~~l~~~~f~~Wf~pl~~~~~~~~~l~l~vPn~F~~~wI~~~y~~~I~~~l~~~~g~~~~I~~~v~~~ 80 (447)
T PRK00149 1 LKELWQQVLELLKDELSEPEYETWIKPLKLEKSSDDTLVLSAPNRFVKDWIESNYLDLILELLSEVTGAKISVEFVVGEK 80 (447)
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHCEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 97899999999987689999999986596768669999999797589999999999999999999639985289997887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 55555555566554444753322322212355444454344557644788763288614789999999982410013655
Q gi|254780627|r 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 (502)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~s~LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~ 194 (502)
............. ..+.............++|||+|||||||||+||+|||+||++||++||..
T Consensus 81 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~Ln~~yTFdnFVvG~sN~lA~aAA~~Va~~pg~~---- 144 (447)
T PRK00149 81 PSSEEPAAAVTAA------------AAAPAATAATPADNFRSNLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKA---- 144 (447)
T ss_pred CCCCCCCCCCCCC------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCCC----
T ss_conf 6666666655555------------555556566555445678885560326222698599999999998376767----
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf 55548986278888579999999999863068816864698889999999861988999999740310205444453175
Q gi|254780627|r 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 (502)
Q Consensus 195 ~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk 274 (502)
||||||||++|+|||||||||||++++++|+++|+|+|+|+|+++|+.|++++++++||++||+||||||||||||+||
T Consensus 145 -yNPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae~F~~~~v~al~~~~~~~Fr~~yr~~DvLliDDiqfl~gk 223 (447)
T PRK00149 145 -YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSSEKFTNDFVKALRNNAMEEFKEKYRSVDVLLIDDIQFLAGK 223 (447)
T ss_pred -CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECHHHHHHCC
T ss_conf -7855897799887889999999999985899728995499999999999851869999999972885432148886055
Q ss_pred -CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf -0699999999998856987999648756761363034576530211577515888999999999998864311689789
Q gi|254780627|r 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 (502)
Q Consensus 275 -~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~ 353 (502)
+||||||||||+|+++|||||||||++|++|.+|++||+|||+|||+|+|++||+|||++||++|++ ..++.+|
T Consensus 224 ~~tqeeff~~fn~l~~~~kqiv~tsd~~P~~l~~l~~rL~SRf~~Gl~~~i~~Pd~e~r~~Il~~k~~-----~~~~~l~ 298 (447)
T PRK00149 224 EKTQEEFFHTFNALHENNKQIVITSDRPPKELEGLEDRLRSRFEWGLTVDIEPPDLETRVAILQKKAE-----EEGINLP 298 (447)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHH-----HCCCCCC
T ss_conf 77999999999999984996899578896765651177886763762651059999999999999999-----7289999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 8999999850278889999999999998630-246877889999987630378875798999999999809999994088
Q gi|254780627|r 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 (502)
Q Consensus 354 ~~v~~~la~~~~~~vR~Legal~~l~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~i~~~~I~~~V~~~~~i~~~~l~s~ 432 (502)
+|+++|||+++.+|||+|||||++|.|++.+ +..+|+++++++|++++.. ..+.+|++.|+++||+||||+.+||.|+
T Consensus 299 ~~v~~~iA~~~~~nvR~LeGal~~l~a~~~~~~~~i~~~~~~~~l~~~~~~-~~~~it~~~I~~~Va~~f~i~~~dl~s~ 377 (447)
T PRK00149 299 NEVLEFIAKRIRSNIRELEGALNRLVAYASLTGRPITLELAKEALKDLLRL-QKKQITIENIQKVVAEYYNVKVSDLKSK 377 (447)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHCCCHHHHCCC
T ss_conf 899999997126889999999999999999868999999999999987403-6787899999999998809839995378
Q ss_pred CCCHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
Q ss_conf 8774014457999999998515687899988479843799999999999986169999999999987429
Q gi|254780627|r 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 (502)
Q Consensus 433 ~R~~~i~~~RqiamyL~r~~t~~s~~~IG~~fg~rdHsTV~~a~~ki~~~~~~d~~~~~~i~~i~~~i~~ 502 (502)
+|+++||+||||||||||++|++||++||+.|||||||||||||+||++++++|+.++.+|+.|+++|+.
T Consensus 378 ~R~~~i~~aRqiamyL~r~~t~~s~~~IG~~Fg~RdHsTVi~a~~ki~~~~~~d~~~~~~i~~l~~~l~~ 447 (447)
T PRK00149 378 RRTRNIARPRQIAMYLAKELTDLSLPEIGEEFGGRDHTTVLHAVRKIEKLIEEDASLKEEIEELKRKLKS 447 (447)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCC
T ss_conf 8884455899999999998858899999998389983399999999999997499999999999998449
No 2
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=100.00 E-value=0 Score=1011.35 Aligned_cols=437 Identities=24% Similarity=0.406 Sum_probs=392.1
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHCCCEEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 99999999999866978897430240578853998989838989999999989999999999862776650789721455
Q gi|254780627|r 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVAL 116 (502)
Q Consensus 37 ~iW~~il~~Lk~~l~~~~F~tWi~pL~~i~~e~~~L~L~vPn~FikdwIe~~Y~~~I~~al~~~~g~~~~I~i~i~~~~~ 116 (502)
.+|++|+..|+.++|++.|++||+|+++.+++++.|+|.|||+|+++||++||.+.|++++....|..+.+.+.+.....
T Consensus 2 ~~W~~il~~l~~~l~~~~f~~W~~pl~~~~~~~~~l~l~vPn~F~~~wie~~~~~~i~~~l~~~~g~~~~v~~~~~~~~~ 81 (455)
T PRK12422 2 RAWEEFLLLQEKEIGTDTVDKWLRSLKVLCFDACNLYLEAKDSFQVTWFEEHIRHKVKASLINNNGKPIRVHVTSLDKST 81 (455)
T ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHCEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 75999999999768988899888518267851998999809678999999999999999999845984589998788878
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 55555556655444475332232221235544445434455764478876328861478999999998241001365555
Q gi|254780627|r 117 PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 (502)
Q Consensus 117 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~s~LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~ 196 (502)
+... ... ... ..........++|||+|||||||||+||+|||+||++||+.|++.. ...|
T Consensus 82 ~~~~---------~~~-~~~---------~~~~~~~~~~~~lNp~ytFd~FVvG~~N~lA~~aa~~va~~~~~~~-g~~y 141 (455)
T PRK12422 82 PFYK---------EKQ-MQQ---------EKTAYFTMQYGDVDPEMTFANFLVTPENDLPFRILQEFAKVSEQGK-GFPF 141 (455)
T ss_pred CCCC---------CCC-CCC---------CCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCC-CCCC
T ss_conf 7666---------555-444---------4577665565668977835583315860999999999983755358-8767
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC-C
Q ss_conf 548986278888579999999999863068816864698889999999861988999999740310205444453175-0
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk-~ 275 (502)
|||||||++|||||||||||||++.+ |+++|+|+|+|+|+++|+.|++++++++||++||+||||||||||||+|| +
T Consensus 142 NPLfIyG~~GlGKTHLL~AIgn~i~~--~~~kV~Yvtae~F~~~~v~ai~~~~~~~Fr~~yr~~DvLLIDDIQfl~gK~~ 219 (455)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVSALRE--SGGKILYVSSELFTEHLVSAIRSGEMQRFRSFYRNVDALFIEDIEVFSGKGA 219 (455)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHC--CCCEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEHHHHHHCCHH
T ss_conf 87588789999789999999998537--9986999749999999999997588999999996388776314788728488
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 69999999999885698799964875676136303457653021157751588899999999999886431168978989
Q gi|254780627|r 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 (502)
Q Consensus 276 tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~ 355 (502)
||||||||||+|+++|||||+|||++|++|.+|++||+|||+|||+|+|+|||+|||++||++|++ ..++.+|+|
T Consensus 220 tqeEff~tfN~L~~~~KQIVitsDr~P~el~~l~~RL~SRf~~GL~v~I~~Pd~etr~~Il~~k~~-----~~~~~l~~e 294 (455)
T PRK12422 220 TQEEFFHTFNSLHTEGKLIVISSSYAPGDLKAMEERLISRFEWGIAIPIHPLTREGLRSFLMRQAE-----QLSIRIEET 294 (455)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHH-----HCCCCCCHH
T ss_conf 999999999999985996999689895765126899998863761321689998999999999998-----718888446
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHH---HC-CCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHC
Q ss_conf 9999985027888999999999999863---02-4687788999998763037887579899999999980999999408
Q gi|254780627|r 356 VLMHVARTVTTSGRELDGAFNQLVFRHS---FA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 (502)
Q Consensus 356 v~~~la~~~~~~vR~Legal~~l~~~~~---~~-~~~~~~~~~~~l~~~~~~~~~~~i~~~~I~~~V~~~~~i~~~~l~s 431 (502)
+++|||+++.+|||+||||+++|.+... +. ..++.+.++.++++++...+...+|++.|+++||+||||+.+||.|
T Consensus 295 v~~~iA~~i~~niReLeGal~~l~~~~~~~~~~~~~i~~~~~~~~l~d~~~~~~~~~it~~~I~~~Va~~f~i~~~dl~s 374 (455)
T PRK12422 295 ALDFLIQALSSNVKTLLHALTLLAKRVAYKKLSHQLLYEDDIKALLHDVLEAAESVRLTPSGIVRAVAQYYGVSPESILG 374 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHCC
T ss_conf 89999999755179999999999999998715688364999999999874224576589999999999872976999607
Q ss_pred CCCCHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHC
Q ss_conf 8877401445799999999851568789998847984379999999999998616-999999999998742
Q gi|254780627|r 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD-ITLKKEVELLKRLIS 501 (502)
Q Consensus 432 ~~R~~~i~~~RqiamyL~r~~t~~s~~~IG~~fg~rdHsTV~~a~~ki~~~~~~d-~~~~~~i~~i~~~i~ 501 (502)
++|+++||+||||||||||++|++||++||+.| |||||||||||+||++++++| .+++..|+.|.++|.
T Consensus 375 k~R~k~iv~aRqiAMYL~R~lt~~Sl~~IG~~F-gRdHSTVihaikkIe~~l~~dd~~~~~~i~~l~~kl~ 444 (455)
T PRK12422 375 RSQSREYVLPRQVAMYLCRQKLSLSYVKIGDVF-SRDHSTVISSIRAISQKLEEDDRDISMAIQDLTKRLS 444 (455)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH-CCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 888845557999999999988368899998875-9985099999999999997386999999999999987
No 3
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=100.00 E-value=0 Score=891.55 Aligned_cols=406 Identities=47% Similarity=0.760 Sum_probs=378.4
Q ss_pred HHHHHHHHHHHCCHHHHHHHCCCEEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf 99999999986697889743024057885399898983898999999998999999999986277665078972145555
Q gi|254780627|r 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPS 118 (502)
Q Consensus 39 W~~il~~Lk~~l~~~~F~tWi~pL~~i~~e~~~L~L~vPn~FikdwIe~~Y~~~I~~al~~~~g~~~~I~i~i~~~~~~~ 118 (502)
|++|+..|++++++..|++||+|+++ .++.++|.+||.|.++|++++ .+.|.+++.+..| ...++ +.
T Consensus 1 w~~~l~~l~~~~~~~~~~~w~~~~~~---~~~~~~i~~pn~f~~~~~~~~-~~~i~~~~~~~~~-~~~~~--~~------ 67 (408)
T COG0593 1 WERVLARLKKELGETEFESWIRPLKV---EESVLVLYAPNEFVRNWLNSK-LDLIKELLQELDG-IIKVE--VR------ 67 (408)
T ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHC---CCCEEEEEECCHHHHHHHHHH-HHHHHHHHHHHCC-CCCEE--EC------
T ss_conf 95899999986286679999988533---432499996968999999960-8999999998358-75144--24------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf 55555665544447533223222123554444543445576447887632886147899999999824100136555554
Q gi|254780627|r 119 VEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 (502)
Q Consensus 119 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~s~LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NP 198 (502)
...+ . .......|||+|||||||+|++|++|++||++|+++||.. |||
T Consensus 68 -----------~~~~-------~---------q~~~~~~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~~-----~np 115 (408)
T COG0593 68 -----------ASAP-------A---------QLPLPSGLNPKYTFDNFVVGPSNRLAYAAAKAVAENPGGA-----YNP 115 (408)
T ss_pred -----------CCCC-------C---------CCCCCCCCCCCCCHHHEEECCCHHHHHHHHHHHHHCCCCC-----CCC
T ss_conf -----------5553-------1---------3566556898885542204774499999999987566886-----895
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC-CHH
Q ss_conf 8986278888579999999999863068816864698889999999861988999999740310205444453175-069
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk-~tq 277 (502)
|||||++|+|||||||||||++.+..|+++|+|+++|+|+++|+.|++++.+++||++| ++|+||||||||++|| +||
T Consensus 116 lfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk~~~q 194 (408)
T COG0593 116 LFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAGKERTQ 194 (408)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECHHHHHCCCHHHH
T ss_conf 79987999978999999999998629986488504899899999998850488888764-26735551386756771579
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 99999999988569879996487567613630345765302115775158889999999999988643116897898999
Q gi|254780627|r 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 (502)
Q Consensus 278 ee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~ 357 (502)
||||||||+|++.|||||+|||++|++|.++++||+|||+|||+++|+|||+|||++||++| ++.+++.+|+|++
T Consensus 195 eefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kk-----a~~~~~~i~~ev~ 269 (408)
T COG0593 195 EEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKK-----AEDRGIEIPDEVL 269 (408)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCHHHHHHHHCEEEEEECCCCHHHHHHHHHHH-----HHHCCCCCCHHHH
T ss_conf 99999999888508879997078832211035889989863057752798889999999999-----9865888887999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 9998502788899999999999986302-468778899999876303788757989999999998099999940888774
Q gi|254780627|r 358 MHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 (502)
Q Consensus 358 ~~la~~~~~~vR~Legal~~l~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~i~~~~I~~~V~~~~~i~~~~l~s~~R~~ 436 (502)
+|||.++.+|+|+||||+++|.+++.+. +.+|+++++++|+++....+ + +||+.|++.||+||+|+.+||+|++|++
T Consensus 270 ~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~-~-itie~I~~~Va~~y~v~~~dl~s~~R~~ 347 (408)
T COG0593 270 EFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGE-K-ITIEDIQKIVAEYYNVKVSDLLSKSRTR 347 (408)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC-C-CCHHHHHHHHHHHHCCCHHHHHCCCCCC
T ss_conf 9999970030999999999999999853875769999999998640145-5-8999999999988498899962456662
Q ss_pred HHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 01445799999999851568789998847984379999999999998616999999999998
Q gi|254780627|r 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 (502)
Q Consensus 437 ~i~~~RqiamyL~r~~t~~s~~~IG~~fg~rdHsTV~~a~~ki~~~~~~d~~~~~~i~~i~~ 498 (502)
+||+||||||||||++|+.|||+||+.|| ||||||||||+||++++++|.+++.+|+.|++
T Consensus 348 ~i~~~RqiamyL~r~lt~~Slp~IG~~Fg-rdHtTV~~a~~kI~~~~~~d~~l~~~i~~l~~ 408 (408)
T COG0593 348 NIVRPRQIAMYLARELTNLSLPEIGKAFG-RDHTTVLHAVRKIEQLIEEDDSLKEEIELLKR 408 (408)
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_conf 34319999999999871376899999858-98409999999999998658889999999639
No 4
>TIGR00362 DnaA chromosomal replication initiator protein DnaA; InterPro: IPR001957 The bacterial dnaA protein , , plays an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) .; GO: 0003677 DNA binding, 0003688 DNA replication origin binding, 0005524 ATP binding, 0006270 DNA replication initiation, 0006275 regulation of DNA replication.
Probab=100.00 E-value=0 Score=615.25 Aligned_cols=458 Identities=33% Similarity=0.534 Sum_probs=397.2
Q ss_pred CCHHHHHHHHHHHHHH--HCCHHHHHHHCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 7989999999999998--66978897430240578853--9989898389899999999899999999998627766507
Q gi|254780627|r 33 VNCESIFTIVSSRLKN--QVGPDVYASWFQRLKFHSVL--HNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVE 108 (502)
Q Consensus 33 ~d~~~iW~~il~~Lk~--~l~~~~F~tWi~pL~~i~~e--~~~L~L~vPn~FikdwIe~~Y~~~I~~al~~~~g~~~~I~ 108 (502)
.+...+|..|+..++. .++...|.+|++++...... ++.+.+.+||.|.++|++.+|...+.+.+....+......
T Consensus 2 ~~~~~~w~~~l~~~~~~p~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (493)
T TIGR00362 2 ESLSNLWQQALALLKKNPELSKPEFETWLKPLKALSLASKGDTLTLYAPNLFVLDWLEKKYGALLKEILTELTGGPALRL 81 (493)
T ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 52136899999987406553246788888766654201567515885151456767777778889999875126640011
Q ss_pred EEEECCCCCCCCCCCCC----------CCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 89721455555555566----------5544447533223222------1235544445434455764478876328861
Q gi|254780627|r 109 ILVRSVALPSVEKTASS----------PSITKLSPINTNISKS------PIILGKQTISPVFGSPLDSRFVFSTFIEGSS 172 (502)
Q Consensus 109 i~i~~~~~~~~~~~~~~----------~~~~~~~p~~~~~~~~------~~~~~~~~~~~~~~s~LNpryTFDnFVVG~s 172 (502)
+.-.............. +............... ..........+...+.++++||||+||+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (493)
T TIGR00362 82 FLELGVKPVTPKPETKNPALNETFSKAPKLVEGTEPEPALPSPRDRIKLVEKALPEETTPFPKTSLNGKYTFDNFVVGPS 161 (493)
T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEECCC
T ss_conf 10014312356631011134434433123553111145420024566555432000000001111132100000011465
Q ss_pred HHHHHHHHHHHHHCCCC-CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHH
Q ss_conf 47899999999824100-13655555489862788885799999999998630688168646988899999998619889
Q gi|254780627|r 173 NRVALTAAQSIAEVDSH-GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 (502)
Q Consensus 173 N~lA~aAAkaVAe~pg~-~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~ 251 (502)
|++|+++++.++++||+ .| ||+|+||++|+|||||+|++||.....+|+++++|++++.|+++|+.+++.+.+.
T Consensus 162 ~~~~~~~~~~~~~~p~~p~~-----~p~~~~gg~glg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (493)
T TIGR00362 162 NRLAYAASLKVAESPGKPAY-----NPLFLYGGTGLGKTHLLHAIGNGVLELHPNAKVLYVTSENFLNDFVKALRDNKLD 236 (493)
T ss_pred CHHHHHHHHHHHCCCCCCCC-----CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHH
T ss_conf 21567777776405787665-----6247744754215678777643444306773278850146789999875200168
Q ss_pred HHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHH
Q ss_conf 99999740310205444453175-06999999999988569879996487567613630345765302115775158889
Q gi|254780627|r 252 NLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 (502)
Q Consensus 252 ~fr~~~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e 330 (502)
+|+.+||.+|.|++||+||++|| ++|+||||+||.++..++|+|++||++|+++.++++||.|||.||++++|.+||+|
T Consensus 237 ~~~~~~~~~d~~l~dd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~p~~~~~~~~~l~~~~~~g~~~~~~~p~~~ 316 (493)
T TIGR00362 237 DFKKKYRSLDFLLIDDIQFLAGKEKTQEEFFHTFNALHEDGKQIVLTSDRSPKEIPGLEDRLKSRFGWGLTADIEPPDLE 316 (493)
T ss_pred HHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHCHHHHHHHHHHHCCCEEECCCCCHH
T ss_conf 88887631112311104764135203688888888774068527885166620100046777654301410002465235
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHCCCCCC--
Q ss_conf 9999999999886431168978989999998502788899999999999986302-4687788999998763037887--
Q gi|254780627|r 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETK-- 407 (502)
Q Consensus 331 ~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~-- 407 (502)
+|.+|+++|+ +..++.+|++++.|+|.++.+|+|+|||+++++.++..+. ..++++++..++++++......
T Consensus 317 ~~~~~~~~~~-----~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (493)
T TIGR00362 317 TRLAILKKKA-----EEDGINLPEEVLEYIAQHLTSNVRELEGALIRVKAYADLDNADIDLDLVAEVLKDLLPALKEKTN 391 (493)
T ss_pred HHHHHHHHHH-----HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 7899988654-----43035652789999988642246777677887765420012100177789999876544310256
Q ss_pred ----CCCHHHHHHHHHHHHCCCHHHHHCCCCCHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf ----5798999999999809999994088877401445799999999851568789998847984379999999999998
Q gi|254780627|r 408 ----KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 (502)
Q Consensus 408 ----~i~~~~I~~~V~~~~~i~~~~l~s~~R~~~i~~~RqiamyL~r~~t~~s~~~IG~~fg~rdHsTV~~a~~ki~~~~ 483 (502)
.++++.|+..|+++|++..+|+.+++|.++++.||+++|||+|++|+.++++||..||||||+||+|+|+++.+..
T Consensus 392 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~ 471 (493)
T TIGR00362 392 EPNNLVTIENILKVVAEYLKLKVEDLKSKSRKRSVALPRQLALYLARELTDLSLPEIGEAFGGKDHTTVLYACRKIDKLR 471 (493)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 65321028889999888753245666421010023468899999998511342135666515630357888765445665
Q ss_pred HCCHH-----HHHHHHHHHHHH
Q ss_conf 61699-----999999999874
Q gi|254780627|r 484 ETDIT-----LKKEVELLKRLI 500 (502)
Q Consensus 484 ~~d~~-----~~~~i~~i~~~i 500 (502)
+.|.+ +...+..+.+.+
T Consensus 472 ~~~~~p~~~~~~~~~~~~~~~~ 493 (493)
T TIGR00362 472 EEDKEPFVLSLKEDLTNLLNTL 493 (493)
T ss_pred HCCCCCEEEHHHHHHHHHHHCC
T ss_conf 2155750111467899987319
No 5
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=100.00 E-value=0 Score=458.59 Aligned_cols=218 Identities=49% Similarity=0.768 Sum_probs=211.1
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH
Q ss_conf 76447887632886147899999999824100136555554898627888857999999999986306881686469888
Q gi|254780627|r 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 (502)
Q Consensus 158 LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F 237 (502)
|||+|||||||||++|++|+++|++|++.||.. ||||||||++|+||||||||++|++.++.|+.+|+|+++++|
T Consensus 1 l~~~~TFdnF~vg~~N~~a~~~~~~i~~~~~~~-----~npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~ 75 (219)
T pfam00308 1 LNKRYTFENFVIGSSNRFAHAAALAVAEAPGKA-----YNPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEF 75 (219)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-----CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHH
T ss_conf 999987102023683899999999999675876-----782699889999888999999999998499982888439999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHH
Q ss_conf 9999999861988999999740310205444453175-069999999999885698799964875676136303457653
Q gi|254780627|r 238 MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 (502)
Q Consensus 238 ~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~ 316 (502)
+++++.+++++.+.+|+++|+++|+|+|||||+++|+ .+|++|||+||.+.++||+||+||+++|.++..+.++|+|||
T Consensus 76 ~~~~~~~l~~~~~~~f~~~l~~~d~l~iDDi~~l~~~~~~ee~lf~l~N~~~~~~~~lllts~~~p~~l~~~~~dL~SRL 155 (219)
T pfam00308 76 LNDFVDALRDNKIEAFKKSYRNVDLLLIDDIQFLAGKEKTQEEFFHTFNALHENNKQIVLTSDRPPKELEGFEDRLRSRF 155 (219)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCHHHHCCHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHH
T ss_conf 99889999818888999997632336522367656864789999999999997298699977998100245327799998
Q ss_pred HCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 021157751588899999999999886431168978989999998502788899999999999986302
Q gi|254780627|r 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 (502)
Q Consensus 317 ~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~ 385 (502)
.||+++.|++||.++|.+||+++ +.++|+.++++|++||+.++.+|+|+|+|+|++|.|+++++
T Consensus 156 ~~g~~~~i~~pdd~~~~~iL~~~-----a~~r~l~l~~~v~~yl~~r~~R~~r~L~~~L~~L~~~~~~~ 219 (219)
T pfam00308 156 EWGLIIAIEPPDLETRLAILRKK-----AEEENINIPNEVLNFIAQRITDNVRELEGALNRLLAFASFN 219 (219)
T ss_pred HCCEEEECCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 68756611699999999999999-----99849999999999999842798999999999999855079
No 6
>PRK08084 DNA replication initiation factor; Provisional
Probab=100.00 E-value=0 Score=395.36 Aligned_cols=220 Identities=23% Similarity=0.336 Sum_probs=194.6
Q ss_pred CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 45576447887632886147899999999824100136555554898627888857999999999986306881686469
Q gi|254780627|r 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 (502)
Q Consensus 155 ~s~LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~ 234 (502)
.-.|++.+||||||+|++|++|+++...+.+.++ ++|||||++|+||||||||+||++.+. +.++.|+++
T Consensus 12 ~~~l~~~~tfdnFi~g~n~~~~~al~~~~~~~~~--------~~l~l~G~~G~GKTHLLqA~~~~~~~~--~~~~~yl~~ 81 (235)
T PRK08084 12 PLYLPDDETFASFYPGDNDSLLAALQNVLRQEHS--------GYIYLWGREGAGRSHLLHAACAELSQR--GDAVGYVPL 81 (235)
T ss_pred CCCCCCCCCHHCCCCCCCHHHHHHHHHHHHCCCC--------CEEEEECCCCCCHHHHHHHHHHHHHCC--CCCEEEEEH
T ss_conf 8999997663023448869999999999857898--------769998999988899999999999707--985799877
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCC-EEEEECCCCHHHHCCCCHHH
Q ss_conf 8889999999861988999999740310205444453175-069999999999885698-79996487567613630345
Q gi|254780627|r 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK-QVVAAADRPPSELESLDPRI 312 (502)
Q Consensus 235 e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~~gk-qiv~tsd~~P~~l~~l~~rL 312 (502)
+.+.+ + ..++.+.++++|+|+|||||+++|| .+|++|||+||.+.++|| |||+|||++|.++....++|
T Consensus 82 ~~~~~-~--------~~~~l~~l~~~dll~iDDi~~i~g~~~~ee~lF~l~N~~~~~g~~~ll~ts~~~P~~l~~~l~DL 152 (235)
T PRK08084 82 DKRAW-F--------VPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred HHHHH-H--------HHHHHHHHHHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHH
T ss_conf 98665-1--------79999876418989982745546997899999999999998489669996798824302312889
Q ss_pred HHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HCCCCCHH
Q ss_conf 76530211577515888999999999998864311689789899999985027888999999999999863-02468778
Q gi|254780627|r 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAE 391 (502)
Q Consensus 313 ~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~-~~~~~~~~ 391 (502)
+|||+||++++|++||.|+|++||+++ +..+|+.++++|++||+.++.+|+|+|+|++++|-.++. ..+.||++
T Consensus 153 ~SRl~~g~~~~i~~~dde~~~~iL~~~-----a~~rgl~l~~~V~~yl~~~~~R~~~~L~~~l~~Ld~~Sl~~kr~iTip 227 (235)
T PRK08084 153 ASRLDWGQIYKLQPLSDEEKLQALQLR-----ARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDKASITAQRKLTIP 227 (235)
T ss_pred HHHHHCCCEEEECCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 999956972785599989999999999-----997399999899999998615889999999999999999819999999
Q ss_pred HHHHHHH
Q ss_conf 8999998
Q gi|254780627|r 392 IADELLS 398 (502)
Q Consensus 392 ~~~~~l~ 398 (502)
+++++|+
T Consensus 228 ~vkevL~ 234 (235)
T PRK08084 228 FVKEILK 234 (235)
T ss_pred HHHHHHC
T ss_conf 9999965
No 7
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=100.00 E-value=0 Score=387.50 Aligned_cols=219 Identities=24% Similarity=0.320 Sum_probs=200.7
Q ss_pred CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf 55764478876328861478999999998241001365555548986278888579999999999863068816864698
Q gi|254780627|r 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 (502)
Q Consensus 156 s~LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e 235 (502)
-+++++|||||||+|+ |++|++++++++++|+. |||||||++|+||||||||+|+++.+. +.+++|++++
T Consensus 6 ~~l~~~~tfdnFi~~~-N~~~~~~l~~~~~~~~~-------~~l~i~G~~GsGKTHLl~a~~~~~~~~--~~~~~yl~~~ 75 (226)
T TIGR03420 6 VGLPDDPTFDNFYAGG-NAELLAALRQLAAGKGD-------RFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLA 75 (226)
T ss_pred CCCCCCCCHHCCCCCC-HHHHHHHHHHHHHCCCC-------CEEEEECCCCCCHHHHHHHHHHHHHCC--CCCEEEECHH
T ss_conf 9999987631236586-79999999987646688-------869998999998899999999998626--9957995299
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHH
Q ss_conf 889999999861988999999740310205444453175-0699999999998856987999648756761363034576
Q gi|254780627|r 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 (502)
Q Consensus 236 ~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~S 314 (502)
+|.+.+..++ +.++++|+|+|||||++.|+ .+|++|||+||.+.++|++||+||+++|.++....++|+|
T Consensus 76 ~~~~~~~~~l---------~~l~~~d~l~iDDi~~i~~~~~~e~~lF~l~N~~~~~~~~ilits~~~p~~l~~~l~dL~S 146 (226)
T TIGR03420 76 ELAQADPEVL---------EGLEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT 146 (226)
T ss_pred HHHHHHHHHH---------HHCCCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHCCCCHHHHHH
T ss_conf 9877539999---------7274489999966333437837899999999999865282898678882320320177999
Q ss_pred HHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-CCCCCHHHH
Q ss_conf 5302115775158889999999999988643116897898999999850278889999999999998630-246877889
Q gi|254780627|r 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 (502)
Q Consensus 315 R~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~-~~~~~~~~~ 393 (502)
||.||++++|++||.|++.+||+++ +..+++.++++|++||+.++.+|+|+|+|++++|-.++.. .+.||++++
T Consensus 147 Rl~~~~~~~I~~pdd~~~~~iL~k~-----~~~r~i~i~~~vi~yl~~r~~R~~~~l~~~l~~Ld~~sl~~kr~ITi~l~ 221 (226)
T TIGR03420 147 RLAWGLVFQLPPLSDEEKIAALQSR-----AARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFV 221 (226)
T ss_pred HHHCCCEEECCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 9968856852799999999999999-----99859988999999999863798999999999999999980899999999
Q ss_pred HHHHH
Q ss_conf 99998
Q gi|254780627|r 394 DELLS 398 (502)
Q Consensus 394 ~~~l~ 398 (502)
+++|+
T Consensus 222 kevLa 226 (226)
T TIGR03420 222 KEVLA 226 (226)
T ss_pred HHHHC
T ss_conf 99849
No 8
>PRK05642 DNA replication initiation factor; Validated
Probab=100.00 E-value=0 Score=384.96 Aligned_cols=223 Identities=26% Similarity=0.330 Sum_probs=200.2
Q ss_pred CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 45576447887632886147899999999824100136555554898627888857999999999986306881686469
Q gi|254780627|r 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 (502)
Q Consensus 155 ~s~LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~ 234 (502)
.-++++++||||||+| +|..|+++++++++.++. ..+|||||||++|+||||||||+++++... +.+++|++.
T Consensus 9 ~~~l~~~~tfdnFi~g-~N~~a~~~~~~l~~~~~~----~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~--~~~~~yl~~ 81 (234)
T PRK05642 9 GVRLRDDATFANYYPG-ANAAALGYVERLCEADAG----WTESLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPL 81 (234)
T ss_pred CCCCCCCCCHHCCCCC-CCHHHHHHHHHHHHCCCC----CCCCEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEEH
T ss_conf 9999997773035718-759999999998760678----778838998899998899999999999807--996799789
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHH
Q ss_conf 8889999999861988999999740310205444453175-069999999999885698799964875676136303457
Q gi|254780627|r 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 (502)
Q Consensus 235 e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~ 313 (502)
++|.+.. .++.+.++++|+|+|||||+++|| .+|++|||+||.+.++||++|+|||++|.++....++|+
T Consensus 82 ~~~~~~~---------~~~~~~l~~~d~l~IDDi~~i~g~~~~e~~lF~l~N~~~~~~~~llits~~~P~~l~~~l~DL~ 152 (234)
T PRK05642 82 AELLDRG---------PELLDNLEQYELVCIDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPVKLPDLK 152 (234)
T ss_pred HHHHHHH---------HHHHHHHHHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHH
T ss_conf 9987544---------9998624227989893645546885999999999999998399599957879555230016799
Q ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HCCCCCHHH
Q ss_conf 6530211577515888999999999998864311689789899999985027888999999999999863-024687788
Q gi|254780627|r 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEI 392 (502)
Q Consensus 314 SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~-~~~~~~~~~ 392 (502)
|||.||++++|++||.|+|++||+++ +..+|+.++++|++||+.++.+|+|+|+|++++|-.++. ..+.||+++
T Consensus 153 SRl~~~~~~~i~~l~d~~~~~iL~~~-----a~~rgi~l~~~v~~yl~~r~~R~~~~L~~~l~~Ld~~sl~~kr~iTipl 227 (234)
T PRK05642 153 SRLTLALVFQMRGLSDEDKLRALQLR-----ASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPF 227 (234)
T ss_pred HHHHCCCEEEECCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99957812751489989999999999-----7754689998999999997358899999999999999998389999999
Q ss_pred HHHHHH
Q ss_conf 999998
Q gi|254780627|r 393 ADELLS 398 (502)
Q Consensus 393 ~~~~l~ 398 (502)
++++|+
T Consensus 228 vk~vLg 233 (234)
T PRK05642 228 LKETLG 233 (234)
T ss_pred HHHHHC
T ss_conf 999838
No 9
>PRK08903 hypothetical protein; Validated
Probab=100.00 E-value=0 Score=368.08 Aligned_cols=216 Identities=20% Similarity=0.249 Sum_probs=183.1
Q ss_pred CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 45576447887632886147899999999824100136555554898627888857999999999986306881686469
Q gi|254780627|r 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 (502)
Q Consensus 155 ~s~LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~ 234 (502)
.-+++|+|||||||+|++|.++ +++++++..++. .++|||||++|+||||||||++|+..+. +.++.|+++
T Consensus 8 ~~~l~~~~tfdnFv~g~n~~~~-~~l~~~~~~~~~------~~~l~i~G~~G~GKTHLl~a~~~~~~~~--~~~~~yl~~ 78 (227)
T PRK08903 8 DLGPPPPPTFDNFIAGENAELV-TRLRELAAGPVA------DRFFYLWGEAGSGRSHLLQALVAAASEG--GKNARYLDP 78 (227)
T ss_pred CCCCCCCCCHHCCCCCCHHHHH-HHHHHHHHCCCC------CCEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEECC
T ss_conf 9999998764315577759999-999988743887------8669998999998889999999999806--997499651
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-EEEEECCCCHHHHCCCCHHHH
Q ss_conf 8889999999861988999999740310205444453175069999999999885698-799964875676136303457
Q gi|254780627|r 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAK-QVVAAADRPPSELESLDPRIR 313 (502)
Q Consensus 235 e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gk-qiv~tsd~~P~~l~~l~~rL~ 313 (502)
+++...+ +.++.+|+|+|||||++++ ++|++|||+||.+.++|+ +++++++++|..+. +.++|+
T Consensus 79 ~~~~~~~-------------~~~~~~d~l~iDDi~~i~~-~~q~~lF~l~N~~~~~~~~~ll~s~~~~p~~l~-~~~DL~ 143 (227)
T PRK08903 79 ASPLLAF-------------DFDPRAELYAVDDVERLDD-AQQIALFNLFNRVRAHGKTALLVAGPAAPLALD-VREDLR 143 (227)
T ss_pred CCCHHHH-------------HHHHCCCEEEEECCCCCCC-HHHHHHHHHHHHHHHCCCCEEEECCCCCHHHCC-CCHHHH
T ss_conf 1045777-------------4200189899964114895-699999999999997299489971899712012-008999
Q ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HCCCCCHHH
Q ss_conf 6530211577515888999999999998864311689789899999985027888999999999999863-024687788
Q gi|254780627|r 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEI 392 (502)
Q Consensus 314 SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~-~~~~~~~~~ 392 (502)
|||+||++++|++||.|+|.+||+++ +.++|+.++++|++||+.++.+|+|+|+|++++|-.++. .++.||+++
T Consensus 144 SRl~~gl~~~i~~pdde~~~~iL~~~-----a~~rgl~l~~~v~~yl~~r~~R~~~~L~~~l~~Ld~~sl~~kr~iTi~l 218 (227)
T PRK08903 144 TRLGWGLVYEVKPLSDEDKIAALKAA-----AAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRAVTLPL 218 (227)
T ss_pred HHHHCCCEEEEECCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99938973899797999999999999-----9962999988999999998347899999999999999998299999999
Q ss_pred HHHHHHH
Q ss_conf 9999987
Q gi|254780627|r 393 ADELLSH 399 (502)
Q Consensus 393 ~~~~l~~ 399 (502)
++++|+.
T Consensus 219 vkevLa~ 225 (227)
T PRK08903 219 LREMLAA 225 (227)
T ss_pred HHHHHCC
T ss_conf 9998559
No 10
>PRK06893 DNA replication initiation factor; Validated
Probab=100.00 E-value=1.5e-44 Score=336.47 Aligned_cols=217 Identities=20% Similarity=0.278 Sum_probs=188.6
Q ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCE-EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf 576447887632886147899999999824100136555554-8986278888579999999999863068816864698
Q gi|254780627|r 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP-LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 (502)
Q Consensus 157 ~LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NP-Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e 235 (502)
++++..|||||++|++|+++.+..+..++.+ || +||||++|.||||||||++|++.... ...+|++.+
T Consensus 8 ~~~~~~tfdnF~~~~n~~~~~~l~~~~~~~~---------~~~l~i~G~~gsGKTHLLqa~~~~~~~~~--~~~~yi~~~ 76 (229)
T PRK06893 8 HQIDDETLDNFYSDNNLLLLDSLRKNFIDLK---------QPFFYIWGGKSSGKSHLLKAVSNHYLLNQ--RTAIYIPLS 76 (229)
T ss_pred CCCCCCCHHCCCCCCHHHHHHHHHHHCCCCC---------CCEEEEECCCCCCHHHHHHHHHHHHHHHC--CCEEEEEHH
T ss_conf 9998665431546874999999997550246---------98799989999988999999999999718--985999737
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCEEEE-ECCCCHHHHCCCCHHHH
Q ss_conf 889999999861988999999740310205444453175-0699999999998856987999-64875676136303457
Q gi|254780627|r 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVA-AADRPPSELESLDPRIR 313 (502)
Q Consensus 236 ~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~~gkqiv~-tsd~~P~~l~~l~~rL~ 313 (502)
+.. .| ..++-+.++++|+++|||||+++|+ .+|++|||+||.+.++|+++++ ||+++|.++....++|+
T Consensus 77 ~~~-~~--------~~~~l~~l~~~d~l~iDDi~~i~g~~~~e~~lF~l~N~l~~~~~~~ll~ss~~~p~~l~~~l~DL~ 147 (229)
T PRK06893 77 KSQ-YF--------SPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKESGKTLLLISANQSPHALQIKLPDLA 147 (229)
T ss_pred HHH-HC--------CHHHHHHHHHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCHHHHHH
T ss_conf 756-40--------699998765479799967234248838999999999999975991799857988332210026799
Q ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HCCCCCHHH
Q ss_conf 6530211577515888999999999998864311689789899999985027888999999999999863-024687788
Q gi|254780627|r 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEI 392 (502)
Q Consensus 314 SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~-~~~~~~~~~ 392 (502)
|||.||++++|++||.+++.+||+++ +..+|+.++++|++||+.++.+|+|+|+|++++|-.++. ..+.||+++
T Consensus 148 SRl~~~~~~~i~~~dd~~~~~iL~~~-----a~~rgl~l~~~v~~yl~~r~~R~~~~l~~~l~~Ld~~sl~~kr~iTipl 222 (229)
T PRK06893 148 SRLTWGEIYQLNDLTDEQKIEVLQRN-----AYQRGIELSDETANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPF 222 (229)
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99968836996677757999999999-----9964999998999999998347899999999999999998089999999
Q ss_pred HHHHHH
Q ss_conf 999998
Q gi|254780627|r 393 ADELLS 398 (502)
Q Consensus 393 ~~~~l~ 398 (502)
++++|.
T Consensus 223 vkevL~ 228 (229)
T PRK06893 223 VKEILG 228 (229)
T ss_pred HHHHHC
T ss_conf 999868
No 11
>PRK08727 hypothetical protein; Validated
Probab=100.00 E-value=1.1e-42 Score=323.37 Aligned_cols=218 Identities=19% Similarity=0.252 Sum_probs=191.0
Q ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHH
Q ss_conf 57644788763288614789999999982410013655555489862788885799999999998630688168646988
Q gi|254780627|r 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 (502)
Q Consensus 157 ~LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~ 236 (502)
++++.+||||||+|++|.+|..+ +.+. |. ..|||||||++|.||||||||++++.... +.++.|++.+.
T Consensus 11 ~~~~~~tfdnFi~~~n~~~a~l~--~~~~--~~-----~~~~lyl~G~~GsGKTHLl~a~~~~~~~~--~~~~~yl~l~~ 79 (233)
T PRK08727 11 RAPSDQRFDSYIAAPDGLLAQLQ--ALAA--GQ-----SSDWLYLSGPAGTGKTHLALSLCAAAEQA--GRSSAYLPLQA 79 (233)
T ss_pred CCCCCCCHHHCCCCCHHHHHHHH--HHHC--CC-----CCCEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEEHHH
T ss_conf 99972242120678559999999--8743--88-----88989998999998899999999999827--99728844788
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHH
Q ss_conf 899999998619889999997403102054444531750-6999999999988569879996487567613630345765
Q gi|254780627|r 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 (502)
Q Consensus 237 F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR 315 (502)
+.....+++ +-+..+|+++|||||+++|+. .|++|||+||.+.++|+++++||+.+|.++...-+.|.||
T Consensus 80 ~~~~~~~~l---------~~le~~~ll~iDDid~i~g~~~~e~aLFhL~N~~~~~~~~ll~ts~~~P~~l~~~l~DL~SR 150 (233)
T PRK08727 80 AAGRLRDAL---------EALEGRSLVALDGVDSIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSR 150 (233)
T ss_pred HHHHHHHHH---------HHHCCCCEEEEECCHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHH
T ss_conf 532025677---------53103897898550112698279999999999998619838997798956623100219999
Q ss_pred HHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HCCCCCHHHHH
Q ss_conf 30211577515888999999999998864311689789899999985027888999999999999863-02468778899
Q gi|254780627|r 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIAD 394 (502)
Q Consensus 316 ~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~-~~~~~~~~~~~ 394 (502)
|.||+++.|++||.+.+.++|+++ +..+|+.++++|++||+.++..|++.|.+++.+|-..+- ..+.||+++++
T Consensus 151 L~~~~~~~l~~~dD~~~~~iL~~~-----a~~rgl~l~~~V~~Yll~r~~R~~~~l~~~l~~LD~~SL~~kr~iTip~vk 225 (233)
T PRK08727 151 LSQCIRIGLPVLDDVARAAVLRDR-----AQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRITVPFLR 225 (233)
T ss_pred HHCCCEEEECCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 966922885788979999999999-----998699999899999998568899999999999999999808988899999
Q ss_pred HHHHH
Q ss_conf 99987
Q gi|254780627|r 395 ELLSH 399 (502)
Q Consensus 395 ~~l~~ 399 (502)
++|++
T Consensus 226 ~vL~e 230 (233)
T PRK08727 226 RVLEE 230 (233)
T ss_pred HHHHH
T ss_conf 99972
No 12
>PRK06620 hypothetical protein; Validated
Probab=100.00 E-value=1.7e-34 Score=265.08 Aligned_cols=207 Identities=16% Similarity=0.201 Sum_probs=171.4
Q ss_pred CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf 55764478876328861478999999998241001365555548986278888579999999999863068816864698
Q gi|254780627|r 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 (502)
Q Consensus 156 s~LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e 235 (502)
-+.+++|+||+|+||+||++|+++.++..+.+|... ..++|+|||++|.|||||++..++. .++ .+++ +
T Consensus 7 l~~~~~~~~~dF~vs~~N~~A~~~i~~wp~~~~~~~---~~~~l~I~Gp~gSGKTHL~~i~~~~-----~~a--~~~~-~ 75 (214)
T PRK06620 7 FTTSSKYHPDEFIVSSSNDQAYNIIKNWQCMFGVNP---YKFTLLIKGPSSSGKTYLTKIWQNL-----SNA--YIIK-D 75 (214)
T ss_pred CCCCCCCCCCCEEECCCHHHHHHHHHHCHHCCCCCC---CCCEEEEECCCCCCHHHHHHHHHHH-----HCC--EEEC-H
T ss_conf 999777886586876869999999983630256686---5555999879999889999999998-----285--8815-1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHH
Q ss_conf 88999999986198899999974031020544445317506999999999988569879996487567613630345765
Q gi|254780627|r 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 (502)
Q Consensus 236 ~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR 315 (502)
.|.+ . +.+.+.|+++|||++.+. ++.|||+||.+.++|+++++||+.+|.++. |.| |.||
T Consensus 76 ~~~~-----------~---~~~~~~~~~iiddid~~~----e~~lfhlfN~~~~~~~~llits~~~p~~~~-L~D-L~SR 135 (214)
T PRK06620 76 IFFN-----------E---EILEKYNAFIIEDIENWQ----EPALLHIFNIINEKQKYLLLTSSDKSRNFT-LPD-LSSR 135 (214)
T ss_pred HHCC-----------H---HHHHHCCCEEEECCCCCC----HHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCC-HHHH
T ss_conf 2145-----------8---788437937984677574----679999999997159879998279852245-357-8999
Q ss_pred HHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HCCCCCHHHHH
Q ss_conf 30211577515888999999999998864311689789899999985027888999999999999863-02468778899
Q gi|254780627|r 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIAD 394 (502)
Q Consensus 316 ~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~-~~~~~~~~~~~ 394 (502)
|.||++++|++||.|.+.+++.+. +..+++.++++|++||+.++..|++.|.+++.+|-..+- .++.||+++++
T Consensus 136 l~~~~~~~i~~PdD~l~~~ll~k~-----~~~r~i~i~~~vi~yl~~ri~Rs~~~l~~~v~~ld~~sl~~kr~Iti~lik 210 (214)
T PRK06620 136 IKSVLSILLNSPDDELIKILIFKH-----FSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVK 210 (214)
T ss_pred HHCCCEEECCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 854644332698989999999999-----998699887559999999851789999999999999999839998899999
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254780627|r 395 ELLS 398 (502)
Q Consensus 395 ~~l~ 398 (502)
++|.
T Consensus 211 evL~ 214 (214)
T PRK06620 211 EVLN 214 (214)
T ss_pred HHHC
T ss_conf 9839
No 13
>PRK09087 hypothetical protein; Validated
Probab=100.00 E-value=1.4e-33 Score=258.54 Aligned_cols=211 Identities=18% Similarity=0.185 Sum_probs=172.0
Q ss_pred CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf 55764478876328861478999999998241001365555548986278888579999999999863068816864698
Q gi|254780627|r 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 (502)
Q Consensus 156 s~LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e 235 (502)
-++++.|+||||+||++|+.|++...+-.+. ..+.+||||++|.|||||+++.+++. ++ .++++.
T Consensus 12 l~~~~~~~~dnF~vs~~N~~a~~~l~~~~~w--------~~~~~~L~Gp~gsGKTHL~~~~~~~~-----~a--~~~~~~ 76 (226)
T PRK09087 12 FSHQPGYGRDDLVVTESNRAAVSLVDRWPNW--------PSPVVVLAGPVGSGKTHLASIWREKA-----DA--LLVHPN 76 (226)
T ss_pred CCCCCCCCCCCEEECCCHHHHHHHHHHCCCC--------CCCEEEEECCCCCCHHHHHHHHHHHH-----CC--EEECHH
T ss_conf 9998778733647757699999999847267--------77758998999998869999999980-----99--683668
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHH
Q ss_conf 88999999986198899999974031020544445317506999999999988569879996487567613630345765
Q gi|254780627|r 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 (502)
Q Consensus 236 ~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR 315 (502)
.+..+..... ....++|||++-.. .-++.|||+||.+.++|+++++||+.+|.++..--+.|.||
T Consensus 77 ~~~~~~~~~~-------------~~~~~~idd~d~~~--~dEe~LFhl~N~~~~~~~~LLlts~~~p~~l~~~L~DL~SR 141 (226)
T PRK09087 77 EIGSDAANAA-------------AERPVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRLWPSAWNVKLPDLKSR 141 (226)
T ss_pred HCCHHHHHHH-------------CCCCEEEECCCCCC--CCHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHH
T ss_conf 7474667653-------------27988997487777--47899999999998539879998898956667624689999
Q ss_pred HHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HCCCCCHHHHH
Q ss_conf 30211577515888999999999998864311689789899999985027888999999999999863-02468778899
Q gi|254780627|r 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIAD 394 (502)
Q Consensus 316 ~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~-~~~~~~~~~~~ 394 (502)
|.||+++.|.+||.+.+.++|++. +..+|+.++++|++||+.++..++..|..++.+|-..+- ..+.||+.+++
T Consensus 142 L~~~~~~~I~~pdD~ll~~~L~k~-----~~~r~l~l~~~v~~yll~r~~Rs~~~l~~~l~~LD~~SL~~kr~ITiplik 216 (226)
T PRK09087 142 LKAATVVEIGEPDDALLSGVIFKL-----FADRQLYVEPHVVYYLVSRMERSLFAAQTIVERLDRLALERKSRITRALAA 216 (226)
T ss_pred HHCCEEEEECCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 857857983599989999999999-----875765788889999998458899999999999999999818999899999
Q ss_pred HHHHHHH
Q ss_conf 9998763
Q gi|254780627|r 395 ELLSHLV 401 (502)
Q Consensus 395 ~~l~~~~ 401 (502)
++|+++-
T Consensus 217 evL~~l~ 223 (226)
T PRK09087 217 EVLNEMG 223 (226)
T ss_pred HHHHHHC
T ss_conf 9998511
No 14
>PRK08116 hypothetical protein; Validated
Probab=99.93 E-value=2e-24 Score=193.58 Aligned_cols=182 Identities=23% Similarity=0.301 Sum_probs=148.1
Q ss_pred CCCCCHH---HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 5576447---8876328861478999999998241001365555548986278888579999999999863068816864
Q gi|254780627|r 156 SPLDSRF---VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 (502)
Q Consensus 156 s~LNpry---TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~ 232 (502)
+.++++| |||||...+.++-|+.+|+.-|++-.+... ....||+||++|+|||||+.||+|++.++ +..|+|+
T Consensus 67 s~i~~~f~~~tFeN~~~~~~~~~a~~~a~~Y~~~f~~~~~--~~~GLll~G~~GtGKThLa~aIa~~l~~~--g~~V~~~ 142 (262)
T PRK08116 67 SLLDEKFRNSTFENWLFRKGSEKAYKVAVKYVKKFEEMKK--ESVGLLLWGSPGNGKTYLAAAIANELIEK--GVPVVFV 142 (262)
T ss_pred CCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEE
T ss_conf 5999889819222556895259999999999998987364--68618998989998999999999999987--9939998
Q ss_pred EHHHHHHHHHHHHHCCC---HHHHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCC-
Q ss_conf 69888999999986198---8999999740310205444453175-069999999999885698799964875676136-
Q gi|254780627|r 233 TAEYFMWRFASAIRDNC---ALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELES- 307 (502)
Q Consensus 233 ~~e~F~~~~~~a~~~~~---~~~fr~~~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~- 307 (502)
++.+|++++-.+...+. -.++-+.+.++|+|+|||+-.-.+. .+++.||+++|..+.++|.+||||+-+|.+|..
T Consensus 143 ~~~~ll~~lk~~~~~~~~~~~~e~l~~l~~~dLLIiDDlG~e~~t~w~~e~lf~IIn~Ry~~~kptIiTTNl~~~eL~~~ 222 (262)
T PRK08116 143 NVPELLNRIKSTYNSEGKEDENEIIRALDNADLLILDDLGAEKDTEWVREKLYNIIDSRYRKGLPTIFTTNLSLEELKNQ 222 (262)
T ss_pred EHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH
T ss_conf 89999999999986356101999999861299899832214569878999999999999976999899879999999998
Q ss_pred CCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 30345765302115775158889999999999988
Q gi|254780627|r 308 LDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 (502)
Q Consensus 308 l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~ 342 (502)
+++|+.||+. .+...|.-..-+-|..+-+.|.+.
T Consensus 223 ~~~Ri~sRl~-e~~~~v~~~G~d~R~~~a~~k~~~ 256 (262)
T PRK08116 223 YGKRTYSRIL-EMCTPVKNEGKSYRREIAKEKLER 256 (262)
T ss_pred HHHHHHHHHH-HCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 6379999998-677899851778879999999999
No 15
>cd06571 Bac_DnaA_C C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Probab=99.93 E-value=1.5e-25 Score=201.65 Aligned_cols=90 Identities=51% Similarity=0.752 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHCCCCCHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 89999999998099999940888774014457999999998515687899988479843799999999999986169999
Q gi|254780627|r 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 (502)
Q Consensus 411 ~~~I~~~V~~~~~i~~~~l~s~~R~~~i~~~RqiamyL~r~~t~~s~~~IG~~fg~rdHsTV~~a~~ki~~~~~~d~~~~ 490 (502)
+|.|+++||++|||+.+||.|++|.++++.|||+||||||++|++||++||+.|||||||||+||+++|+++++.|++++
T Consensus 1 ~d~I~~~Va~~~~v~~~~i~~~~R~~~~~~aR~ia~yL~r~~~~~s~~~Ig~~fg~rdHsTV~~a~~kv~~~~~~d~~~~ 80 (90)
T cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80 (90)
T ss_pred CHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_conf 98899999999799899984698871378999999999999978899999999589971499999999999998399999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999874
Q gi|254780627|r 491 KEVELLKRLI 500 (502)
Q Consensus 491 ~~i~~i~~~i 500 (502)
..|+.|+++|
T Consensus 81 ~~v~~i~~~l 90 (90)
T cd06571 81 EDVEELEKKL 90 (90)
T ss_pred HHHHHHHHCC
T ss_conf 9999999719
No 16
>pfam08299 Bac_DnaA_C domain.
Probab=99.91 E-value=2.9e-24 Score=192.42 Aligned_cols=70 Identities=63% Similarity=0.931 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHCCCHHHHHCCCCCHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9899999999980999999408887740144579999999985156878999884798437999999999
Q gi|254780627|r 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 (502)
Q Consensus 410 ~~~~I~~~V~~~~~i~~~~l~s~~R~~~i~~~RqiamyL~r~~t~~s~~~IG~~fg~rdHsTV~~a~~ki 479 (502)
|+|.|+++||++|||+.+||.|++|+++|+.|||+||||||++|++||++||+.|||||||||+|||+||
T Consensus 1 tie~I~~~Va~~f~v~~~~i~s~~R~~~i~~aR~iamyL~r~~t~~s~~~IG~~fg~RdHsTVi~aikkI 70 (70)
T pfam08299 1 TIENIQEIVAEYYNITVEDLLSKSRTRSVVRARQIAMYLLRELTNLSLPEIGEIFGGRDHTTVLHAVRKI 70 (70)
T ss_pred CHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHC
T ss_conf 9899999999882996999837898811578999999999998679999999993899737999998609
No 17
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.89 E-value=7.1e-22 Score=175.43 Aligned_cols=171 Identities=20% Similarity=0.272 Sum_probs=143.7
Q ss_pred CCCCCCHHH---HHHHCC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 455764478---876328-8614789999999982410013655555489862788885799999999998630688168
Q gi|254780627|r 155 GSPLDSRFV---FSTFIE-GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 (502)
Q Consensus 155 ~s~LNpryT---FDnFVV-G~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~ 230 (502)
.+.++|+|. ||||.+ .+..+-|+.+|++-|++.+.. +..|+++|++|.|||||..||||++..+ +..|+
T Consensus 56 ~SgI~~~~~~~~Feny~~~~~~q~~al~~a~~y~enf~~~-----~~gLlF~G~~GTGKThLA~aIan~Li~~--G~sVl 128 (242)
T PRK07952 56 RSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGN-----IASFIFSGKPGTGKNHLAAAICNELLLR--GKSVL 128 (242)
T ss_pred HCCCCHHHHCCEEECEECCCHHHHHHHHHHHHHHHHHCCC-----CCEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEE
T ss_conf 5599857728842120158777899999999999865438-----8717997899997899999999999987--99499
Q ss_pred EEEHHHHHHHHHHHHHCCCH--HHHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHC-
Q ss_conf 64698889999999861988--999999740310205444453175-06999999999988569879996487567613-
Q gi|254780627|r 231 YLTAEYFMWRFASAIRDNCA--LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELE- 306 (502)
Q Consensus 231 y~~~e~F~~~~~~a~~~~~~--~~fr~~~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~- 306 (502)
|+|+.++++.+-.+..++.. +++-+.+.+||+|+|||+---.+. ..++.||+++|..+...|.+|+|+.-.+.+|.
T Consensus 129 f~t~~dLl~~lr~t~~~~~~~e~~~l~~l~~~dLLIiDdlG~e~~t~~~~~~lf~iId~Ry~~~kp~IitTNl~~~eL~~ 208 (242)
T PRK07952 129 IITVADIMSAMKDTFRNSETSEEQLLNDLSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTK 208 (242)
T ss_pred EEEHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH
T ss_conf 97799999999999806875699999986318989873014665888899999999999997169889981799999999
Q ss_pred CCCHHHHHHH--HCCEEEEECCCCHHHH
Q ss_conf 6303457653--0211577515888999
Q gi|254780627|r 307 SLDPRIRSRL--QGGVSVPLGLHDYEMR 332 (502)
Q Consensus 307 ~l~~rL~SR~--~~Gl~~~i~~Pd~e~r 332 (502)
-+.+|..||+ .+|.++....|++-.+
T Consensus 209 ~lGeR~~dRl~~~~~~~l~f~w~SyR~~ 236 (242)
T PRK07952 209 LLGERVMDRMRLGNSLWVIFNWDSYRSR 236 (242)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 9708999999727985996067050123
No 18
>PRK06835 DNA replication protein DnaC; Validated
Probab=99.86 E-value=1.7e-20 Score=165.67 Aligned_cols=151 Identities=26% Similarity=0.320 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHC--CCHH
Q ss_conf 78999999998241001365555548986278888579999999999863068816864698889999999861--9889
Q gi|254780627|r 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD--NCAL 251 (502)
Q Consensus 174 ~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~--~~~~ 251 (502)
+-++..|+.-+++-+..+ --||+||++|+|||||.+|||++++++ +..|+|+|+.+|+..+-..-.+ .+..
T Consensus 166 ~~i~~~~~~fi~~F~~~~-----~nLlf~G~~G~GKTfLa~~IA~ell~~--g~sViy~ta~~L~~~l~~~~~~~~~~~~ 238 (330)
T PRK06835 166 ENILEKCLNFIKNFDKNN-----ENLLFYGNTGTGKTFLSNCIAKELLDR--GKTVIYRTSDELIENLREIRFNNDNDAP 238 (330)
T ss_pred HHHHHHHHHHHHHCCCCC-----CCEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEEHHHHHHHHHHHHCCCCCCHH
T ss_conf 999999999987247888-----866988999998899999999999987--9949996299999999997545764489
Q ss_pred HHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCC-CCHHHHHHHHCCEE-EEECCCC
Q ss_conf 99999740310205444453175-069999999999885698799964875676136-30345765302115-7751588
Q gi|254780627|r 252 NLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELES-LDPRIRSRLQGGVS-VPLGLHD 328 (502)
Q Consensus 252 ~fr~~~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~-l~~rL~SR~~~Gl~-~~i~~Pd 328 (502)
+.-+.+.+||+|+|||+..-... .+.++||+++|..+..+|.+|+|++-.+.+|.. +++|..||+.++-. +.+--+|
T Consensus 239 ~~~~~l~~~DLLIIDDLG~E~~t~~~~~~Lf~iIN~R~~~~k~tIITTNl~~~eL~~~y~eRi~SRi~~~~~~~~~~G~D 318 (330)
T PRK06835 239 ELEDLLINCDLLIIDDLGTESITEFSKTELFNLINKRLLMNKKMIISTNLSLEELLKTYSERIASRLLGNFTLLKFYGED 318 (330)
T ss_pred HHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_conf 99999961898997210345588689999999999998679997998899989999987489999998185499852655
Q ss_pred HHHHH
Q ss_conf 89999
Q gi|254780627|r 329 YEMRF 333 (502)
Q Consensus 329 ~e~r~ 333 (502)
.|+
T Consensus 319 --iR~ 321 (330)
T PRK06835 319 --IRI 321 (330)
T ss_pred --HHH
T ss_conf --899
No 19
>PRK06921 hypothetical protein; Provisional
Probab=99.85 E-value=4e-20 Score=162.98 Aligned_cols=167 Identities=19% Similarity=0.244 Sum_probs=128.6
Q ss_pred CHHHHHHHCCCCCHH---HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHH
Q ss_conf 447887632886147---89999999982410013655555489862788885799999999998630688168646988
Q gi|254780627|r 160 SRFVFSTFIEGSSNR---VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 (502)
Q Consensus 160 pryTFDnFVVG~sN~---lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~ 236 (502)
.+.+|+||..-...+ -|+.+|..-|++-.... ....|.|+++|++|+|||||..|||++++++. +..|+|++.-+
T Consensus 78 ~k~nF~nF~~d~~~~~~k~a~~~a~eY~~~F~~i~-~~~~~~l~f~G~~G~GKThLa~aIa~~Ll~~~-~~~Vly~~~~~ 155 (265)
T PRK06921 78 RKLTFKNFKTEGKPQAIKDAYECAVEYVKDFEKIQ-GCRKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPFVE 155 (265)
T ss_pred HHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC-CCEEEEEEHHH
T ss_conf 74776433446776169999999999999778760-77766279972898988999999999999962-97199988799
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHH-HCCC-----CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCH
Q ss_conf 8999999986198899999974031020544445-3175-----069999999999885698799964875676136303
Q gi|254780627|r 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF-LQGK-----LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 (502)
Q Consensus 237 F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqf-l~gk-----~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~ 310 (502)
+++++-... ...++.-+.+++||||+|||+=- ..|+ .+.+.+|.++|+.+.++|.+|+||.-.+.+|..+++
T Consensus 156 ~~~~lk~~~--~~~~~~l~~~~~~dlLIIDDLfk~~~G~e~~te~~~~~lf~iIN~Ry~~~kptIiSSNl~~~~L~~i~e 233 (265)
T PRK06921 156 GFGDLKDDF--DLLEAKLNRMKKVEVLFIDDLFKPVNGKPRATEWQIEQTYSVVNYRYLNHKPILISSELTIDELLDIDE 233 (265)
T ss_pred HHHHHHHHH--HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
T ss_conf 999999888--889999998632999998221223479878988999999999999997699989986899899987637
Q ss_pred HHHHHHH---CCEEEEECCCCHH
Q ss_conf 4576530---2115775158889
Q gi|254780627|r 311 RIRSRLQ---GGVSVPLGLHDYE 330 (502)
Q Consensus 311 rL~SR~~---~Gl~~~i~~Pd~e 330 (502)
|+.||+- .+-+|.|.-.|++
T Consensus 234 ~i~SRi~emc~~~~v~~~G~~~~ 256 (265)
T PRK06921 234 ALGSRIVEMCKDYLVIINGDSFL 256 (265)
T ss_pred HHHHHHHHHCCCCEEEEECCHHH
T ss_conf 98888999725748999674113
No 20
>PRK06030 hypothetical protein; Provisional
Probab=99.81 E-value=2.2e-19 Score=157.76 Aligned_cols=89 Identities=29% Similarity=0.461 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHCCCC-CHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 899999999980999999408887-7401445799999999851568789998847984379999999999998616999
Q gi|254780627|r 411 IEDIQRMVAKHYNISRNDLLSNRR-VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 (502)
Q Consensus 411 ~~~I~~~V~~~~~i~~~~l~s~~R-~~~i~~~RqiamyL~r~~t~~s~~~IG~~fg~rdHsTV~~a~~ki~~~~~~d~~~ 489 (502)
.+-+++.|+.-|||+..+|.|..| ++.++.|||||||||+.++++||++||..| |||||||+|||++||+.. .|+.|
T Consensus 37 c~~v~~l~~~~~gvsg~ei~sp~R~~r~var~RQIAMYLahv~~~~sl~~Ig~~F-gRDrTTv~HAc~~IEd~R-dD~~F 114 (136)
T PRK06030 37 CEALIDLLAASFGVSGAEIASPLRGRQEVSRIRQIAMYVAHTSLGMPMNEVALGF-ARDRTTVGHACHTVEDLR-DDVEF 114 (136)
T ss_pred HHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH-CCCHHHHHHHHHHHHHHC-CCHHH
T ss_conf 9999999999959989987398544304638999999999998678899999997-643159999999999951-28878
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999998742
Q gi|254780627|r 490 KKEVELLKRLIS 501 (502)
Q Consensus 490 ~~~i~~i~~~i~ 501 (502)
...|+.|++-++
T Consensus 115 D~~v~~LEr~~~ 126 (136)
T PRK06030 115 DALVSVLEKIVN 126 (136)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 21
>PRK12377 putative replication protein; Provisional
Probab=99.81 E-value=1.8e-18 Score=151.34 Aligned_cols=169 Identities=21% Similarity=0.319 Sum_probs=143.7
Q ss_pred CCCC---HHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 5764---47887632-8861478999999998241001365555548986278888579999999999863068816864
Q gi|254780627|r 157 PLDS---RFVFSTFI-EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 (502)
Q Consensus 157 ~LNp---ryTFDnFV-VG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~ 232 (502)
.++| +-+||||- ..+-=+.|.+.|+..|++-.... --|.++|++|+|||||..|||+++.++ +.+|+|+
T Consensus 63 ~i~~~h~~~~f~ny~~~~~~~~~a~~~a~~~~~~F~~~~-----~NlIf~G~pGtGKTHLA~AIg~~a~~~--G~sVlF~ 135 (248)
T PRK12377 63 GIQPLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGC-----TNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVV 135 (248)
T ss_pred CCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-----CEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEE
T ss_conf 685376438634564578789999999999999873188-----608998999987889999999999987--9969998
Q ss_pred EHHHHHHHHHHHHHCCCH-HHHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHC-CCC
Q ss_conf 698889999999861988-999999740310205444453175-06999999999988569879996487567613-630
Q gi|254780627|r 233 TAEYFMWRFASAIRDNCA-LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELE-SLD 309 (502)
Q Consensus 233 ~~e~F~~~~~~a~~~~~~-~~fr~~~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~-~l~ 309 (502)
|+.+.++++-.+-.++.. +.+.+.|..+|+|+|||+=..... ..++-||++++..+...|.+|+||.-++.++. -|.
T Consensus 136 t~~dLv~~L~~a~~~g~~~~k~l~~l~~~dLLIIDElG~~~~s~~~~~llfqlI~~Ry~~~ks~IiTTNL~f~ew~~ilg 215 (248)
T PRK12377 136 TVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLG 215 (248)
T ss_pred EHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
T ss_conf 89999999999998485099999997338989860005788986799999999999985579868975899779988875
Q ss_pred HHHHHHH--HCCEEEEECCCCHHHH
Q ss_conf 3457653--0211577515888999
Q gi|254780627|r 310 PRIRSRL--QGGVSVPLGLHDYEMR 332 (502)
Q Consensus 310 ~rL~SR~--~~Gl~~~i~~Pd~e~r 332 (502)
+++.+|+ .+|.++.+.-+.+--+
T Consensus 216 dailDRL~~h~~~~i~f~GeSYRk~ 240 (248)
T PRK12377 216 ERVMDRMTMNGGRWVNFNWESWRPN 240 (248)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 9999999866934998617311135
No 22
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=99.75 E-value=2e-18 Score=150.99 Aligned_cols=60 Identities=47% Similarity=0.749 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHCCCHHHHHCCCCCHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCH
Q ss_conf 989999999998099999940888774014457999999998515687899988479843
Q gi|254780627|r 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 (502)
Q Consensus 410 ~~~~I~~~V~~~~~i~~~~l~s~~R~~~i~~~RqiamyL~r~~t~~s~~~IG~~fg~rdH 469 (502)
|+++|+++||++|+|+++||.|++|++.|+.|||+||||||++|++||++||++||||||
T Consensus 1 ti~~I~~~Va~~~~v~~~~i~s~~R~~~i~~aR~iamyL~r~~~~~s~~~IG~~fg~rdH 60 (60)
T smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDH 60 (60)
T ss_pred CHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
T ss_conf 999999999988399799985679981688899999999999867999999999778998
No 23
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=99.74 E-value=5.5e-17 Score=140.68 Aligned_cols=145 Identities=18% Similarity=0.271 Sum_probs=114.2
Q ss_pred CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf 55764478876328861478999999998241001365555548986278888579999999999863068816864698
Q gi|254780627|r 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 (502)
Q Consensus 156 s~LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e 235 (502)
+.|....|+|+|--...-.+--+.....+. ..|.... --|+++|++|+|||||..|||+++.++ +.+|.|+++.
T Consensus 11 A~~~~~~tle~~d~~~~~~~~~~~i~~L~~---~~~i~~~-~Nlll~G~~GtGKThLA~Ai~~~~~~~--g~~v~f~~~~ 84 (178)
T pfam01695 11 AKLPARKTLEDFDFRAARGLDRRLIAELAG---LDWIEQA-ENLLLLGPPGVGKTHLACALGHQACRA--GYSVLFTRTP 84 (178)
T ss_pred CCCCCCCCHHHCCCCCCCCCCHHHHHHHHC---CCCHHCC-CCEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEECH
T ss_conf 798899986336887899989999998855---9742158-768998999987899999999999986--9859999616
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCC
Q ss_conf 889999999861988999999740310205444453175-069999999999885698799964875676136
Q gi|254780627|r 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 (502)
Q Consensus 236 ~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~ 307 (502)
+|.+++-.+..++..+.+.++|.++|+|+|||+-..... ...+.||+++|..++ .+.+|+||..+|.+...
T Consensus 85 ~L~~~l~~~~~~~~~~~~l~~~~~~dlLIiDDlG~~~~s~~~~~~lf~li~~Rye-~~stIiTSN~~~~~W~~ 156 (178)
T pfam01695 85 DLVEQLKRARGDGRLARTLQRLAKADLLILDDIGYLPLSQEAAHLLFELISDRYE-RRSTILTSNLPFGEWHE 156 (178)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHH
T ss_conf 7999999875267499999996258978872001656898999999999999975-68868776899789987
No 24
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.71 E-value=4.8e-16 Score=134.04 Aligned_cols=141 Identities=23% Similarity=0.281 Sum_probs=115.8
Q ss_pred HHHHHHHCCCC-CHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHH
Q ss_conf 47887632886-14789999999982410013655555489862788885799999999998630688168646988899
Q gi|254780627|r 161 RFVFSTFIEGS-SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 (502)
Q Consensus 161 ryTFDnFVVG~-sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~ 239 (502)
.-+|++|-.-+ +-.-|+.+|...++.-.+. ..-.-|||||+.|+|||||+-||+|++.++ +..|.+++.-+|+.
T Consensus 124 ~as~~d~~~~d~~R~~a~~~a~~F~~~y~~~---~~~kGlyl~G~~G~GKTyL~~aian~La~~--g~~v~~v~~p~~~~ 198 (306)
T PRK08939 124 QATLADIDLDDLDRLDALMAALDFLEAYKPG---EKVKGLYLYGDFGVGKTYLLAAIANELAKK--GVSSTLVHFPEFIR 198 (306)
T ss_pred CCCHHHCCCCCHHHHHHHHHHHHHHHHHCCC---CCCCEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEEHHHHHH
T ss_conf 0989864889778999999999999973769---888778898999998999999999999986--99299987599999
Q ss_pred HHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC-CHHHHH-HHHHHHHHHCCCEEEEECCCCHHHHC
Q ss_conf 99999861988999999740310205444453175-069999-99999988569879996487567613
Q gi|254780627|r 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF-CHLLNSLLDSAKQVVAAADRPPSELE 306 (502)
Q Consensus 240 ~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk-~tqee~-f~~~n~l~~~gkqiv~tsd~~P~~l~ 306 (502)
++-.++.+++.+++-+.++++|+|+||||--=.-. ++.+++ +-++|+.+++++.++|||.-.+.+|.
T Consensus 199 ~lK~s~~d~s~~~~i~~~k~~~vLiLDDiGaE~~t~W~rd~vl~~IL~~Rm~~~lPTffTSN~~~~eLe 267 (306)
T PRK08939 199 ELKNAISDGSVKEKIDAVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELE 267 (306)
T ss_pred HHHHHHCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
T ss_conf 999986489889999998449989984446542677789989999999999749997997799999999
No 25
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=99.70 E-value=4e-16 Score=134.60 Aligned_cols=161 Identities=21% Similarity=0.325 Sum_probs=124.8
Q ss_pred HHHHH---CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHH
Q ss_conf 88763---288614789999999982410013655555489862788885799999999998630688168646988899
Q gi|254780627|r 163 VFSTF---IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 (502)
Q Consensus 163 TFDnF---VVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~ 239 (502)
||++| ......+-|+..+.+.++.-.. .+=|++||++|+|||||+.||||++.+. +.+|.|++.-+|+.
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~------~~nl~l~G~~G~GKthLa~Ai~~~l~~~--g~sv~f~~~~el~~ 146 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALEDLASLVEFFER------GENLVLLGPPGVGKTHLAIAIGNELLKA--GISVLFITAPDLLS 146 (254)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCC------CCCEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEEHHHHHH
T ss_conf 854302358855669999999999987325------8828998999987999999999999983--98499988599999
Q ss_pred HHHHHHHCCCH-HHHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCC-CC-----HH
Q ss_conf 99999861988-999999740310205444453175-069999999999885698799964875676136-30-----34
Q gi|254780627|r 240 RFASAIRDNCA-LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELES-LD-----PR 311 (502)
Q Consensus 240 ~~~~a~~~~~~-~~fr~~~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~-l~-----~r 311 (502)
++-.+...+.. ..+.+.+.++|||+||||=....- ....+||++++..+..... ++||..++.++.. +. +|
T Consensus 147 ~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~-~~tsN~~~~~~~~~~~~~~~~e~ 225 (254)
T COG1484 147 KLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSL-IITSNLSFGEWDELFGDDALTEA 225 (254)
T ss_pred HHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEECCCHHHHHHHCCCCCHHHH
T ss_conf 99998745526899998875289899823677668815587999999999973054-20205882788866067511689
Q ss_pred HHHHHHCCE-EEEECCCCHHHH
Q ss_conf 576530211-577515888999
Q gi|254780627|r 312 IRSRLQGGV-SVPLGLHDYEMR 332 (502)
Q Consensus 312 L~SR~~~Gl-~~~i~~Pd~e~r 332 (502)
+.+|+...- ++.|.-|++..+
T Consensus 226 ~~dRi~~~~~~~~~~g~s~rl~ 247 (254)
T COG1484 226 LLDRILHHSHVIVIKGESYRLN 247 (254)
T ss_pred HHHHHHHCCCCEEECCHHHHHH
T ss_conf 9999986161037615167653
No 26
>PRK08181 transposase; Validated
Probab=99.63 E-value=2.5e-14 Score=121.81 Aligned_cols=136 Identities=21% Similarity=0.339 Sum_probs=114.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC-CH
Q ss_conf 48986278888579999999999863068816864698889999999861988999999740310205444453175-06
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk-~t 276 (502)
.+.++|++|+|||||..|+|+++.++ +.+|.|+++.++++++..|-..+....+-++|..+|+|+|||+=.+.-. ..
T Consensus 108 Nvil~Gp~GtGKThLA~Alg~~A~~~--G~~V~f~~~~~L~~~L~~a~~~~~~~~~~~~l~~~dLLIiDe~G~~~~~~~~ 185 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAE 185 (269)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEHHCCCCCCCHHH
T ss_conf 08998999987889999999999987--9939997899999999997755839999999744460122010566799899
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCHHHHCC------CCHHHHHHH-HCCEEEEECCCCHHHHHHHH
Q ss_conf 9999999999885698799964875676136------303457653-02115775158889999999
Q gi|254780627|r 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELES------LDPRIRSRL-QGGVSVPLGLHDYEMRFSIL 336 (502)
Q Consensus 277 qee~f~~~n~l~~~gkqiv~tsd~~P~~l~~------l~~rL~SR~-~~Gl~~~i~~Pd~e~r~~Il 336 (502)
.+-||++++..++ .+-+|+||..++.+-.. +-+-+..|+ ..+-++.+.-+.+-.|-+.-
T Consensus 186 ~~~lf~lI~~Rye-~~S~IITSn~~~~~W~~~f~D~~la~AiLDRLvH~a~~i~l~GeSyR~k~a~~ 251 (269)
T PRK08181 186 TSVLFELISARYE-RRSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYRRRTALE 251 (269)
T ss_pred HHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHH
T ss_conf 9999999999857-88889988999778877538688999999987015289975587612056787
No 27
>PRK06526 transposase; Provisional
Probab=99.60 E-value=2.6e-14 Score=121.68 Aligned_cols=132 Identities=20% Similarity=0.307 Sum_probs=106.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC-C
Q ss_conf 548986278888579999999999863068816864698889999999861988999999740310205444453175-0
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk-~ 275 (502)
..+.|+|++|+|||||..|+|+++.++ +.+|.|+++.++++++..|-..+....+-.+|..+|+|+|||+=...-. .
T Consensus 99 ~Nvil~G~~GtGKThLA~Alg~~A~~~--G~~v~f~~~~~L~~~L~~a~~~g~~~~~~~~l~~~dLLIiDe~g~~~~~~~ 176 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQA--GHRVLFATAAQWVARLAAAHHAGRLQDELVKLGRIPLLIVDEVGYIPFEAE 176 (254)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECCCCCCCCHH
T ss_conf 878998999986899999999999986--996799877999999999885580999999851368776502136447889
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCC------CCHHHHHHHH-CCEEEEECCCCHHH
Q ss_conf 69999999999885698799964875676136------3034576530-21157751588899
Q gi|254780627|r 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELES------LDPRIRSRLQ-GGVSVPLGLHDYEM 331 (502)
Q Consensus 276 tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~------l~~rL~SR~~-~Gl~~~i~~Pd~e~ 331 (502)
..+-||.+++..++. +-+||||..+|++-.. +-+-+..|+- .+-++.++-+.+=.
T Consensus 177 ~a~~lf~li~~Rye~-~S~IiTSn~~~~~W~~~f~D~~la~AilDRL~H~a~~i~~~G~SyR~ 238 (254)
T PRK06526 177 AANLFFQLVSSRYER-ASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSYRL 238 (254)
T ss_pred HHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 999999999999745-88676658986688886486899999999862562899843886653
No 28
>PRK09183 transposase/IS protein; Provisional
Probab=99.59 E-value=6.1e-14 Score=119.05 Aligned_cols=167 Identities=16% Similarity=0.272 Sum_probs=120.5
Q ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHH
Q ss_conf 44788763288614789999999982410013655555489862788885799999999998630688168646988899
Q gi|254780627|r 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 (502)
Q Consensus 160 pryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~ 239 (502)
...|||+|--...-.+.-+.-...+. ..|-... -.+.++|++|+|||||..|+|+++.++ +.+|.|+++.++++
T Consensus 69 ~~ktle~fDf~~~~~l~~~~i~~La~---~~fi~~~-~Nvil~G~~GtGKThLA~Alg~~A~~~--G~~v~f~~~~~L~~ 142 (258)
T PRK09183 69 AVKTFEEYDFTFATGAPQKQLQSLRS---LSFIERN-ENIVLLGPSGVGKTHLAIALGYEAVRA--GIKVRFTTAADLLL 142 (258)
T ss_pred CCCCHHHCCCCCCCCCCHHHHHHHHC---CCHHHCC-CCEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEEHHHHHH
T ss_conf 98777555654688623899998825---8166558-867998999986899999999999987--99399978999999
Q ss_pred HHHHHHHCCCHHH-HHHHHHHCCHHHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCC-C------CH
Q ss_conf 9999986198899-99997403102054444531750-69999999999885698799964875676136-3------03
Q gi|254780627|r 240 RFASAIRDNCALN-LKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELES-L------DP 310 (502)
Q Consensus 240 ~~~~a~~~~~~~~-fr~~~r~~DvLliDDiqfl~gk~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~-l------~~ 310 (502)
++..|-..+.... +++.+..+|+|+|||+=...-.. ..+.||.+++..++. +.+|+||..++.+-.+ | -+
T Consensus 143 ~L~~a~~~~~~~~~l~r~l~~~dLLIiDdlG~~~~~~~~~~~lfeli~~Rye~-~S~IiTSn~~~~~W~~~f~~D~~la~ 221 (258)
T PRK09183 143 QLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEK-GAMILTSNLPFGQWDQTFAGDAALTS 221 (258)
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHCCCCHHHHH
T ss_conf 99999876859999998743465144313315468888999999999998576-77899889997898565168699999
Q ss_pred HHHHHHH-CCEEEEECCCCHHHHH
Q ss_conf 4576530-2115775158889999
Q gi|254780627|r 311 RIRSRLQ-GGVSVPLGLHDYEMRF 333 (502)
Q Consensus 311 rL~SR~~-~Gl~~~i~~Pd~e~r~ 333 (502)
-+..|+. .+-++.++-+.+=.|-
T Consensus 222 AilDRL~H~a~~i~l~GeSyR~k~ 245 (258)
T PRK09183 222 AMLDRLLHHSHVVQIKGESYRLKQ 245 (258)
T ss_pred HHHHHHCCCEEEEEECCCCCCHHH
T ss_conf 999986046179974587723765
No 29
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.54 E-value=8.5e-12 Score=103.84 Aligned_cols=284 Identities=18% Similarity=0.205 Sum_probs=171.1
Q ss_pred HHHHHCCCCCHHHHH-HHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH
Q ss_conf 887632886147899-9999998241001365555548986278888579999999999863068816864698889999
Q gi|254780627|r 163 VFSTFIEGSSNRVAL-TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 (502)
Q Consensus 163 TFDnFVVG~sN~lA~-aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~ 241 (502)
|||.|| |...-++- ..-..+.++ +.. --+.+|||+|+|||-|.+.|++.. +...+.++|-.-.
T Consensus 11 ~lde~v-GQ~hllg~~~~L~~~i~~-~~~------~s~Il~GPPG~GKTTlA~iiA~~~-----~~~f~~lnA~~~g--- 74 (417)
T PRK13342 11 TLDEVV-GQEHLLGPGKPLRRMIEA-GRL------SSMILWGPPGTGKTTLARIIAGAT-----DAEFEALSAVTSG--- 74 (417)
T ss_pred CHHHHC-CCHHHHCCCHHHHHHHHC-CCC------CEEEEECCCCCCHHHHHHHHHHHH-----CCCEEEEECCCCC---
T ss_conf 888857-987760897199999976-999------759988969998999999999986-----8988996141038---
Q ss_pred HHHHHCCCHHHHHHH-HHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCC-CHHHHCCCCHHHHHHHHCC
Q ss_conf 999861988999999-74031020544445317506999999999988569879996487-5676136303457653021
Q gi|254780627|r 242 ASAIRDNCALNLKDS-LRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR-PPSELESLDPRIRSRLQGG 319 (502)
Q Consensus 242 ~~a~~~~~~~~fr~~-~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~-~P~~l~~l~~rL~SR~~~G 319 (502)
+.-++ .-++..+.. ...--+|.||.||.|. |.-|+-|+-.+. +|.-+++.+-. -|. -.+..-|.||+.
T Consensus 75 v~dir-~ii~~a~~~~~~~~tilfiDEIHRfn-K~QQD~LLp~vE----~g~iiLIgATTENP~--f~in~aLlSRc~-- 144 (417)
T PRK13342 75 VKDLR-EVIEEAKQSRLGRRTILFIDEIHRFN-KAQQDALLPHVE----DGTITLIGATTENPS--FEVNPALLSRAQ-- 144 (417)
T ss_pred HHHHH-HHHHHHHHHHCCCCEEEEEECHHHCC-HHHHHHHHHHHH----CCCEEEEEECCCCCH--HHCCHHHHHHHH--
T ss_conf 89999-99999886314896599997820058-899999987511----265699974157922--534898985657--
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 15775158889999999999988643116897898999999850278889999999999998630246877889999987
Q gi|254780627|r 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSH 399 (502)
Q Consensus 320 l~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~ 399 (502)
+..+++.+.+.-..||++-+........++.++++++++||....|+.|.+-.+|-.+.....-...+|.+.+++.+..
T Consensus 145 -vf~l~~L~~~di~~iL~ral~~e~~~~~~i~i~~~al~~i~~~s~GDaR~aLN~LE~a~~~~~~~~~i~~~~~~~~~~~ 223 (417)
T PRK13342 145 -VFELKPLSEEDLEQLLKRALEDERGLGRKLELDDEALDALARLADGDARRALNLLELAAAAAAGGEVITLELLEEALQR 223 (417)
T ss_pred -HEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf -0020589999999999999987743378877699999999981498599999999999852589973489999999844
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCHHH-CHHHHHH-----HHHHHHHCCCCHHHHHHHHCCCCHHHHH
Q ss_conf 630378875798999999999809999994088877401-4457999-----9999985156878999884798437999
Q gi|254780627|r 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV-VRPRQVA-----MYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 (502)
Q Consensus 400 ~~~~~~~~~i~~~~I~~~V~~~~~i~~~~l~s~~R~~~i-~~~Rqia-----myL~r~~t~~s~~~IG~~fg~rdHsTV~ 473 (502)
-........-.--+++.+- .+.++|..-...+ =.||.+. .|+||.|.-....+||-.-- .--+-+.
T Consensus 224 ~~~~yDk~gd~HYd~iSAf-------~KSiRGSDpdAAlyyLarml~~GEDp~~IaRRLii~AsEDIGlAdP-~al~~a~ 295 (417)
T PRK13342 224 RAARYDKDGDEHYDLISAL-------HKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADP-NALQVAV 295 (417)
T ss_pred CCCCCCCCCCHHHHHHHHH-------HHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCH-HHHHHHH
T ss_conf 1035777863478999999-------9985169954899999999975999799999999988544036787-8999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780627|r 474 HAVRKVEK 481 (502)
Q Consensus 474 ~a~~ki~~ 481 (502)
.+...++.
T Consensus 296 ~a~~a~~~ 303 (417)
T PRK13342 296 AAADAVER 303 (417)
T ss_pred HHHHHHHH
T ss_conf 99999998
No 30
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.48 E-value=1.5e-10 Score=94.91 Aligned_cols=205 Identities=16% Similarity=0.141 Sum_probs=134.0
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHH
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630688168646988899999
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~ 242 (502)
+||.+| |..... ..-++.+++ |... | |.+|||+|.|||-+.+++++++........++.++|-+-- -+
T Consensus 14 ~l~di~-g~~~~~--~~L~~~i~~-~~~p-----h-lLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd~r--~i 81 (318)
T PRK00440 14 SLDEVV-GQEEIV--ERLKSFVKE-KNMP-----H-LLFAGPPGTGKTTAALALARELYGEYWRENFLELNASDER--GI 81 (318)
T ss_pred CHHHHC-CCHHHH--HHHHHHHHC-CCCC-----E-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCC--CH
T ss_conf 899941-969999--999999987-9986-----6-9888959988999999999997698643476895164566--71
Q ss_pred HHHHCCCHHHHHHHHH----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHC
Q ss_conf 9986198899999974----031020544445317506999999999988569879996487567613630345765302
Q gi|254780627|r 243 SAIRDNCALNLKDSLR----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 (502)
Q Consensus 243 ~a~~~~~~~~fr~~~r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~ 318 (502)
+.+++ .+.+|-+..- ..-+++||+++.+. +..|.-|.-+++.. ..+..+|++|..+ . .+-+-++||+
T Consensus 82 d~vr~-~i~~~~~~~~~~~~~~kiiiiDE~d~l~-~~aq~aL~~~mE~~-~~~~~fil~~n~~-~---kii~~i~SRc-- 152 (318)
T PRK00440 82 DVIRN-KIKEFARTAPVGGAPFKIIFLDEADNLT-SDAQQALRRTMEMY-SQTTRFILSCNYS-S---KIIDPIQSRC-- 152 (318)
T ss_pred HHHHH-HHHHHHHHCCCCCCCEEEEEEECCCCCC-HHHHHHHHHHHHCC-CCCCEEEEECCCC-C---CCCCCHHHHH--
T ss_conf 78999-9999997267789973899986855322-55678887643105-6662588634883-3---3761556551--
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 1157751588899999999999886431168978989999998502788899999999999986302468778899999
Q gi|254780627|r 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELL 397 (502)
Q Consensus 319 Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l 397 (502)
......+|..+.-...|+.- ++.+++.+++++++.|+....||+|. |+|-|-+.+..+..+|.+.+.+++
T Consensus 153 -~~i~f~~~~~~~i~~~L~~I-----~~~E~i~~~~~~l~~i~~~s~gdlR~---ain~Lq~~~~~~~~it~~~v~~~~ 222 (318)
T PRK00440 153 -AVFRFSPLPKEAVIERLRYI-----AKNEGLEITDDALEAIYYVSEGDMRK---AINALQAAAATGKEVTEEAVYKIT 222 (318)
T ss_pred -EEEECCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHH---HHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf -01115789999999999999-----99859998999999999864998999---999999999748987899999997
No 31
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.43 E-value=3.8e-10 Score=92.09 Aligned_cols=232 Identities=18% Similarity=0.163 Sum_probs=145.5
Q ss_pred CCCCHHHHHHHCCCCCHHHH-HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf 57644788763288614789-99999998241001365555548986278888579999999999863068816864698
Q gi|254780627|r 157 PLDSRFVFSTFIEGSSNRVA-LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 (502)
Q Consensus 157 ~LNpryTFDnFVVG~sN~lA-~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e 235 (502)
.|.+.|.=|.++ |--.++. .+.+.+=+-. |... +=+||||++|.|||.....+..++.+..++..++|+++.
T Consensus 22 ~L~~~yvP~~l~-~Re~Ei~~l~~~l~~~l~-g~~~-----~n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~ 94 (394)
T PRK00411 22 VLEPDYVPENLP-HREEQIEELAFALRPALR-GSRP-----SNVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQ 94 (394)
T ss_pred HCCCCCCCCCCC-CHHHHHHHHHHHHHHHHC-CCCC-----CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 379988899898-859999999999999975-9999-----847998899998999999999999974689659999696
Q ss_pred HHH------HHHHHHHHCCC-------HHH----HHHHHH---HCCHHHHHHHHHHCCCCHHHHHHHHHHHHH--HCCCE
Q ss_conf 889------99999986198-------899----999974---031020544445317506999999999988--56987
Q gi|254780627|r 236 YFM------WRFASAIRDNC-------ALN----LKDSLR---NIDLLLIDDMQFLQGKLIQHEFCHLLNSLL--DSAKQ 293 (502)
Q Consensus 236 ~F~------~~~~~a~~~~~-------~~~----fr~~~r---~~DvLliDDiqfl~gk~tqee~f~~~n~l~--~~gkq 293 (502)
.+. .++...+.... ..+ +.+... ..=++++|+|..|..+.-++-|+++|..-- ..-+-
T Consensus 95 ~~~t~~~i~~~i~~~L~~~~~p~~G~s~~~~~~~l~~~l~~~~~~~ivvLDEiD~L~~~~~~~vLY~L~r~~~~~~~~~~ 174 (394)
T PRK00411 95 IDRTRYAILSEIARSLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLVEKEGNDVLYSLLRAHEEYPGARI 174 (394)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCE
T ss_conf 68989999999999956998987787899999999998616697589999655402036650899999854022688738
Q ss_pred -EEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC---CCHH
Q ss_conf -999648756761363034576530211577515888999999999998864311689789899999985027---8889
Q gi|254780627|r 294 -VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT---TSGR 369 (502)
Q Consensus 294 -iv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~---~~vR 369 (502)
+|.-|. ...-...|++|+.|||.. -.+...|=+.+--..||+.+++..+ .++ .+++++++++|.... |+.|
T Consensus 175 ~vI~IsN-~~~~~~~Ldprv~S~l~~-~~i~F~PY~~~qL~~IL~~R~~~af--~~g-v~~~~~i~~~A~~~a~~~GDaR 249 (394)
T PRK00411 175 GVIGISS-DLTFLYILDPRVKSVFGP-EEIVFPPYTADEIFDILKDRVEEGF--YPG-VVSDEVLELIADLTGREHGDAR 249 (394)
T ss_pred EEEEEEC-CCCHHHHHHHHHHCCCCC-EEEEECCCCHHHHHHHHHHHHHHCC--CCC-CCCHHHHHHHHHHHHHCCCCHH
T ss_conf 9999976-871776640777502786-2898589998999999999998414--556-7897899999999855047589
Q ss_pred HHHHHHHHHHHHHHH-C-CCCCHHHHHHHHHHH
Q ss_conf 999999999998630-2-468778899999876
Q gi|254780627|r 370 ELDGAFNQLVFRHSF-A-PILTAEIADELLSHL 400 (502)
Q Consensus 370 ~Legal~~l~~~~~~-~-~~~~~~~~~~~l~~~ 400 (502)
.---.|.+-.-.|.- + ..++.+-++.+....
T Consensus 250 ~Aldllr~A~e~Ae~~g~~~Vt~~hV~~A~~~~ 282 (394)
T PRK00411 250 VAIDLLRRAGEIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 999999999999997189965899999999986
No 32
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.43 E-value=1e-10 Score=96.23 Aligned_cols=231 Identities=22% Similarity=0.299 Sum_probs=152.9
Q ss_pred CCCCHHHHHHHCCCCCH-----HHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 57644788763288614-----7899999999824100136555554898627888857999999999986306881686
Q gi|254780627|r 157 PLDSRFVFSTFIEGSSN-----RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 (502)
Q Consensus 157 ~LNpryTFDnFVVG~sN-----~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y 231 (502)
.|-|+ +|+.|| |..+ +.+..||+.= |+. ..-+++|||+|||||-|.+-|+||+-.+ +..
T Consensus 18 ~lRP~-~l~efi-GQ~~i~~~L~v~i~Aak~r----~e~-----ldH~Ll~GPPGlGKTTLA~iiA~E~~~~-----~~~ 81 (328)
T PRK00080 18 SLRPK-SLDEFI-GQEKVKENLKIFIEAAKKR----GEA-----LDHVLLYGPPGLGKTTLANIIANEMGVN-----IRI 81 (328)
T ss_pred CCCCC-CHHHCC-CHHHHHHHHHHHHHHHHHC----CCC-----CCCEEEECCCCCCHHHHHHHHHHHHCCC-----CEE
T ss_conf 55988-576635-9599999999999999964----999-----8805765889988999999999986888-----156
Q ss_pred EEHHHHHHHHHHHH-HCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEC---------CCC
Q ss_conf 46988899999998-61988999999740310205444453175069999999999885698799964---------875
Q gi|254780627|r 232 LTAEYFMWRFASAI-RDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAA---------DRP 301 (502)
Q Consensus 232 ~~~e~F~~~~~~a~-~~~~~~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~ts---------d~~ 301 (502)
+++- ++ +.+++...=.....-|||-||-||.+. +..+|-|+-....+. =-|++-. |-+
T Consensus 82 tsGP--------~lek~~DL~~iLt~l~~~dvLFIDEIHRl~-~~vEE~LY~AMEDf~---iDi~iG~g~~Ar~~~i~L~ 149 (328)
T PRK00080 82 TSGP--------ALEKAGDLAALLTNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFR---LDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred CCCC--------CCCCHHHHHHHHHHCCCCCEEEEHHHHHCC-HHHHHHHHHHHHHCE---EEEEECCCCCCEEEECCCC
T ss_conf 2450--------016747899999608878767650653248-889988579877523---4578647865324555899
Q ss_pred H-------HHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 6-------761363034576530211577515888999999999998864311689789899999985027888999999
Q gi|254780627|r 302 P-------SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 (502)
Q Consensus 302 P-------~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Lega 374 (502)
| ....-|..-|++|| |++..++.=+.|.-.+|+++-+. -.++.++++.+..||.+.++..|--.-.
T Consensus 150 pFTLIGATTr~g~Ls~PLrdRF--Gi~~~l~~Y~~eeL~~Ii~rsa~-----~l~i~i~~~~~~eIA~rSRGTPRiAnrL 222 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRDRF--GIVQRLEFYTVEELEKIVKRSAR-----ILGIEIDEEGALEIARRSRGTPRIANRL 222 (328)
T ss_pred CEEEEECCCCCCCCCHHHHHHC--CCEEEECCCCHHHHHHHHHHHHH-----HHCCCCCHHHHHHHHHHCCCCCHHHHHH
T ss_conf 8347401367665776789757--93366345899999999999999-----8398878999999998638983999999
Q ss_pred HHHHHHHHHHC--CCCCHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHHC
Q ss_conf 99999986302--4687788999998763037887-5798999999999809
Q gi|254780627|r 375 FNQLVFRHSFA--PILTAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYN 423 (502)
Q Consensus 375 l~~l~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~i~~~~I~~~V~~~~~ 423 (502)
|.|+.-++... +.|+.+.++.+|..+ ...+.. .-.-..+.+..++.|+
T Consensus 223 LrRvrDfa~v~~~~~I~~~~~~~aL~~l-~ID~~GLd~~Dr~~L~~l~~~f~ 273 (328)
T PRK00080 223 LRRVRDFAQVKGDGIITREIADKALDML-GVDELGLDEMDRKYLLTIIEKFG 273 (328)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 9999999998379965999999999956-98634899889999999998529
No 33
>PRK04195 replication factor C large subunit; Provisional
Probab=99.35 E-value=1.1e-10 Score=96.08 Aligned_cols=199 Identities=19% Similarity=0.206 Sum_probs=126.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH-----HHHH-HHHHCCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 548986278888579999999999863068816864698889-----9999-9986198899999974031020544445
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM-----WRFA-SAIRDNCALNLKDSLRNIDLLLIDDMQF 270 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~-----~~~~-~a~~~~~~~~fr~~~r~~DvLliDDiqf 270 (502)
.||++|||+|+|||-+.+++++++ +..|+-++|-+.- .+++ .+...+.+... .--++++|.++-
T Consensus 41 k~lLL~GPpGvGKTT~a~~lAk~~-----g~~viElNASD~R~~~~I~~~i~~~~~~~sl~~~-----~~KlIIlDEvD~ 110 (403)
T PRK04195 41 KALLLYGPPGVGKTSLAHALANDY-----GWEVIELNASDQRTKDVIERVAGEASTSGSLFGA-----KRKLILLDEVDG 110 (403)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-----CCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCC-----CCEEEEEECCCC
T ss_conf 469988939987999999999984-----9985997710114789999999987606887788-----734999634344
Q ss_pred HCCCC---HHHHHHHHHHHHHHCCC-EEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 31750---69999999999885698-799964875676136303457653021157751588899999999999886431
Q gi|254780627|r 271 LQGKL---IQHEFCHLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE 346 (502)
Q Consensus 271 l~gk~---tqee~f~~~n~l~~~gk-qiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~ 346 (502)
+.|.. .+.++..++ ...+ .||++|.-+-. . ....|+|| ...+...+|..+.-...|++- +.
T Consensus 111 l~~~~d~gg~~al~~~i----k~s~~PiIli~Nd~~~-~--~~~~lrs~---c~~i~F~~~~~~~I~~~L~~I-----~~ 175 (403)
T PRK04195 111 IHGNADRGGVRAILEII----KKAKNPIILTANDPYD-P--SLRPLRNA---CLMIEFKRLSKRSIVPVLKRI-----CR 175 (403)
T ss_pred CCCHHHHHHHHHHHHHH----HCCCCEEEEEECCCCC-C--CHHHHHHH---HHHCCCCCCCHHHHHHHHHHH-----HH
T ss_conf 57244479999999998----5488708998268455-6--71779976---612217994999999999999-----99
Q ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH-----------HHHHHHHHCCCC---------C
Q ss_conf 16897898999999850278889999999999998630246877889-----------999987630378---------8
Q gi|254780627|r 347 DPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIA-----------DELLSHLVNTGE---------T 406 (502)
Q Consensus 347 ~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~---------~ 406 (502)
.+++.+++++++.||+...|++|. |+|.|-+.+.-++.++.+.+ -+++..++.... .
T Consensus 176 ~Egi~i~~~aL~~Ia~~s~GDlR~---aIN~LQ~~~~~~~~~~~~~~~~~~rd~~~~if~~~~~if~~~~~~~a~~~~~~ 252 (403)
T PRK04195 176 KEGIECEEEALREIAERSGGDLRS---AINDLQAIAEGGGRITLDDVKTGERDREESIFEALDAVFKSRNYDQALEASYD 252 (403)
T ss_pred HCCCCCCHHHHHHHHHHCCCHHHH---HHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 769999999999999987973999---99999999748997756666641352314389999999756989999998852
Q ss_pred CCCCHHHHHHHHHHHHC
Q ss_conf 75798999999999809
Q gi|254780627|r 407 KKMRIEDIQRMVAKHYN 423 (502)
Q Consensus 407 ~~i~~~~I~~~V~~~~~ 423 (502)
-..+++.++.-+.+.+.
T Consensus 253 ~d~dpd~~~~wi~eNip 269 (403)
T PRK04195 253 VDEDPDDLIQWIDENIP 269 (403)
T ss_pred CCCCHHHHHHHHHHCCC
T ss_conf 47998999999996286
No 34
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.32 E-value=2.1e-10 Score=94.01 Aligned_cols=196 Identities=17% Similarity=0.210 Sum_probs=119.6
Q ss_pred CCCHHHHHHHCCCCCHHHHH-HHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHH
Q ss_conf 76447887632886147899-99999982410013655555489862788885799999999998630688168646988
Q gi|254780627|r 158 LDSRFVFSTFIEGSSNRVAL-TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 (502)
Q Consensus 158 LNpryTFDnFVVG~sN~lA~-aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~ 236 (502)
|-|+ |||.|| |...-.+- ..+...+...+..- --+.+|||+|+|||-|.+.|++++.. ....+++..
T Consensus 18 lRP~-~l~e~v-GQehl~~~l~~~i~a~~~~~~~l-----~h~lf~GPPG~GKTTlAriiAk~~~~-----~~~~~s~~~ 85 (234)
T pfam05496 18 LRPR-RLDEYI-GQEKVKENLKIFIEAAKKRGEAL-----DHVLLYGPPGLGKTTLANIIANEMGV-----NIRITSGPA 85 (234)
T ss_pred CCCC-CHHHCC-CHHHHHHHHHHHHHHHHHCCCCC-----CEEEEECCCCCCHHHHHHHHHHHHCC-----CEEEECCHH
T ss_conf 4989-766606-94999999999999887427776-----62788789999888999999984087-----537614266
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCH--------------
Q ss_conf 899999998619889999997403102054444531750699999999998856987999648756--------------
Q gi|254780627|r 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP-------------- 302 (502)
Q Consensus 237 F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P-------------- 302 (502)
. + +.+++...-..+..-|||.||.||.|. |.-|+-|+-... .|.--++.+-.++
T Consensus 86 i-----~--~~~di~~~l~~~~~~~ILFIDEIHr~n-K~qqd~Llp~vE----~g~i~i~ig~~~~A~~~~~e~P~FtLI 153 (234)
T pfam05496 86 L-----E--KPGDLAAILTNLEPGDVLFIDEIHRLN-RAVEEILYPAME----DFRLDIVIGKGPSARSIRLDLPPFTLV 153 (234)
T ss_pred H-----H--HHHHHHHHHHHCCCCCEEEEECHHHCC-HHHHHHCCCCCC----CCEEEEEECCCCCCEEEECCCCCEEEE
T ss_conf 6-----4--389999999845899889996654358-768874455334----616999963676632465268975998
Q ss_pred ---HHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf ---76136303457653021157751588899999999999886431168978989999998502788899999999999
Q gi|254780627|r 303 ---SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 (502)
Q Consensus 303 ---~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~ 379 (502)
.+...|..-|+|||. ++..+++-+.+.-..||++-+ ...++.++++++++||....|+.|.--..|.++.
T Consensus 154 gATTe~~~l~~pl~sR~~--i~~~l~~l~~edl~~il~r~~-----~~l~i~i~~eal~~IA~~s~Gd~R~ALnlLe~v~ 226 (234)
T pfam05496 154 GATTRAGLLTSPLRDRFG--IVLRLEFYSVEELEEIVKRSA-----RILGVEIDEEGAAEIARRSRGTPRIANRLLRRVR 226 (234)
T ss_pred EECCCCCCCCHHHHHHHH--HEEECCCCCHHHHHHHHHHHH-----HHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 521566647777997621--124424689999999999999-----9839995999999999977998999989999999
Q ss_pred HHHHH
Q ss_conf 98630
Q gi|254780627|r 380 FRHSF 384 (502)
Q Consensus 380 ~~~~~ 384 (502)
.+|.-
T Consensus 227 d~a~~ 231 (234)
T pfam05496 227 DFAQV 231 (234)
T ss_pred HHHHH
T ss_conf 99987
No 35
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.31 E-value=6.9e-10 Score=90.28 Aligned_cols=285 Identities=17% Similarity=0.167 Sum_probs=163.9
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHH-HHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHH
Q ss_conf 76447887632886147899999-99982410013655555489862788885799999999998630688168646988
Q gi|254780627|r 158 LDSRFVFSTFIEGSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 (502)
Q Consensus 158 LNpryTFDnFVVG~sN~lA~aAA-kaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~ 236 (502)
+-|+ |+|.|| |...-++-... ..+.++ +.. --+.+|||+|.|||-|.+.|++.... ..+.++|-.
T Consensus 22 mRP~-~Lde~v-GQ~hllg~g~~Lrr~i~~-~~~------~S~Il~GPPGtGKTTLA~iIA~~t~~-----~F~~lsAv~ 87 (726)
T PRK13341 22 LRPR-TLEEFV-GQDHILGEGRLLRRAIKA-DRV------GSLILYGPPGVGKTTLARIIANHTRA-----HFSSLNAVL 87 (726)
T ss_pred HCCC-CHHHHC-CCHHHCCCCCHHHHHHHC-CCC------CEEEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCC
T ss_conf 2999-877735-957542898289999976-999------82788897999999999999887488-----679985620
Q ss_pred H-HHHHHHHHHCCCHHHHH---HHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHCCCCHH
Q ss_conf 8-99999998619889999---997403102054444531750699999999998856987999648-756761363034
Q gi|254780627|r 237 F-MWRFASAIRDNCALNLK---DSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD-RPPSELESLDPR 311 (502)
Q Consensus 237 F-~~~~~~a~~~~~~~~fr---~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd-~~P~~l~~l~~r 311 (502)
- +.++-.. +++-+ ..|-.--+|.||.||.| +|.-|+-|+.. .++|.-++|.+- --|. -.+..-
T Consensus 88 sgvkdlr~i-----i~~A~~~~~~~g~~tILFIDEIHRf-NK~QQD~LLp~----vE~G~i~LIGATTENP~--F~vn~A 155 (726)
T PRK13341 88 AGVKDLRAE-----VDAAKERLERHGKRTILFIDEVHRF-NKAQQDALLPW----VENGTVTLIGATTENPY--FEVNKA 155 (726)
T ss_pred CCHHHHHHH-----HHHHHHHHHHCCCCEEEEEECHHHC-CHHHHHHHHHH----HCCCEEEEEEECCCCCC--EEECHH
T ss_conf 377999999-----9999999874599659998625425-88789987888----60683899970478974--364298
Q ss_pred HHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHH--HHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--CC-
Q ss_conf 576530211577515888999999999998864--3116897898999999850278889999999999998630--24-
Q gi|254780627|r 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ--KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--AP- 386 (502)
Q Consensus 312 L~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~--~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~--~~- 386 (502)
|.||. .+..+++.+.+.-..||++-+.... ....++.++++++++|+....|+.|.+-.+|--......- .+
T Consensus 156 LlSR~---~vf~L~~L~~~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s~GDaR~aLN~LElav~~~~~~~~~~ 232 (726)
T PRK13341 156 LVSRS---RLFRLKSLEDEDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGV 232 (726)
T ss_pred HHHHC---EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 88323---466743899999999999998767432566787759899999999759739999999999997074576883
Q ss_pred -CCCHHHHHHHHHH-HHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCHH-HCHHHHHH-----HHHHHHHCCCCHH
Q ss_conf -6877889999987-63037887579899999999980999999408887740-14457999-----9999985156878
Q gi|254780627|r 387 -ILTAEIADELLSH-LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT-VVRPRQVA-----MYLSKIMTPRSFP 458 (502)
Q Consensus 387 -~~~~~~~~~~l~~-~~~~~~~~~i~~~~I~~~V~~~~~i~~~~l~s~~R~~~-i~~~Rqia-----myL~r~~t~~s~~ 458 (502)
.++.+.+++.+.. .+...... |.--+.++.+ .+.|+|.-=... .=.||.+. .|+||.+.-....
T Consensus 233 ~~i~~~~~~~~~~~~~~~YDk~G----D~HYd~iSAf----iKSiRGSDpDAALywLARMLeaGEDP~fIaRRLii~AsE 304 (726)
T PRK13341 233 IHINLAIAEESIQQRAVLYDKEG----DAHFDTISAF----IKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASE 304 (726)
T ss_pred EEECHHHHHHHHHHHHHCCCCCC----CHHHHHHHHH----HHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 44359999999856660568775----1788999999----998654896789999999997599889999999999984
Q ss_pred HHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9998847984379999999999
Q gi|254780627|r 459 EIGRRFGDRDHTTVLHAVRKVE 480 (502)
Q Consensus 459 ~IG~~fg~rdHsTV~~a~~ki~ 480 (502)
+||-.=- .--.-+..+...++
T Consensus 305 DIGlAdP-~Al~va~aa~~A~e 325 (726)
T PRK13341 305 DVGLADP-QALVVVEACAAAFE 325 (726)
T ss_pred HCCCCCH-HHHHHHHHHHHHHH
T ss_conf 0236684-79999999999999
No 36
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.26 E-value=5.5e-09 Score=83.87 Aligned_cols=189 Identities=20% Similarity=0.245 Sum_probs=124.9
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHH---
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630688168646988899---
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW--- 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~--- 239 (502)
|||.+| |..... ..-++..++ |... + |.+|||+|+|||-+.+++++++.-..+...+..+.+.++..
T Consensus 13 ~~~dvv-Gq~~i~--~~L~~~~~~-~~~p-----h-lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~ 82 (337)
T PRK12402 13 LFEDIL-GQESVV--DHLSALAAS-GNLP-----H-LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGK 82 (337)
T ss_pred CHHHHC-CCHHHH--HHHHHHHHC-CCCC-----E-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCC
T ss_conf 799803-979999--999999977-9987-----6-98889298489999999999967997567833311653113564
Q ss_pred ----------HHHHH-HHC--CCHHHHHHHH------H----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf ----------99999-861--9889999997------4----03102054444531750699999999998856987999
Q gi|254780627|r 240 ----------RFASA-IRD--NCALNLKDSL------R----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVA 296 (502)
Q Consensus 240 ----------~~~~a-~~~--~~~~~fr~~~------r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~ 296 (502)
+++.. .+. ...+.+++.. + ..-+++||+++.+. +..|.-|.-++... ...-..|+
T Consensus 83 ~~i~~~~~~~~~~~~~~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt-~~Aq~aLlk~lEe~-~~~~~fIl 160 (337)
T PRK12402 83 KYLVEDPRFAHFYDDPKRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALR-EDAQQALRRIMERY-SETCRFIF 160 (337)
T ss_pred CEEECCCCHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC-HHHHHHHHHHHHCC-CCCEEEEE
T ss_conf 00101664234420153327737899999999986148877880499970713179-99999999887408-87669987
Q ss_pred ECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 6487567613630345765302115775158889999999999988643116897898999999850278889999999
Q gi|254780627|r 297 AADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 (502)
Q Consensus 297 tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal 375 (502)
+++.+- .+-+-++||. +.....+|+.+.-...|+.- ++.+++.+++++++.||....||+|.-...|
T Consensus 161 ~t~~~~----~ii~tI~SRC---~~i~F~~~s~~~i~~~L~~I-----~~~E~i~~~~~~l~~ia~~s~GdlR~ain~L 227 (337)
T PRK12402 161 STTQPS----KLIPPIRSRC---LPLFFRPVPDDEIRSVLESI-----AAAEGVEISDDGLDLIAYYAEGDLRKAILTL 227 (337)
T ss_pred ECCCCC----CCCHHHHHHC---EEEECCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 238644----4752477624---45435898999999999999-----9984999899999999998699899999999
No 37
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.24 E-value=3.2e-09 Score=85.52 Aligned_cols=230 Identities=20% Similarity=0.262 Sum_probs=148.2
Q ss_pred CCCHHHHHHHCCCCCH-----HHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 7644788763288614-----78999999998241001365555548986278888579999999999863068816864
Q gi|254780627|r 158 LDSRFVFSTFIEGSSN-----RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 (502)
Q Consensus 158 LNpryTFDnFVVG~sN-----~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~ 232 (502)
|-|+ +|+.|| |..+ ++...||+.=-+.+ .-+++|||+|||||-|.|-|+||+-.+ +.+.
T Consensus 20 lRP~-~l~efi-GQ~~vk~~L~ifI~AAk~r~e~l---------DHvLl~GPPGlGKTTLA~IIA~Emgvn-----~k~t 83 (332)
T COG2255 20 LRPK-TLDEFI-GQEKVKEQLQIFIKAAKKRGEAL---------DHVLLFGPPGLGKTTLAHIIANELGVN-----LKIT 83 (332)
T ss_pred CCCC-CHHHHC-CHHHHHHHHHHHHHHHHHCCCCC---------CEEEEECCCCCCHHHHHHHHHHHHCCC-----EEEC
T ss_conf 5865-488851-83999999999999998449876---------747864799876888999999985677-----3763
Q ss_pred EHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCC---------CHH
Q ss_conf 69888999999986198899999974031020544445317506999999999988569879996487---------567
Q gi|254780627|r 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR---------PPS 303 (502)
Q Consensus 233 ~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~---------~P~ 303 (502)
++--. -|.+++-..-.-...-|||-||.||.++ +...|-|+-..+ +-.=.|++-.+- ||=
T Consensus 84 sGp~l-------eK~gDlaaiLt~Le~~DVLFIDEIHrl~-~~vEE~LYpaME---Df~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 84 SGPAL-------EKPGDLAAILTNLEEGDVLFIDEIHRLS-PAVEEVLYPAME---DFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred CCCCC-------CCHHHHHHHHHCCCCCCEEEEEHHHHCC-HHHHHHHHHHHH---HEEEEEEECCCCCCCEEECCCCCE
T ss_conf 66201-------5726599998639867767772553147-428989646753---105778972487553476379981
Q ss_pred -------HHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf -------6136303457653021157751588899999999999886431168978989999998502788899999999
Q gi|254780627|r 304 -------ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 (502)
Q Consensus 304 -------~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~ 376 (502)
...-|..-|+.|| |++..++-=..+.-..|+++- +...++.++++.+.-||.+.++-.|--.-.|.
T Consensus 153 TLIGATTr~G~lt~PLrdRF--Gi~~rlefY~~~eL~~Iv~r~-----a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRF--GIIQRLEFYTVEELEEIVKRS-----AKILGIEIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred EEEEECCCCCCCCCHHHHHC--CCEEEEECCCHHHHHHHHHHH-----HHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 37510134664563368862--860454058889999999988-----88738776857999999863699389999999
Q ss_pred HHHHHHHHC--CCCCHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHH
Q ss_conf 999986302--4687788999998763037887-579899999999980
Q gi|254780627|r 377 QLVFRHSFA--PILTAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHY 422 (502)
Q Consensus 377 ~l~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~i~~~~I~~~V~~~~ 422 (502)
|+.-++... ..|+.+.+..+|+.+- ..+.. .-.--++..++.+.|
T Consensus 226 RVRDfa~V~~~~~I~~~ia~~aL~~L~-Vd~~GLd~~D~k~L~~li~~f 273 (332)
T COG2255 226 RVRDFAQVKGDGDIDRDIADKALKMLD-VDELGLDEIDRKYLRALIEQF 273 (332)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHH
T ss_conf 999999981688204899999998729-640255689999999999973
No 38
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.22 E-value=2e-09 Score=87.01 Aligned_cols=186 Identities=20% Similarity=0.255 Sum_probs=119.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCH-HHHHH-HHHHCCHHHHHHHHHHCCCC-
Q ss_conf 8986278888579999999999863068816864698889999999861988-99999-97403102054444531750-
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA-LNLKD-SLRNIDLLLIDDMQFLQGKL- 275 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~-~~fr~-~~r~~DvLliDDiqfl~gk~- 275 (502)
+.+|||+|.|||.|..|++++. ++..+.+++.++.+.|+---- +.+ .-|.. +-..--++.||.|.-+++++
T Consensus 169 vLLyGPPGtGKTllAkAvA~e~-----~~~fi~v~~s~l~sk~vGese-k~vr~lF~~Ar~~aP~IiFiDEiDai~~~R~ 242 (390)
T PRK03992 169 VLLYGPPGTGKTLLAKAVAHET-----NATFIRVVGSELVQKFIGEGA-RLVRELFELAREKAPSIIFIDEIDAIAAKRT 242 (390)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-----CCCEEEEEHHHHHHCCCCHHH-HHHHHHHHHHHHHCCCEEEHHHHHHHHCCCC
T ss_conf 7868989997899999999874-----888799667997524541799-9999999999970990897143256633567
Q ss_pred ---HH--HHHHHHHHH-------HHHCCCEEEEECCCCHHHHCCCCHHHHH--HHHCCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf ---69--999999999-------8856987999648756761363034576--530211577515888999999999998
Q gi|254780627|r 276 ---IQ--HEFCHLLNS-------LLDSAKQVVAAADRPPSELESLDPRIRS--RLQGGVSVPLGLHDYEMRFSILKNRLA 341 (502)
Q Consensus 276 ---tq--ee~f~~~n~-------l~~~gkqiv~tsd~~P~~l~~l~~rL~S--R~~~Gl~~~i~~Pd~e~r~~Il~~k~~ 341 (502)
+. .|.-.+++. +-..+.-+|+++-..|. .|++-|.- ||.. .+.|..||.+.|..||+..+
T Consensus 243 ~~~~~g~~ev~r~l~qLL~emDG~~~~~~V~VIaATNrpd---~LDpAllRpGRFDr--~I~iplPd~~~R~~Ilki~~- 316 (390)
T PRK03992 243 DSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRPD---ILDPALLRPGRFDR--IIEVPLPDEEGRLEILKIHT- 316 (390)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCH---HCCHHHHCCCCCCE--EEEECCCCHHHHHHHHHHHH-
T ss_conf 7888620889999999999744877778827996069810---05977754776523--88708949999999999984-
Q ss_pred HHHHHCCCCCCCHHH-HHHHHHHCCC-CHHHHHHHHHHHHHHHHH-C-CCCCHHHHHHHHHHHHC
Q ss_conf 864311689789899-9999850278-889999999999998630-2-46877889999987630
Q gi|254780627|r 342 ISQKEDPKLNINEEV-LMHVARTVTT-SGRELDGAFNQLVFRHSF-A-PILTAEIADELLSHLVN 402 (502)
Q Consensus 342 ~~~~~~~~~~l~~~v-~~~la~~~~~-~vR~Legal~~l~~~~~~-~-~~~~~~~~~~~l~~~~~ 402 (502)
.++.+.+++ ++.||....+ +-.+|...++.-...|-. + ..++.+.-..+++.+..
T Consensus 317 ------~~~~l~~dvdl~~lA~~T~G~SGADI~~lc~EA~m~Air~~r~~i~~~Df~~Ai~kv~~ 375 (390)
T PRK03992 317 ------RKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMG 375 (390)
T ss_pred ------CCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
T ss_conf ------79999988899999976879989999999999999999858986089999999999967
No 39
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.21 E-value=2.3e-10 Score=93.64 Aligned_cols=116 Identities=28% Similarity=0.351 Sum_probs=85.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCC----HHHHHHHHHHCCHHHHHHHHHHC
Q ss_conf 54898627888857999999999986306881686469888999999986198----89999997403102054444531
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC----ALNLKDSLRNIDLLLIDDMQFLQ 272 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~----~~~fr~~~r~~DvLliDDiqfl~ 272 (502)
.+++|||++|+|||+|.++|+++.. .++..++|+++.++......+...+. ............+|+||+|+.+
T Consensus 20 ~~ill~GppGtGKT~la~~ia~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l- 96 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL- 96 (151)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC--CCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHC-
T ss_conf 8089989999886599999999712--1379827854777046777757605778898999999769986982016655-
Q ss_pred CCCHHHHHHHHHHHHHH-----CCCEEEEECCCCHHHHCCCCHHHHHHHH
Q ss_conf 75069999999999885-----6987999648756761363034576530
Q gi|254780627|r 273 GKLIQHEFCHLLNSLLD-----SAKQVVAAADRPPSELESLDPRIRSRLQ 317 (502)
Q Consensus 273 gk~tqee~f~~~n~l~~-----~gkqiv~tsd~~P~~l~~l~~rL~SR~~ 317 (502)
+...+..+...++.+.. .+-.+|+++.+++. ..++..+.+||.
T Consensus 97 ~~~~~~~~~~~l~~~~~~~~~~~~~~vI~~tn~~~~--~~~~~~~~~R~~ 144 (151)
T cd00009 97 SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL--GDLDRALYDRLD 144 (151)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCC--CCHHHHHHCCCC
T ss_conf 999999999999871575406788899995289988--683776425598
No 40
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.20 E-value=1.4e-08 Score=81.00 Aligned_cols=281 Identities=19% Similarity=0.224 Sum_probs=163.9
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHH-HHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHH
Q ss_conf 76447887632886147899999-99982410013655555489862788885799999999998630688168646988
Q gi|254780627|r 158 LDSRFVFSTFIEGSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 (502)
Q Consensus 158 LNpryTFDnFVVG~sN~lA~aAA-kaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~ 236 (502)
+.|+ |||.+| |..--++---. ..+.+ .|.. .-..+|||+|+|||-|-..|+.+. +..+..++|-.
T Consensus 18 mRP~-~lde~v-GQ~HLlg~~~~lrr~v~-~~~l------~SmIl~GPPG~GKTTlA~liA~~~-----~~~f~~~sAv~ 83 (436)
T COG2256 18 LRPK-SLDEVV-GQEHLLGEGKPLRRAVE-AGHL------HSMILWGPPGTGKTTLARLIAGTT-----NAAFEALSAVT 83 (436)
T ss_pred HCCC-CHHHHC-CHHHHHCCCCHHHHHHH-CCCC------CEEEEECCCCCCHHHHHHHHHHHH-----CCCEEEECCCC
T ss_conf 0977-787855-71866189943899996-4998------605777899988889999998761-----77669951523
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHH---CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHCCCCHHH
Q ss_conf 89999999861988999999740---3102054444531750699999999998856987999648-7567613630345
Q gi|254780627|r 237 FMWRFASAIRDNCALNLKDSLRN---IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD-RPPSELESLDPRI 312 (502)
Q Consensus 237 F~~~~~~a~~~~~~~~fr~~~r~---~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd-~~P~~l~~l~~rL 312 (502)
+.-.=+..+ +++- ++.+. --+|.||-||.|. |.-|+-|+-. .++|.-|.+.+. --|. -.+..-|
T Consensus 84 ~gvkdlr~i----~e~a-~~~~~~gr~tiLflDEIHRfn-K~QQD~lLp~----vE~G~iilIGATTENPs--F~ln~AL 151 (436)
T COG2256 84 SGVKDLREI----IEEA-RKNRLLGRRTILFLDEIHRFN-KAQQDALLPH----VENGTIILIGATTENPS--FELNPAL 151 (436)
T ss_pred CCHHHHHHH----HHHH-HHHHHCCCCEEEEEEHHHHCC-HHHHHHHHHH----HCCCEEEEEECCCCCCC--EEECHHH
T ss_conf 467999999----9999-998725883499872253337-4456551033----24886899962678987--1403888
Q ss_pred HHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCC-----CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---
Q ss_conf 765302115775158889999999999988643116897-----898999999850278889999999999998630---
Q gi|254780627|r 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN-----INEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--- 384 (502)
Q Consensus 313 ~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~-----l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~--- 384 (502)
.||. .+..+.|-+-|.-..+|++-+. .+.+++. +++++.++|+....|+.|. +||-|-.....
T Consensus 152 lSR~---~vf~lk~L~~~di~~~l~ra~~---~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~---aLN~LE~~~~~~~~ 222 (436)
T COG2256 152 LSRA---RVFELKPLSSEDIKKLLKRALL---DEERGLGGQIIVLDEEALDYLVRLSNGDARR---ALNLLELAALSAEP 222 (436)
T ss_pred HHHH---HEEEEECCCHHHHHHHHHHHHH---HHHCCCCCCCCCCCHHHHHHHHHHCCCHHHH---HHHHHHHHHHHCCC
T ss_conf 6110---4156516998999999999986---5413777655668889999999862861999---98899999986277
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCHHH-CHHHHH-----HHHHHHHHCCCCHH
Q ss_conf 246877889999987630378875798999999999809999994088877401-445799-----99999985156878
Q gi|254780627|r 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV-VRPRQV-----AMYLSKIMTPRSFP 458 (502)
Q Consensus 385 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~~I~~~V~~~~~i~~~~l~s~~R~~~i-~~~Rqi-----amyL~r~~t~~s~~ 458 (502)
+..++++..++++.+-........=.--+++.+. ++.++|.-=...+ =.||.+ --|++|.++-++..
T Consensus 223 ~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~-------hKSvRGSD~dAALyylaRmi~~GeDp~yiARRlv~~AsE 295 (436)
T COG2256 223 DEVLILELLEEILQRRSARFDKDGDAHYDLISAL-------HKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASE 295 (436)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH-------HHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 7524799999998655205677763478999999-------986126883789999999996688789999999999874
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99988479843799999999999
Q gi|254780627|r 459 EIGRRFGDRDHTTVLHAVRKVEK 481 (502)
Q Consensus 459 ~IG~~fg~rdHsTV~~a~~ki~~ 481 (502)
+||-.=- +--.-++.|.+.++.
T Consensus 296 DIGlAdP-~Al~~a~aa~da~~~ 317 (436)
T COG2256 296 DIGLADP-NALQVAVAALDAVER 317 (436)
T ss_pred HCCCCCH-HHHHHHHHHHHHHHH
T ss_conf 2257883-689999999999998
No 41
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=7.3e-09 Score=83.02 Aligned_cols=196 Identities=18% Similarity=0.202 Sum_probs=136.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH------HHHHHHC------CCHHH---HHHHHH---
Q ss_conf 54898627888857999999999986306881686469888999------9999861------98899---999974---
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR------FASAIRD------NCALN---LKDSLR--- 258 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~------~~~a~~~------~~~~~---fr~~~r--- 258 (502)
| +||||++|.|||+.++-+..++....+...++|+.+....+. ....+.. ...+- +.+.+.
T Consensus 44 n-~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~ 122 (366)
T COG1474 44 N-IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKG 122 (366)
T ss_pred C-EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 0-799889998732899999999973315675799951307878799999999826899767632689999999777418
Q ss_pred HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCE-EEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHH
Q ss_conf 03102054444531750699999999998856987-99964875676136303457653021157751588899999999
Q gi|254780627|r 259 NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 (502)
Q Consensus 259 ~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkq-iv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~ 337 (502)
..=++++|++.+|..+.. +.+++++..-...+.+ +|+.-.....-...|++|+.|||..-- +.-.|=+-+.-..||+
T Consensus 123 ~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~-I~F~pY~a~el~~Il~ 200 (366)
T COG1474 123 KTVIVILDEVDALVDKDG-EVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSE-IVFPPYTAEELYDILR 200 (366)
T ss_pred CEEEEEECCHHHHHCCCC-CHHHHEECCCCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCCE-EEECCCCHHHHHHHHH
T ss_conf 759999764765415464-14551112477675379999973548899987566765068763-5528989899999999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHH--HCCCCCHHHHHHHHH
Q ss_conf 9998864311689789899999985---027888999999999999863--024687788999998
Q gi|254780627|r 338 NRLAISQKEDPKLNINEEVLMHVAR---TVTTSGRELDGAFNQLVFRHS--FAPILTAEIADELLS 398 (502)
Q Consensus 338 ~k~~~~~~~~~~~~l~~~v~~~la~---~~~~~vR~Legal~~l~~~~~--~~~~~~~~~~~~~l~ 398 (502)
.++...+ ..-.+++++++++|. ..+|+.|.-...+.+-.-.|. ..+.++.+.+..+..
T Consensus 201 ~R~~~~~---~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~ 263 (366)
T COG1474 201 ERVEEGF---SAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQE 263 (366)
T ss_pred HHHHHHH---CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 9998540---46874803999999988761864776089999999986540788537004788998
No 42
>CHL00176 ftsH cell division protein; Validated
Probab=99.14 E-value=1e-08 Score=81.95 Aligned_cols=220 Identities=22% Similarity=0.270 Sum_probs=133.1
Q ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHH---HCCCCCCCCCCCCE--EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 64478876328861478999999998---24100136555554--89862788885799999999998630688168646
Q gi|254780627|r 159 DSRFVFSTFIEGSSNRVALTAAQSIA---EVDSHGYTTVRLNP--LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 (502)
Q Consensus 159 NpryTFDnFVVG~sN~lA~aAAkaVA---e~pg~~~~~~~~NP--Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~ 233 (502)
.++-||+... | ..-|-.--..|. .+|.+-......=| ..+|||+|.|||-|..|++.|. +.-.+|++
T Consensus 171 ~~~vtF~DVa-G--~~eaK~el~EivdfLk~P~k~~~~Gak~PkGvLL~GpPGTGKTlLAkAvAgEa-----~vpF~~~s 242 (631)
T CHL00176 171 KTGITFNDVA-G--VEEAKEELEEVVTFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----EVPFFSIS 242 (631)
T ss_pred CCCCCCCCCC-C--CHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCC-----CCCEEEEE
T ss_conf 9997753228-8--58999999999998359588764499689658988989987889999985655-----88469988
Q ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHH-CCHHHHHHHHHHCCCC------HHHHHHHHHHHHH-------HCCCEEEEEC
Q ss_conf 98889999999861988-999999740-3102054444531750------6999999999988-------5698799964
Q gi|254780627|r 234 AEYFMWRFASAIRDNCA-LNLKDSLRN-IDLLLIDDMQFLQGKL------IQHEFCHLLNSLL-------DSAKQVVAAA 298 (502)
Q Consensus 234 ~e~F~~~~~~a~~~~~~-~~fr~~~r~-~DvLliDDiqfl~gk~------tqee~f~~~n~l~-------~~gkqiv~ts 298 (502)
+-+|..-|+ .+....+ +-|++--.+ --+.-||.|.-+.+++ -..|-=.|+|.|. .+..-||+++
T Consensus 243 gs~F~e~~v-Gvga~rVR~LF~~Ar~~aP~IiFIDEiDaig~~Rg~~~~gg~~e~e~tlnqLL~emDGf~~~~gViViaA 321 (631)
T CHL00176 243 GSEFVEMFV-GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGVGGGNDEREQTLNQLLTEMDGFEGNKGVIVIAA 321 (631)
T ss_pred HHHHHHHHC-CHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 378556421-5558999999999986399699987101201147898889850899999999998428887888699982
Q ss_pred CCCHHHHCCCCHHHHH--HHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH-HHHHHHHCCC-CHHHHHHH
Q ss_conf 8756761363034576--530211577515888999999999998864311689789899-9999850278-88999999
Q gi|254780627|r 299 DRPPSELESLDPRIRS--RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV-LMHVARTVTT-SGRELDGA 374 (502)
Q Consensus 299 d~~P~~l~~l~~rL~S--R~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v-~~~la~~~~~-~vR~Lega 374 (502)
-..|. .||+-|.= ||-- .+.|..||.+.|.+||+.-+. +..+.+++ ++.||....+ +--+|+-.
T Consensus 322 TNrpd---~LDpALlRPGRFDR--~I~V~lPD~~gR~~IL~vh~k-------~~~l~~dvdl~~iA~~T~GfSGAdLanl 389 (631)
T CHL00176 322 TNRID---ILDAALLRPGRFDR--QVTVSLPDFEGRLDILKVHAR-------NKKLAEDVSLELIARRTPGFSGADLANL 389 (631)
T ss_pred CCCCC---CCCHHHCCCCCCCE--EEEECCCCHHHHHHHHHHHHH-------CCCCCCCHHHHHHHHHCCCCCHHHHHHH
T ss_conf 58855---45686626887754--998269898999999999970-------7866653009999862699867888769
Q ss_pred HHHHHHHHH-HC-CCCCHHHHHHHHHH
Q ss_conf 999999863-02-46877889999987
Q gi|254780627|r 375 FNQLVFRHS-FA-PILTAEIADELLSH 399 (502)
Q Consensus 375 l~~l~~~~~-~~-~~~~~~~~~~~l~~ 399 (502)
+|.-...+. .+ ..++.+...+++..
T Consensus 390 vNEAal~AaR~~~~~it~~d~~~Aidr 416 (631)
T CHL00176 390 LNEAAILAARRRKNQITMSEIDEAIDR 416 (631)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 999999999847776478899999999
No 43
>KOG0735 consensus
Probab=99.11 E-value=1.6e-08 Score=80.50 Aligned_cols=195 Identities=19% Similarity=0.219 Sum_probs=138.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHH-HCCHHHHHHHHHHCC-C--
Q ss_conf 898627888857999999999986306881686469888999999986198899999974-031020544445317-5--
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQG-K-- 274 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r-~~DvLliDDiqfl~g-k-- 274 (502)
++|+|+.|.|||-|++|+.+++.+ .-.+-|.|++++..-..=+..+++-=+.-|-+-|+ .--+.++||++-|+| -
T Consensus 434 Ill~G~~GsGKT~L~kal~~~~~k-~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~ 512 (952)
T KOG0735 434 ILLNGPKGSGKTNLVKALFDYYSK-DLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSN 512 (952)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC-CCCEEEEEEECHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCCC
T ss_conf 898679987776999999987515-6506999975221042048999999999999988637808997050354056844
Q ss_pred C-HHH----H-HHHHH----HHHHHCCCE-EEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 0-699----9-99999----998856987-99964875676136303457653021157751588899999999999886
Q gi|254780627|r 275 L-IQH----E-FCHLL----NSLLDSAKQ-VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 (502)
Q Consensus 275 ~-tqe----e-~f~~~----n~l~~~gkq-iv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~ 343 (502)
. +|. + +-+++ ......|+. .++++ -+++..|.++|.|-.---.++.+.+|+.+.|.+||+.-+...
T Consensus 513 e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat---~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~ 589 (952)
T KOG0735 513 ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIAT---GQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKN 589 (952)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE---CHHHHHCCHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 47730289999999999999998706857999985---143420385334763147888158923567999999999755
Q ss_pred HHHCCCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHH---C-C--CCCHHHHHHHHHHHHC
Q ss_conf 43116897898999999850278-889999999999998630---2-4--6877889999987630
Q gi|254780627|r 344 QKEDPKLNINEEVLMHVARTVTT-SGRELDGAFNQLVFRHSF---A-P--ILTAEIADELLSHLVN 402 (502)
Q Consensus 344 ~~~~~~~~l~~~v~~~la~~~~~-~vR~Legal~~l~~~~~~---~-~--~~~~~~~~~~l~~~~~ 402 (502)
......+.++|+|....| ..++|+-.+.|.+.++.+ . + .+|.+.-...|++++.
T Consensus 590 -----~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P 650 (952)
T KOG0735 590 -----LSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVP 650 (952)
T ss_pred -----HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCH
T ss_conf -----3454567899888760784404479999999999998875167631018899999874076
No 44
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.02 E-value=5.3e-09 Score=83.99 Aligned_cols=205 Identities=21% Similarity=0.275 Sum_probs=140.6
Q ss_pred HHHHHCCCCCH-----HHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH
Q ss_conf 88763288614-----7899999999824100136555554898627888857999999999986306881686469888
Q gi|254780627|r 163 VFSTFIEGSSN-----RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 (502)
Q Consensus 163 TFDnFVVG~sN-----~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F 237 (502)
+|+.|| |..+ +++-.||+.==|.+. =+++|||+|||||-|-|=||+|+-.+ .+| +++=.+
T Consensus 2 ~L~eFi-GQ~~vk~~L~l~I~AAk~R~e~LD---------H~LL~GPPGLGKTTLA~IiA~Emg~~---l~i--TsGP~L 66 (305)
T TIGR00635 2 LLAEFI-GQEKVKEQLQLFIEAAKMRQEALD---------HLLLYGPPGLGKTTLAHIIANEMGVN---LKI--TSGPAL 66 (305)
T ss_pred CCHHCC-CCHHHHHHHHHHHHHHHHCCCCCC---------CEEEECCCCCCHHHHHHHHHHHHCCC---CEE--EECCCC
T ss_conf 801105-828899999999999982489734---------16631756874678999999983893---267--406755
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH------------
Q ss_conf 99999998619889999997403102054444531750699999999998856987999648756761------------
Q gi|254780627|r 238 MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSEL------------ 305 (502)
Q Consensus 238 ~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l------------ 305 (502)
-|-+++-..=.-...-|||=||-||.|+ +.+.|-||- ++-+=.=+||+-.+-.-+-+
T Consensus 67 -------~kPgDlaaiLt~L~~gDVLFIDEIHRL~-p~~EE~LYp---AMEDF~lDi~IG~Gp~Ar~v~ldLpPFTLvGA 135 (305)
T TIGR00635 67 -------EKPGDLAAILTNLEEGDVLFIDEIHRLS-PAIEELLYP---AMEDFRLDIVIGKGPSARSVRLDLPPFTLVGA 135 (305)
T ss_pred -------CCHHHHHHHHHHCCCCCEEECCHHHHCC-HHHHHHCCC---CCCCEEEEEEEECCCCCCEEEECCCCCCCCCC
T ss_conf -------4757899999705689631012565048-334531053---00121787787128985257606869442000
Q ss_pred ----CCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf ----3630345765302115775158889999999999988643116897898999999850278889999999999998
Q gi|254780627|r 306 ----ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 (502)
Q Consensus 306 ----~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~ 381 (502)
.-|..=|+||| |++..++==.-+.=..|+++. |...++.+.++.+.-||++.++-.|==.=.|.||-=+
T Consensus 136 TTR~G~lt~PLrdRF--G~~~rl~fY~~~EL~~Iv~R~-----A~~L~~ei~~~~a~~IArrSRGTPRIAnRLLRRVRDf 208 (305)
T TIGR00635 136 TTRAGMLTSPLRDRF--GIILRLEFYTPEELAEIVSRS-----AGLLNIEIEQEAALEIARRSRGTPRIANRLLRRVRDF 208 (305)
T ss_pred CCCCCCCCCCHHHHH--HHHHHCCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 034774103133454--474540268987899998753-----3441430077899999875478637888776766448
Q ss_pred HHH-C-CCCCHHHHHHHHHHH
Q ss_conf 630-2-468778899999876
Q gi|254780627|r 382 HSF-A-PILTAEIADELLSHL 400 (502)
Q Consensus 382 ~~~-~-~~~~~~~~~~~l~~~ 400 (502)
|+. + +.||.++++++|..+
T Consensus 209 A~V~~~~~I~~~i~~~AL~~L 229 (305)
T TIGR00635 209 AQVRGQGVITRDIALKALEML 229 (305)
T ss_pred HHHHCCCCCCHHHHHHHHHHH
T ss_conf 887267873889999998862
No 45
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.99 E-value=6.8e-07 Score=69.01 Aligned_cols=219 Identities=20% Similarity=0.233 Sum_probs=147.6
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE-----E
Q ss_conf 76447887632886147899999999824100136555554898627888857999999999986306881686-----4
Q gi|254780627|r 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY-----L 232 (502)
Q Consensus 158 LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y-----~ 232 (502)
.+|.| |.-++.-+-|.+.-.-.+... + ....|.|++|+|||.|+++....+... ...+.| +
T Consensus 17 pd~~~----~y~s~~h~~al~~L~~~l~~~-~-------g~~lltGe~GtGKTtllr~l~~~l~~~--~~~~~~i~~~~l 82 (269)
T TIGR03015 17 PDPDF----FYPSKGHKRAMAYLEYGLSQR-E-------GFILITGEVGAGKTTLIRNLLKRLDQE--RVVAAKLVNTRV 82 (269)
T ss_pred CCHHH----CCCCHHHHHHHHHHHHHHHCC-C-------CEEEEECCCCCCHHHHHHHHHHHCCCC--CEEEEEECCCCC
T ss_conf 98454----147866999999999999648-9-------659997299898899999999845934--548999769999
Q ss_pred EHHHHHHHHHHHHHC----CC-HHHH---H----HHHH--HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC--EEEE
Q ss_conf 698889999999861----98-8999---9----9974--0310205444453175069999999999885698--7999
Q gi|254780627|r 233 TAEYFMWRFASAIRD----NC-ALNL---K----DSLR--NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAK--QVVA 296 (502)
Q Consensus 233 ~~e~F~~~~~~a~~~----~~-~~~f---r----~~~r--~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gk--qiv~ 296 (502)
++++|.......+.- .+ ..-+ . +.++ ..-||+||+-|.+. ..+-|++=...|--.+..| |||+
T Consensus 83 ~~~~ll~~i~~~lg~~~~~~~~~~~~~~l~~~L~~~~~~g~~~vliIDEAq~L~-~~~Le~Lr~L~n~e~~~~~ll~iiL 161 (269)
T TIGR03015 83 DAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLT-PELLEELRMLSNFQTDNAKLLQIFL 161 (269)
T ss_pred CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCC-HHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 999999999998598988989999999999999999966994699972422199-9999999999701358887048999
Q ss_pred ECCCCHHHHCCCCHH--------HHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCH
Q ss_conf 648756761363034--------576530211577515888999999999998864311689789899999985027888
Q gi|254780627|r 297 AADRPPSELESLDPR--------IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 (502)
Q Consensus 297 tsd~~P~~l~~l~~r--------L~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~v 368 (502)
.+. |. |+++ |..|. .+.+.+.|-+.|.-.+.++.++....+. ....+++++++.|.+...|..
T Consensus 162 ~Gq--pe----L~~~L~~~~~~~l~qRI--~~~~~L~pl~~eet~~YI~~RL~~AG~~-~~~~Ft~~A~~~I~~~S~G~P 232 (269)
T TIGR03015 162 VGQ--PE----FRETLQSPQLQQLRQRI--IASCHLGPLDREETREYIEHRLERAGNR-DAPVFSEGAFDAIHRFSRGIP 232 (269)
T ss_pred ECC--HH----HHHHHCCCCHHHHHHCE--EEEEEECCCCHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHCCCCH
T ss_conf 578--67----99987274025455507--6799847999899999999999866999-999859999999999869900
Q ss_pred HHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHH
Q ss_conf 9999999999998630--2468778899999876
Q gi|254780627|r 369 RELDGAFNQLVFRHSF--APILTAEIADELLSHL 400 (502)
Q Consensus 369 R~Legal~~l~~~~~~--~~~~~~~~~~~~l~~~ 400 (502)
|.+.-...+....+.. ...|+.+.+++++.++
T Consensus 233 R~IN~Lc~~aLl~a~~~~~~~I~~~~v~~~~~el 266 (269)
T TIGR03015 233 RLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 8999999999999999488867999999999976
No 46
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.99 E-value=6e-08 Score=76.51 Aligned_cols=216 Identities=17% Similarity=0.238 Sum_probs=127.7
Q ss_pred CCHHHHHHHCCCCCHHHHHH--HHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE----
Q ss_conf 64478876328861478999--999998241001365555548986278888579999999999863068816864----
Q gi|254780627|r 159 DSRFVFSTFIEGSSNRVALT--AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL---- 232 (502)
Q Consensus 159 NpryTFDnFVVG~sN~lA~a--AAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~---- 232 (502)
+.+|||+..+ |.+-.|.-+ .|+.+|... -|++|.|.+|+||++|-+||-++-... +...+-+
T Consensus 319 ~~~~~f~~l~-g~s~~~~~~~~~a~~~a~~~---------~pVLI~GE~GtGKe~lAraIH~~S~r~--~~pfv~vnC~a 386 (639)
T PRK11388 319 KVSHTFDHMP-QDSPQMRRLIHFGRQAAKSS---------FPILLCGEEGVGKALLAQAIHNESERA--AGPYIAVNCQL 386 (639)
T ss_pred CCCCCHHHCC-CCCHHHHHHHHHHHHHHCCC---------CCEEEECCCCCCHHHHHHHHHHCCCCC--CCCEEEEECCC
T ss_conf 7888855446-79999999999999996889---------968988989810999999999557778--99818987898
Q ss_pred -EHHHHHHHHHHHHH----CCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHH--H--H------CCCEEEEE
Q ss_conf -69888999999986----19889999997403102054444531750699999999998--8--5------69879996
Q gi|254780627|r 233 -TAEYFMWRFASAIR----DNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSL--L--D------SAKQVVAA 297 (502)
Q Consensus 233 -~~e~F~~~~~~a~~----~~~~~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l--~--~------~gkqiv~t 297 (502)
+.+.+..++.-.-. .+..-.|. ..+--.|++|+|..+. ...|..|+..+.+- . . -.-+||.+
T Consensus 387 i~~~~~e~elfG~~~~~~~~g~~g~~e--~A~gGTL~LdeI~~lp-~~~Q~~LlrvL~~~~~~r~g~~~~~~vdvRiiaa 463 (639)
T PRK11388 387 LPDEALAEEFLGSDRTDSENGRLSKFE--LAHGGTLFLEKVEYLS-VELQSALLQVLKTGVITRLDSRRLIPVDVRVIAT 463 (639)
T ss_pred CCHHHHHHHHCCCCCCCCCCCCCCHHH--CCCCCEEEECCHHHCC-HHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEE
T ss_conf 984678998738776764346686244--0369828846726499-9999999999865937856999466642799973
Q ss_pred CCCCHHHH---CCCCHHHHHHHHCCEEEEECCCCHHHHHH----HHHHHHHHHHH-HCCCCCCCHHHHHHHHH-HCCCCH
Q ss_conf 48756761---36303457653021157751588899999----99999988643-11689789899999985-027888
Q gi|254780627|r 298 ADRPPSEL---ESLDPRIRSRLQGGVSVPLGLHDYEMRFS----ILKNRLAISQK-EDPKLNINEEVLMHVAR-TVTTSG 368 (502)
Q Consensus 298 sd~~P~~l---~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~----Il~~k~~~~~~-~~~~~~l~~~v~~~la~-~~~~~v 368 (502)
+.+.+.++ ..|.+.|.-||.. + .|.-|-+-.|.. +++.-+..... ....+.+++++++.|.. .-.+||
T Consensus 464 t~~~l~~~v~~g~fr~dLyyrl~~-~--~i~lPpLReR~~Di~~L~~~~l~~~~~~~~~~~~ls~~a~~~L~~y~WPGNv 540 (639)
T PRK11388 464 TTADLAMLVEQNRFSRQLYYALHA-F--EITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGND 540 (639)
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHH-H--HCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHH
T ss_conf 645089998749854999987674-4--1057332325343999999999999997199999899999999728999799
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 9999999999998630246877889
Q gi|254780627|r 369 RELDGAFNQLVFRHSFAPILTAEIA 393 (502)
Q Consensus 369 R~Legal~~l~~~~~~~~~~~~~~~ 393 (502)
|||+..+.+....+. ++.|+.+..
T Consensus 541 rEL~nvl~~a~~~~~-~~~I~~~~L 564 (639)
T PRK11388 541 FELRSVIENLALSSD-NGRIRLSDL 564 (639)
T ss_pred HHHHHHHHHHHHHCC-CCCCCHHHC
T ss_conf 999999999998389-984267978
No 47
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.97 E-value=5.2e-08 Score=76.92 Aligned_cols=221 Identities=19% Similarity=0.241 Sum_probs=129.1
Q ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHH---HCCCCCCCCCCCCE--EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 64478876328861478999999998---24100136555554--89862788885799999999998630688168646
Q gi|254780627|r 159 DSRFVFSTFIEGSSNRVALTAAQSIA---EVDSHGYTTVRLNP--LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 (502)
Q Consensus 159 NpryTFDnFVVG~sN~lA~aAAkaVA---e~pg~~~~~~~~NP--Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~ 233 (502)
+++-||+.- -|- .-|..--..|. .+|.+-......=| ..+|||+|.|||.|..|++.|. +.-.++++
T Consensus 146 ~~~vtF~DV-aG~--~eaK~el~EiVdfLk~P~k~~~~Gak~PkGvLL~GPPGtGKTlLAkAvAgEa-----~vpF~~~s 217 (644)
T PRK10733 146 QIKTTFADV-AGC--DEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA-----KVPFFTIS 217 (644)
T ss_pred CCCCCCCCC-CCC--HHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCC-----CCEEEEEE
T ss_conf 898771040-897--8999999999998129799997499799851777989987789999986455-----98089978
Q ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHHC-CHHHHHHHHHHCCCC-H-----HHHHHHHHHHH-------HHCCCEEEEEC
Q ss_conf 98889999999861988-9999997403-102054444531750-6-----99999999998-------85698799964
Q gi|254780627|r 234 AEYFMWRFASAIRDNCA-LNLKDSLRNI-DLLLIDDMQFLQGKL-I-----QHEFCHLLNSL-------LDSAKQVVAAA 298 (502)
Q Consensus 234 ~e~F~~~~~~a~~~~~~-~~fr~~~r~~-DvLliDDiqfl~gk~-t-----qee~f~~~n~l-------~~~gkqiv~ts 298 (502)
+-+|..-|+-. ....+ +-|++-..+. -+..||.|.-+.+++ + .+|-=+|+|.| ..+..-||+++
T Consensus 218 gsef~e~~vGv-ga~rVR~lF~~Ar~~aP~IIFIDEiDaig~~R~~~~~gg~~e~~~tlNqlL~EmDGf~~~~~ViviaA 296 (644)
T PRK10733 218 GSDFVEMFVGV-GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAA 296 (644)
T ss_pred HHHHHHEEEEC-CHHHHHHHHHHHHHCCCEEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 47730222530-68999999999996699799995322036667898889832888789999999548888787699962
Q ss_pred CCCHHHHCCCCHHHHH--HHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH-HHHHHHHHCCC-CHHHHHHH
Q ss_conf 8756761363034576--53021157751588899999999999886431168978989-99999850278-88999999
Q gi|254780627|r 299 DRPPSELESLDPRIRS--RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE-VLMHVARTVTT-SGRELDGA 374 (502)
Q Consensus 299 d~~P~~l~~l~~rL~S--R~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~-v~~~la~~~~~-~vR~Lega 374 (502)
-..|. .||+-|.- ||-. .+.|..||.+.|.+||+..+. +..+.++ -++.||....+ +--+|+-.
T Consensus 297 TNrpd---~LD~ALlRPGRFDr--~I~V~lPd~~~R~~ILkvh~~-------~~~l~~dvdl~~lA~~T~GfSGADLaNl 364 (644)
T PRK10733 297 TNRPD---VLDPALLRPGRFDR--QVVVGLPDVRGREQILKVHMR-------RVPLAPDIDAAIIARGTPGFSGADLANL 364 (644)
T ss_pred CCCCC---CCCHHHHCCCCCCE--EEEECCCCHHHHHHHHHHHHC-------CCCCCCCCCHHHHHCCCCCCCHHHHCCH
T ss_conf 69975---54777716888655--999779898899999999964-------8877731158988445998670333259
Q ss_pred HHHHHHHHH-HC-CCCCHHHHHHHHHHH
Q ss_conf 999999863-02-468778899999876
Q gi|254780627|r 375 FNQLVFRHS-FA-PILTAEIADELLSHL 400 (502)
Q Consensus 375 l~~l~~~~~-~~-~~~~~~~~~~~l~~~ 400 (502)
+|.-...|. -+ ..++.....+++..+
T Consensus 365 vNEAAl~AaR~~k~~It~~d~e~A~drV 392 (644)
T PRK10733 365 VNEAALFAARGNKRVVSMVEFEKAKDKI 392 (644)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 9999999987087543076689988885
No 48
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.91 E-value=5.1e-08 Score=76.99 Aligned_cols=211 Identities=15% Similarity=0.138 Sum_probs=131.1
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE---EEHHHHHH
Q ss_conf 887632886147899999999824100136555554898627888857999999999986306881686---46988899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY---LTAEYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y---~~~e~F~~ 239 (502)
+|+..| |... ..-+-..++.. |+.. .-..++||.|+|||.+..+++..+.-..|...-.| -++..+..
T Consensus 14 ~F~eII-GQe~-iv~~L~nAI~~--~Ria-----HAYLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~sC~~I~~ 84 (613)
T PRK05896 14 NFKQII-GQEL-IKKILVNAILN--NKLT-----HAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINT 84 (613)
T ss_pred CHHHHC-CCHH-HHHHHHHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 765523-8299-99999999984--9976-----2277558998488999999999966999999998888878999856
Q ss_pred H------HHHHHHCCCHHHHHHHHH---------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 9------999986198899999974---------0310205444453175069999999999885698799964875676
Q gi|254780627|r 240 R------FASAIRDNCALNLKDSLR---------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 240 ~------~~~a~~~~~~~~fr~~~r---------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
. .+.+..+..+++.|+-.+ ..-|.+||++|.+. ..++.-|+-|+.+=-.+..=|.+|++ |.
T Consensus 85 g~h~DviEIdaasn~gIDeIReLie~~~~~P~~gkyKV~IIDEah~Ln-~~AaNALLKtLEEPP~~viFIL~Tte--p~- 160 (613)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-TSAWNALLKTLEEPPKHVVFIFATTE--FQ- 160 (613)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCC-HHHHHHHHHHCCCCCCCCEEEEEECC--HH-
T ss_conf 999986884065557889999999970858757994599981622179-99999999853489878379998288--15-
Q ss_pred HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
.+.+-++||++.=---.|...+...|++-+ ++.+++.+++++++.||....|++|+-.+.|.++.+++.
T Consensus 161 --KLLpTIlSRCQrf~Fkri~~~~I~~~L~~I--------~~kE~i~ie~~AL~~Ia~~adGs~RDAlslLdQ~~~~~~- 229 (613)
T PRK05896 161 --KIPLTIISRCQRYNFKKLNNSELQELLKSI--------AKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKN- 229 (613)
T ss_pred --HCCHHHHHCCCCEECCCCCHHHHHHHHHHH--------HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-
T ss_conf --493766403550017889989999999999--------997399878999999999768848789889999998356-
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24687788999998
Q gi|254780627|r 385 APILTAEIADELLS 398 (502)
Q Consensus 385 ~~~~~~~~~~~~l~ 398 (502)
+.+|.+.+.+.++
T Consensus 230 -~~it~~~v~~~~g 242 (613)
T PRK05896 230 -KKIDIEDINKTFG 242 (613)
T ss_pred -CCCCHHHHHHHHC
T ss_conf -8862999999967
No 49
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=98.91 E-value=1.4e-08 Score=81.01 Aligned_cols=106 Identities=22% Similarity=0.343 Sum_probs=74.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH---C--CCHHHHHHHH-HHCCHHHHHHHHHHC
Q ss_conf 898627888857999999999986306881686469888999999986---1--9889999997-403102054444531
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR---D--NCALNLKDSL-RNIDLLLIDDMQFLQ 272 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~---~--~~~~~fr~~~-r~~DvLliDDiqfl~ 272 (502)
|||||+||.|||+||...-..+--.. ..|+ +=.+||.++-..++ . +.+...-+.+ ..+.||++|-.|--
T Consensus 64 lYl~G~VGrGKTmLMDlFy~~lp~~~-K~R~---HFh~FM~~vH~~l~~~~~~~dpl~~va~~l~~~~~lLCfDEFqV~- 138 (361)
T pfam03969 64 LYLWGGVGRGKTHLMDSFFESLPGER-KRRT---HFHRFMFRVHDELTTLQGGDDPLPIAADRFANEARLLCFDEFEVD- 138 (361)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCC-CCCC---CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEEEEC-
T ss_conf 89889988869999999998677534-4456---678999999999999766776389999999725877997635616-
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH--CCCC
Q ss_conf 750699999999998856987999648756761--3630
Q gi|254780627|r 273 GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSEL--ESLD 309 (502)
Q Consensus 273 gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l--~~l~ 309 (502)
.=.--.-+-.+|.+|.+.|--+|.||.++|.+| .||.
T Consensus 139 DIaDAMIL~rLf~~Lf~~gvvlV~TSN~~P~~LY~~GLq 177 (361)
T pfam03969 139 DIGDAMILGRLFEALFARGVSLVATSNTAPEQLYRNGLN 177 (361)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCC
T ss_conf 788899999999999977978998089998998368741
No 50
>KOG0730 consensus
Probab=98.87 E-value=1e-07 Score=74.89 Aligned_cols=163 Identities=24% Similarity=0.344 Sum_probs=118.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHH--HHCCHHHHHHHHHHCCCC-
Q ss_conf 89862788885799999999998630688168646988899999998619889999997--403102054444531750-
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL--RNIDLLLIDDMQFLQGKL- 275 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~--r~~DvLliDDiqfl~gk~- 275 (502)
+.+||++|.|||-|+.||+++.. +.++++++.+.+..|.---.++--..|.+-. ..--+++||+|.-+.+|+
T Consensus 221 ~Ll~gppg~Gkt~l~~aVa~e~~-----a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~ 295 (693)
T KOG0730 221 LLLYGPPGTGKTFLVRAVANEYG-----AFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKRE 295 (693)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHC-----CEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHCCCCC
T ss_conf 44438999981899999999737-----2257406289998524631778999999986659980775876762377643
Q ss_pred -HHH-------HHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHH-HHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf -699-------99999999885698799964875676136303457-653021157751588899999999999886431
Q gi|254780627|r 276 -IQH-------EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR-SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE 346 (502)
Q Consensus 276 -tqe-------e~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~-SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~ 346 (502)
++. .++...+-+-..+++||+.+-+-|..| ++-|+ .||-- -++|.-|+-.-|+.||+.-.+.+
T Consensus 296 ~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sl---d~alRRgRfd~--ev~IgiP~~~~RldIl~~l~k~~--- 367 (693)
T KOG0730 296 GADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSL---DPALRRGRFDR--EVEIGIPGSDGRLDILRVLTKKM--- 367 (693)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC---CHHHHCCCCCC--EEEECCCCCHHHHHHHHHHHHHC---
T ss_conf 33248889999999998527676746999715885556---85652478853--15744898335889999998616---
Q ss_pred CCCCCCCHHHHHHHHHHCCCCH-HHHHHHHHH
Q ss_conf 1689789899999985027888-999999999
Q gi|254780627|r 347 DPKLNINEEVLMHVARTVTTSG-RELDGAFNQ 377 (502)
Q Consensus 347 ~~~~~l~~~v~~~la~~~~~~v-R~Legal~~ 377 (502)
+.. ++..++.+|...++=| .+|.+.+..
T Consensus 368 --~~~-~~~~l~~iA~~thGyvGaDL~~l~~e 396 (693)
T KOG0730 368 --NLL-SDVDLEDIAVSTHGYVGADLAALCRE 396 (693)
T ss_pred --CCC-CHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf --887-25568999987346147879999999
No 51
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.85 E-value=4.3e-07 Score=70.41 Aligned_cols=281 Identities=17% Similarity=0.157 Sum_probs=155.1
Q ss_pred CCCHHHHHHHCCCCCHHHH--HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf 7644788763288614789--99999998241001365555548986278888579999999999863068816864698
Q gi|254780627|r 158 LDSRFVFSTFIEGSSNRVA--LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 (502)
Q Consensus 158 LNpryTFDnFVVG~sN~lA--~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e 235 (502)
.++.++||++| |.|-.|- ..-|+.+|..+ -|++|+|.+|+||.+|.+||-+.-... +.-.+-+.+.
T Consensus 197 ~~~~~~F~~ii-g~S~~m~~v~~~a~r~A~~d---------~pVLI~GEsGTGKellAraIH~~S~R~--~~pFv~vnC~ 264 (513)
T PRK10820 197 VQDVSAFSQIV-AVSPKMKHVVEQARKLAMLS---------APLLITGDTGTGKDLFAYACHLASPRA--KKPYLALNCA 264 (513)
T ss_pred CCCCCCHHHHE-ECCHHHHHHHHHHHHHHCCC---------CCEEEECCCCCCHHHHHHHHHHCCCCC--CCCCEEEECC
T ss_conf 25416877751-08999999999999985989---------988998989824999999999668878--9982688899
Q ss_pred HHHHHHHHHHHCCC-HHHHHHHH--HHCCHHHHHHHHHHCCCCHHHHHHHHHHHH----------HHCCCEEEEECCCCH
Q ss_conf 88999999986198-89999997--403102054444531750699999999998----------856987999648756
Q gi|254780627|r 236 YFMWRFASAIRDNC-ALNLKDSL--RNIDLLLIDDMQFLQGKLIQHEFCHLLNSL----------LDSAKQVVAAADRPP 302 (502)
Q Consensus 236 ~F~~~~~~a~~~~~-~~~fr~~~--r~~DvLliDDiqfl~gk~tqee~f~~~n~l----------~~~gkqiv~tsd~~P 302 (502)
....+.+.+---|. .+.-+-.+ -+---|.+|+|..+. ...|.-|+..+..- ..-+-+||.++.+.+
T Consensus 265 alp~~l~eseLFG~a~~~~~G~fe~A~gGTLfLdEI~~l~-~~~Q~kLLr~Lq~~~~~rvG~~~~~~~dvRiIaaT~~dL 343 (513)
T PRK10820 265 SIPEDAVESELFGHAPEGKKGFFEQANGGSVLLDEIGEMS-PRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNL 343 (513)
T ss_pred CCCHHHHHHHHCCCCCCCCCCCEEECCCCEEEEECHHHCC-HHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEECCCHHH
T ss_conf 8996789998638766688975578589889997836599-999999999986897996599853567789996265309
Q ss_pred HHHC---CCCHHHHHHHHCCEEEEECCCCHHHHHH----HHHHHHHHHHHHCCC---CCCCHHHHHHHH-HHCCCCHHHH
Q ss_conf 7613---6303457653021157751588899999----999999886431168---978989999998-5027888999
Q gi|254780627|r 303 SELE---SLDPRIRSRLQGGVSVPLGLHDYEMRFS----ILKNRLAISQKEDPK---LNINEEVLMHVA-RTVTTSGREL 371 (502)
Q Consensus 303 ~~l~---~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~----Il~~k~~~~~~~~~~---~~l~~~v~~~la-~~~~~~vR~L 371 (502)
.++- .|.+-|.-|+. ++.|.-|-+-.|.. +++..+... +...+ ..++++++++|. -...||||||
T Consensus 344 ~~lv~~g~FReDLyyRL~---v~~I~lPpLReR~eDI~~L~~~fl~~~-~~~~g~~~~~ls~~a~~~L~~y~WPGNVREL 419 (513)
T PRK10820 344 VELVQKGLFREDLYYRLN---VLTLNLPPLRDCPQDIMPLTELFVARF-ADEQGVPRPKLSADLSTVLTRYGWPGNVRQL 419 (513)
T ss_pred HHHHHCCCCCHHHHHHHH---CCCCCCCCHHHCHHHHHHHHHHHHHHH-HHHCCCCCCCCCHHHHHHHHHCCCCCHHHHH
T ss_conf 999872985088999861---672558883446556999999999999-9975999898479999999708999799999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCHHHCHHHHHHHHHHHH
Q ss_conf 99999999986302468778899999876303788757989999999998099999940888774014457999999998
Q gi|254780627|r 372 DGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 (502)
Q Consensus 372 egal~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~I~~~V~~~~~i~~~~l~s~~R~~~i~~~RqiamyL~r~ 451 (502)
+.++.+....+. +..++.+... +.+... .....+.+ .+.-+..+... .+=|++-.-+.+.
T Consensus 420 ~n~iera~~~~~-g~~i~~~di~--lp~~~~--~~~~~~~~--------~~~~sL~e~~~-------~~Er~~l~~l~~~ 479 (513)
T PRK10820 420 KNAIYRALTQLE-GYELRPQDIL--LPDYDA--ATVAVGED--------AMEGSLDDITS-------RFERSVLTQLYRN 479 (513)
T ss_pred HHHHHHHHHHCC-CCCCCHHHCC--CCCCCC--CCCCCCCC--------CCCCCHHHHHH-------HHHHHHHHHHHHH
T ss_conf 999999999579-9853499828--854344--44676644--------44799999999-------9999999999987
Q ss_pred HCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 515687899988479843799999999
Q gi|254780627|r 452 MTPRSFPEIGRRFGDRDHTTVLHAVRK 478 (502)
Q Consensus 452 ~t~~s~~~IG~~fg~rdHsTV~~a~~k 478 (502)
. -+-.+.++.+| =+|||+..=.++
T Consensus 480 ~--~~~~kaAk~LG-ISrttL~~Klkk 503 (513)
T PRK10820 480 Y--PSTRKLAKRLG-VSHTAIANKLRE 503 (513)
T ss_pred C--CCHHHHHHHHC-CCHHHHHHHHHH
T ss_conf 8--89999999979-989999999998
No 52
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.84 E-value=6e-07 Score=69.37 Aligned_cols=211 Identities=17% Similarity=0.189 Sum_probs=127.9
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCCE--EEEEHHHHHH
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630-68816--8646988899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ-PNLRV--VYLTAEYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~-~~~~v--~y~~~e~F~~ 239 (502)
+|+..| |... ..-+-..++.. |+.. .-+.++|+.|+|||-+..+++..+.-.+ |+..- .|-++..+.+
T Consensus 12 ~F~evI-GQe~-iv~~L~nAi~~--~Rl~-----HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~~PCg~C~sC~~i~~ 82 (523)
T PRK08451 12 HFDELI-GQES-VSKTLSLALDN--NRLA-----HAYLFSGLRGSGKTSSARIFSRALVCEQGPSSTPCGTCAQCQAALE 82 (523)
T ss_pred CHHHCC-CCHH-HHHHHHHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 654404-9499-99999999985--9967-----1587578998688999999999975999999898887888999864
Q ss_pred H----H--HHHHHCCCHHHHHHHHH---------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 9----9--99986198899999974---------0310205444453175069999999999885698799964875676
Q gi|254780627|r 240 R----F--ASAIRDNCALNLKDSLR---------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 240 ~----~--~~a~~~~~~~~fr~~~r---------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
. + ++|-.++.+++.|+-.+ ..-|.+||++|.+. ..++.-|+-|+.+=-.+-.=|..|++ |.
T Consensus 83 g~hpDViEiDaasn~gID~IReLie~~~~~P~~gryKV~IIDEah~Lt-~~A~NALLKTLEEPP~~vvFILaTTe--p~- 158 (523)
T PRK08451 83 GRHIDIIEMDAASNRGIDDIRNLIEQTKYKPSMARFKIFIIDEVHMLT-KEAFNALLKTLEEPPSYVKFILATTD--PL- 158 (523)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC-HHHHHHHHHHCCCCCCCCEEEEECCC--HH-
T ss_conf 899985510553336899999999972358867972799982603048-99999999970389878379997599--47-
Q ss_pred HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
.+.+-++||.+.=---.|...+.-.|+. .- +..+++.++++++++||....|++|+-...|.+.++++.
T Consensus 159 --KLp~TIlSRCQ~f~Fk~I~~~~I~~~L~---~I-----~~~E~i~~e~~AL~~IA~~a~GslRDalslLdQ~i~~~~- 227 (523)
T PRK08451 159 --KLPATILSRTQHFRFKQIPQNSIISHLK---TI-----LNKEGVSYEPEALEILARSGSGSLRDTLTLLDQAIIFCK- 227 (523)
T ss_pred --HCHHHHHHHHHCCCCCCCCHHHHHHHHH---HH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-
T ss_conf --6848887420311033799999999999---99-----998399879999999999778948689879999998479-
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24687788999998
Q gi|254780627|r 385 APILTAEIADELLS 398 (502)
Q Consensus 385 ~~~~~~~~~~~~l~ 398 (502)
+.++.+.+.++|+
T Consensus 228 -~~i~~~~v~~~lG 240 (523)
T PRK08451 228 -NAITESKVADMLG 240 (523)
T ss_pred -CCCCHHHHHHHHC
T ss_conf -9877999999858
No 53
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.83 E-value=1.3e-06 Score=66.91 Aligned_cols=211 Identities=16% Similarity=0.164 Sum_probs=130.1
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCC--EEEEEHHHHHH
Q ss_conf 887632886147899999999824100136555554898627888857999999999986306-881--68646988899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP-NLR--VVYLTAEYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~-~~~--v~y~~~e~F~~ 239 (502)
+|+..| |... +..+-++..++ |+.. +-+..+|+.|.|||-+..+++..+.-.++ ... -.|-++..+.+
T Consensus 14 ~F~dvv-GQe~--vv~~L~nai~~-~rl~-----HAyLFsGprG~GKTt~ArilAk~LnC~~~~~~~PCg~C~sC~~i~~ 84 (560)
T PRK06647 14 DFNSLE-GQDF--VVETLKHSIEK-NKIA-----NAYIFSGPRGVGKTSSARAFARCLNCVNGPTIMPCGECFSCKSIDN 84 (560)
T ss_pred CHHHHC-CCHH--HHHHHHHHHHC-CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 654403-9499--99999999974-9977-----4366328998789999999999965999999888878878888745
Q ss_pred H------HHHHHHCCCHHHHHH---HHH------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 9------999986198899999---974------0310205444453175069999999999885698799964875676
Q gi|254780627|r 240 R------FASAIRDNCALNLKD---SLR------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 240 ~------~~~a~~~~~~~~fr~---~~r------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
. -+++-.++.+++.|+ +.+ ..-|.+||++|.+. +.++.-|.-|+.+--.+-.=|..|.+ |.
T Consensus 85 g~~~DviEidaasn~~VddIR~l~e~v~~~P~~~~yKV~IIDEahmLt-~~A~NALLKtLEEPP~~~~FILaTte--~~- 160 (560)
T PRK06647 85 DSSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-NSAFNALLKTIEEPPPYIVFIFATTE--VH- 160 (560)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCC-HHHHHHHHHHHHCCCCCEEEEEECCC--HH-
T ss_conf 999875764364548889999999986328766870699964656559-99999999986348875599997799--47-
Q ss_pred HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
.+.+-+.||.+ ..+..+-..+.-..-|+.- ++.+++.++++++..||.+..|++|+-...+.++.++.
T Consensus 161 --KI~~TI~SRCQ---~f~Fk~i~~~~I~~~L~~I-----~~~E~i~~e~~AL~lIa~~a~Gs~RDalslldq~i~~~-- 228 (560)
T PRK06647 161 --KLPATIKSRCQ---HFNFRLLSLEKIYEMLKKV-----CLEDDIKYEDEALKWIAYKSGGSVRDAYTLFDQIVSFS-- 228 (560)
T ss_pred --HCHHHHHHHHE---EEECCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--
T ss_conf --68489996510---4105559999999999999-----98679887999999999977895888999999999607--
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24687788999998
Q gi|254780627|r 385 APILTAEIADELLS 398 (502)
Q Consensus 385 ~~~~~~~~~~~~l~ 398 (502)
++.++.+.+.+.|+
T Consensus 229 ~~~i~~~~v~~~lG 242 (560)
T PRK06647 229 NSDITLEQIRSKMG 242 (560)
T ss_pred CCCCCHHHHHHHHC
T ss_conf 99778999999868
No 54
>KOG0730 consensus
Probab=98.83 E-value=8e-07 Score=68.52 Aligned_cols=195 Identities=20% Similarity=0.293 Sum_probs=127.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCH-HHHHHHHH--HCCHHHHHHHHHHCCCC
Q ss_conf 8986278888579999999999863068816864698889999999861988-99999974--03102054444531750
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA-LNLKDSLR--NIDLLLIDDMQFLQGKL 275 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~-~~fr~~~r--~~DvLliDDiqfl~gk~ 275 (502)
..+|||+|.|||-|..|++|+.. +..+++.+.+..+.|+--- ++.+ +-|+ +-| .--++-+|-|.-+++.+
T Consensus 471 VLlyGPPGC~KT~lAkalAne~~-----~nFlsvkgpEL~sk~vGeS-Er~ir~iF~-kAR~~aP~IiFfDEiDsi~~~R 543 (693)
T KOG0730 471 VLLYGPPGCGKTLLAKALANEAG-----MNFLSVKGPELFSKYVGES-ERAIREVFR-KARQVAPCIIFFDEIDALAGSR 543 (693)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC-----CCEEECCCHHHHHHHCCCH-HHHHHHHHH-HHHHCCCEEEEHHHHHHHHHCC
T ss_conf 77778998624789999864635-----8726415789987751825-899999999-9862698377446666666304
Q ss_pred ------HHHH----HHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHH--HHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf ------6999----99999998856987999648756761363034576--53021157751588899999999999886
Q gi|254780627|r 276 ------IQHE----FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS--RLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 (502)
Q Consensus 276 ------tqee----~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~S--R~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~ 343 (502)
.++- |+.-+|-+-...+-+|+++-.-|.. ++.-|.. ||-. .+-|.+||.++|++||+..+.
T Consensus 544 ~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~---ID~ALlRPGRlD~--iiyVplPD~~aR~~Ilk~~~k-- 616 (693)
T KOG0730 544 GGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDM---IDPALLRPGRLDR--IIYVPLPDLEARLEILKQCAK-- 616 (693)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHH---CCHHHCCCCCCCE--EEEECCCCHHHHHHHHHHHHH--
T ss_conf 787551489999999987004101470899950588101---2697759865330--575158347889999999973--
Q ss_pred HHHCCCCCCCHH-HHHHHHHHCCC-CHHHHHHHHHHHHHHHH---HC-CCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 431168978989-99999850278-88999999999999863---02-46877889999987630378875798999999
Q gi|254780627|r 344 QKEDPKLNINEE-VLMHVARTVTT-SGRELDGAFNQLVFRHS---FA-PILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 (502)
Q Consensus 344 ~~~~~~~~l~~~-v~~~la~~~~~-~vR~Legal~~l~~~~~---~~-~~~~~~~~~~~l~~~~~~~~~~~i~~~~I~~~ 417 (502)
+++++++ -++.||+...+ |-++|.+....-...+. +. ..|...--.++++- ..+.++.+.+..+
T Consensus 617 -----kmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~-----~r~s~~~~~~~~Y 686 (693)
T KOG0730 617 -----KMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKA-----VRPSLTSELLEKY 686 (693)
T ss_pred -----CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH-----CCCCCCHHHHHHH
T ss_conf -----399986556999999854677389999999999999987526543448999999985-----0366888999999
No 55
>PRK06672 hypothetical protein; Validated
Probab=98.82 E-value=2.3e-08 Score=79.51 Aligned_cols=74 Identities=18% Similarity=0.450 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHCCHHHHHHHCCCEEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 999999999986697889743024057885399898983898999999998999999999986277665078972
Q gi|254780627|r 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR 112 (502)
Q Consensus 38 iW~~il~~Lk~~l~~~~F~tWi~pL~~i~~e~~~L~L~vPn~FikdwIe~~Y~~~I~~al~~~~g~~~~I~i~i~ 112 (502)
-|.++.+.++-.++.+.|++||..+.. .++++.|+|++||.|.++|++++|.+.+...+++.++.-..|.|...
T Consensus 4 nW~evK~Kir~qISkPSYETW~tnTtv-~ledD~L~IY~~NEFardWles~YKeLv~~~~rEm~~tTfEIQFdL~ 77 (341)
T PRK06672 4 NWTEVKEKIRPQISKPSYETWFTNTTV-YLEDDILTIYCPNEFARDWLESHYKELVFNTLREMFNTTFEIQFDLC 77 (341)
T ss_pred CHHHHHHHCCCCCCCCCHHHHHHCCEE-EECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEC
T ss_conf 578887650634478526656224358-85075689975837889999999999999999998488279998634
No 56
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.81 E-value=3e-07 Score=71.50 Aligned_cols=211 Identities=17% Similarity=0.185 Sum_probs=129.7
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC----EEEEEHHHHH
Q ss_conf 887632886147899999999824100136555554898627888857999999999986306881----6864698889
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR----VVYLTAEYFM 238 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~----v~y~~~e~F~ 238 (502)
||+.-| |...-. -+--.++.. |+.. .-+..+|+.|+|||-+..+++..+.-.+|... -.|-++..+.
T Consensus 15 ~F~dvV-GQ~~vv-~~L~nai~~--~ri~-----HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~C~~I~ 85 (462)
T PRK06305 15 TFSEIL-GQDAVV-TVLKNALRF--NRAA-----HAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAICKEIS 85 (462)
T ss_pred CHHHHC-CCHHHH-HHHHHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 876604-909999-999999984--9976-----2343038998599999999999967999988889887668889986
Q ss_pred HH------HHHHHHCCCHHHHHH---H--HH----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 99------999986198899999---9--74----031020544445317506999999999988569879996487567
Q gi|254780627|r 239 WR------FASAIRDNCALNLKD---S--LR----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPS 303 (502)
Q Consensus 239 ~~------~~~a~~~~~~~~fr~---~--~r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~ 303 (502)
+. -++|-.++.+++.|+ . |. ..-|.+||.+|.|. +.++.-|+-|+.+--.+-+=|..|.| |.
T Consensus 86 ~g~~~DViEiDaAs~~gVddIRel~e~v~~~P~~~~yKVyIIDEvhmLs-~~AfNALLKtLEEPP~~v~FILaTTe--~~ 162 (462)
T PRK06305 86 SGTSLDVIEIDGASHRGIEDIRQINETVLFTPSKSQYKIYIIDEVHMLT-KEAFNSLLKTLEEPPQHVKFFLATTE--IH 162 (462)
T ss_pred CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCC-HHHHHHHHHHHHCCCCCEEEEEEECC--HH
T ss_conf 3899986864355344668999999771008867750599981521179-99999999986189877499998188--14
Q ss_pred HHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 61363034576530211577515888999999999998864311689789899999985027888999999999999863
Q gi|254780627|r 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 (502)
Q Consensus 304 ~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~ 383 (502)
.+..-+.||.+ ..+..+-+.+.-..-|++- ++.+++.++++++++||+...|++|+=+..+.++.++.
T Consensus 163 ---KIp~TIlSRCQ---rf~F~~i~~~~I~~~L~~I-----~~~E~i~~e~~AL~lIA~~a~GsmRDAlslLDQ~i~~~- 230 (462)
T PRK06305 163 ---KIPGTILSRCQ---KMHLKRIPEETIIDKLALI-----AQQDGIETSREALLPIARAAQGSLRDAESLYDYVVGLF- 230 (462)
T ss_pred ---HCCHHHHHHHH---EEECCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-
T ss_conf ---28547876540---2332579999999999999-----99839985999999999985895878999999999847-
Q ss_pred HCCCCCHHHHHHHHH
Q ss_conf 024687788999998
Q gi|254780627|r 384 FAPILTAEIADELLS 398 (502)
Q Consensus 384 ~~~~~~~~~~~~~l~ 398 (502)
++.++.+.+.+.|+
T Consensus 231 -~~~it~~~V~~~lG 244 (462)
T PRK06305 231 -PKSLSPDTVAKALG 244 (462)
T ss_pred -CCCCCHHHHHHHHC
T ss_conf -99868999999868
No 57
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.80 E-value=1.6e-06 Score=66.34 Aligned_cols=200 Identities=22% Similarity=0.284 Sum_probs=121.0
Q ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHH---HHCCCCCCCCCCCCE--EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 576447887632886147899999999---824100136555554--898627888857999999999986306881686
Q gi|254780627|r 157 PLDSRFVFSTFIEGSSNRVALTAAQSI---AEVDSHGYTTVRLNP--LFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 (502)
Q Consensus 157 ~LNpryTFDnFVVG~sN~lA~aAAkaV---Ae~pg~~~~~~~~NP--Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y 231 (502)
..-+.-|||.-| |. +.|-.+|+-+ .++|-.-. .|-| .+.||++|.||||+..|++|+... -.+.
T Consensus 113 e~~~~it~ddVi-Gq--EeAK~kcrli~~yLenPe~Fg---~WAPknVLFyGppGTGKTm~Akalane~kv-----p~l~ 181 (368)
T COG1223 113 EIISDITLDDVI-GQ--EEAKRKCRLIMEYLENPERFG---DWAPKNVLFYGPPGTGKTMMAKALANEAKV-----PLLL 181 (368)
T ss_pred HHHCCCCHHHHH-CH--HHHHHHHHHHHHHHHCHHHHC---CCCCCEEEEECCCCCCHHHHHHHHHCCCCC-----CEEE
T ss_conf 661366176641-63--988888799999964968763---457541687789996487999987254578-----5487
Q ss_pred EEHHHHHHHHHHHHHCCCHHHHHHHHH--HCCHHHHHHHHHHC---------CC-C-HHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 469888999999986198899999974--03102054444531---------75-0-69999999999885698799964
Q gi|254780627|r 232 LTAEYFMWRFASAIRDNCALNLKDSLR--NIDLLLIDDMQFLQ---------GK-L-IQHEFCHLLNSLLDSAKQVVAAA 298 (502)
Q Consensus 232 ~~~e~F~~~~~~a~~~~~~~~fr~~~r--~~DvLliDDiqfl~---------gk-~-tqee~f~~~n~l~~~gkqiv~ts 298 (502)
+.|-+..-++|--- .+.+-+.-++-| .--+..||.+.-++ |. . .-+-|+.-+|-+.++.+-+-+++
T Consensus 182 vkat~liGehVGdg-ar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 182 VKATELIGEHVGDG-ARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred ECHHHHHHHHHHHH-HHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 11688888774359-89999999988751984998400245553045788645499999999985017445775699950
Q ss_pred CCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC-CHHHHHHHHHH
Q ss_conf 87567613630345765302115775158889999999999988643116897898999999850278-88999999999
Q gi|254780627|r 299 DRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT-SGRELDGAFNQ 377 (502)
Q Consensus 299 d~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~-~vR~Legal~~ 377 (502)
...|. -|++-.+|||+-- .+-.-|+.|.|+.||+..++ ...+++.-+ ++++|....+ |-|++.--+.+
T Consensus 261 TN~p~---~LD~aiRsRFEeE--IEF~LP~~eEr~~ile~y~k-----~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK 329 (368)
T COG1223 261 TNRPE---LLDPAIRSRFEEE--IEFKLPNDEERLEILEYYAK-----KFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLK 329 (368)
T ss_pred CCCHH---HCCHHHHHHHHHE--EEEECCCHHHHHHHHHHHHH-----HCCCCCCCC-HHHHHHHHCCCCCHHHHHHHHH
T ss_conf 59846---5078888655650--65648885899999999898-----589765568-9999998478772068999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780627|r 378 LV 379 (502)
Q Consensus 378 l~ 379 (502)
-.
T Consensus 330 ~a 331 (368)
T COG1223 330 TA 331 (368)
T ss_pred HH
T ss_conf 99
No 58
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.80 E-value=4.3e-06 Score=63.34 Aligned_cols=283 Identities=15% Similarity=0.187 Sum_probs=149.7
Q ss_pred CCCCCHHHH--HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH
Q ss_conf 288614789--999999982410013655555489862788885799999999998630688168646988899999998
Q gi|254780627|r 168 IEGSSNRVA--LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 (502)
Q Consensus 168 VVG~sN~lA--~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~ 245 (502)
++|.|-.|= +.-+..+|..+ .|++|.|.+|.||..+-++|-+.- .+.+...+-+.+..+..+.+.+.
T Consensus 140 liG~S~~m~~v~~~i~~~a~~~---------~pVLI~GE~GTGK~~~Ar~IH~~S--~r~~~pfi~vnC~~~~~~~~e~e 208 (469)
T PRK10923 140 IIGEAPAMQDVFRIIGRLSRSS---------ISVLINGESGTGKELVAHALHRHS--PRAKAPFIALNMAAIPKDLIESE 208 (469)
T ss_pred CEECCHHHHHHHHHHHHHHCCC---------CCEEEECCCCCCHHHHHHHHHHCC--CCCCCCCEEEECCCCCHHHHHHH
T ss_conf 5468999999999999985889---------978998989826999999999748--87799957876788997789999
Q ss_pred ----HCCC---HHHHH-HHH--HHCCHHHHHHHHHHCCCCHHHHHHHHHHHH--H--------HCCCEEEEECCCCHHHH
Q ss_conf ----6198---89999-997--403102054444531750699999999998--8--------56987999648756761
Q gi|254780627|r 246 ----RDNC---ALNLK-DSL--RNIDLLLIDDMQFLQGKLIQHEFCHLLNSL--L--------DSAKQVVAAADRPPSEL 305 (502)
Q Consensus 246 ----~~~~---~~~fr-~~~--r~~DvLliDDiqfl~gk~tqee~f~~~n~l--~--------~~gkqiv~tsd~~P~~l 305 (502)
..+. ...++ -++ -+-..|.+|.|+.|. ...|..|...++.- . ..+-+||.+|.+.+.++
T Consensus 209 LFG~~~gaf~ga~~~~~g~~e~a~~GTLfLdeI~~L~-~~~Q~kLl~~L~~~~~~~~g~~~~~~~d~RiIaat~~~L~~~ 287 (469)
T PRK10923 209 LFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP-LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQR 287 (469)
T ss_pred HHCCCCCCCCCCCCCCCCCHHHCCCCCEEHHHHHHCC-HHHHHHHHHHHHCCCEEECCCCCEEEECCEEEEECCCCHHHH
T ss_conf 7087667878864245873664389926566366489-999999999985593785799851221437997078799998
Q ss_pred ---CCCCHHHHHHHHCCEEEEECCCCHHHHHH----HHHHHHHHHHHHC--CCCCCCHHHHHHH-HHHCCCCHHHHHHHH
Q ss_conf ---36303457653021157751588899999----9999998864311--6897898999999-850278889999999
Q gi|254780627|r 306 ---ESLDPRIRSRLQGGVSVPLGLHDYEMRFS----ILKNRLAISQKED--PKLNINEEVLMHV-ARTVTTSGRELDGAF 375 (502)
Q Consensus 306 ---~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~----Il~~k~~~~~~~~--~~~~l~~~v~~~l-a~~~~~~vR~Legal 375 (502)
..|.+.|.-|++. ..|.-|-+-.|.. +++.-+.....+. .-..++++++..| +-...||||||+-.+
T Consensus 288 v~~g~Fr~dLyyrL~~---~~I~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~n~i 364 (469)
T PRK10923 288 VQEGKFREDLFHRLNV---IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 (469)
T ss_pred HHHCCHHHHHHHHHHH---HCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 6608177999986442---4015846544653499999999999999859997878999999997499998799999999
Q ss_pred HHHHHHHHHCCCCCHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC----CCHHHHHCCCCCHHHCHHHHHHHHH--
Q ss_conf 9999986302468778-89999987630378875798999999999809----9999940888774014457999999--
Q gi|254780627|r 376 NQLVFRHSFAPILTAE-IADELLSHLVNTGETKKMRIEDIQRMVAKHYN----ISRNDLLSNRRVRTVVRPRQVAMYL-- 448 (502)
Q Consensus 376 ~~l~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~i~~~~I~~~V~~~~~----i~~~~l~s~~R~~~i~~~RqiamyL-- 448 (502)
.++...+. +..++.+ +..++...... .......++......+.++. -...++.+. +.+..=-.|+
T Consensus 365 er~~~~~~-~~~i~~~dl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~l~~~Er~~I~~ 436 (469)
T PRK10923 365 RWLTVMAA-GQEVLIQDLPGELFESTVP-DSTSQMQPDSWATLLAQWADRALRSGHQNLLSE------AQPELERTLLTT 436 (469)
T ss_pred HHHHHHCC-CCCCCHHHCCHHHHHCCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHH------HHHHHHHHHHHH
T ss_conf 99998579-9825477572988633377-765455774034442110011111342015899------999999999999
Q ss_pred HHHHCCCCHHHHHHHHCCCCHHHHHH
Q ss_conf 99851568789998847984379999
Q gi|254780627|r 449 SKIMTPRSFPEIGRRFGDRDHTTVLH 474 (502)
Q Consensus 449 ~r~~t~~s~~~IG~~fg~rdHsTV~~ 474 (502)
+=+.++..-++..+..| =+-+|.-.
T Consensus 437 aL~~~~gn~~~aA~~LG-isR~TLyr 461 (469)
T PRK10923 437 ALRHTQGHKQEAARLLG-WGRNTLTR 461 (469)
T ss_pred HHHHHCCCHHHHHHHHC-CCHHHHHH
T ss_conf 99990998999999989-89999999
No 59
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.78 E-value=2.3e-06 Score=65.19 Aligned_cols=190 Identities=19% Similarity=0.147 Sum_probs=114.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHH-HHCCHHHHHHHH-HHCCC--
Q ss_conf 89862788885799999999998630688168646988899999998619889999997-403102054444-53175--
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL-RNIDLLLIDDMQ-FLQGK-- 274 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~-r~~DvLliDDiq-fl~gk-- 274 (502)
+.+||++|.|||.+..||+++. +...+.++.-.+++.|+-.--.+--+.|+.-- -.--||-||.|. .++|.
T Consensus 262 vLL~GpPG~GKtl~AKAvA~e~-----~~p~l~l~~~~l~~~~vGesE~~~r~~f~~A~~~aP~ilfiDEidk~~~~~~~ 336 (491)
T CHL00195 262 LLLVGIQGTGKSLTAKAIANEW-----NLPLLRLDVGKLFGGIVGESESRMRQMIQLAETISPCILWIDEIDKAFSGLDS 336 (491)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-----CCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHCCCCCC
T ss_conf 9997999987899999998663-----89469966799756006704999999999998619858997465454258888
Q ss_pred ----CHHHHHHHHHHHHHHC-CCEE-EEECCCCHHHHCCCCHHHHH--HHHCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf ----0699999999998856-9879-99648756761363034576--53021157751588899999999999886431
Q gi|254780627|r 275 ----LIQHEFCHLLNSLLDS-AKQV-VAAADRPPSELESLDPRIRS--RLQGGVSVPLGLHDYEMRFSILKNRLAISQKE 346 (502)
Q Consensus 275 ----~tqee~f~~~n~l~~~-gkqi-v~tsd~~P~~l~~l~~rL~S--R~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~ 346 (502)
.+....|.+|-...+. .+.| |+++-..| ..|++.|.= ||.- ..-+..||.+.|.+|++..+...
T Consensus 337 ~~d~g~s~rv~~~~Lt~m~e~~~~VfViattN~~---~~L~pellR~GRFD~--~~~v~lP~~~~R~~I~~ihl~~~--- 408 (491)
T CHL00195 337 KGDSGTSNRVLATFITWLSEKKSPVFVVATANNI---DSLPLELLRKGRFDE--IFFLDLPNLEERELIFKIHLKRF--- 408 (491)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCC---CCCCHHHCCCCCCCE--EEECCCCCHHHHHHHHHHHHHCC---
T ss_conf 8887232899999999864689976999958997---558987708987770--47648959899999999998544---
Q ss_pred CCCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHC
Q ss_conf 16897898999999850278-88999999999999863-0246877889999987630
Q gi|254780627|r 347 DPKLNINEEVLMHVARTVTT-SGRELDGAFNQLVFRHS-FAPILTAEIADELLSHLVN 402 (502)
Q Consensus 347 ~~~~~l~~~v~~~la~~~~~-~vR~Legal~~l~~~~~-~~~~~~~~~~~~~l~~~~~ 402 (502)
......+--++.||....+ +-.|||.++..-...+- -++.++.+....++++++.
T Consensus 409 -~~~~~~~~d~~~la~~t~gfsGAeIe~~v~~A~~~A~~~~r~~~~~dl~~a~~~~~P 465 (491)
T CHL00195 409 -RPNSWQNYDIEILSQLTNKFSGAEIEQSIIEAMHHAFSEKREFTTEDICLALKQLIP 465 (491)
T ss_pred -CCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf -788755469999997685988899999999999999875886658999999981788
No 60
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=4.3e-07 Score=70.44 Aligned_cols=211 Identities=17% Similarity=0.121 Sum_probs=128.0
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-CEEEEEHHHH---H
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630688-1686469888---9
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL-RVVYLTAEYF---M 238 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~-~v~y~~~e~F---~ 238 (502)
+|+.-| |.. ...-+-..+|.. |+.. .-...+|+.|+|||-+..++|.++.-.++.. .-.|-++..- .
T Consensus 16 ~F~EVI-GQe-~Vv~tL~nAI~~--gRIa-----HAYLF~GPRGvGKTT~ARIfAKaLNC~~~~d~~~pC~~C~~~~~~s 86 (718)
T PRK07133 16 KFDEIK-GQD-HIIETLKNIIKS--GKIS-----HAYLFSGPHGTGKTSVAKIFANALNCSHKTDLIEPCQNCIENFNNN 86 (718)
T ss_pred CHHHHC-CCH-HHHHHHHHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCC
T ss_conf 754422-859-999999999974--9975-----0586238998688999999999967999999999770214304789
Q ss_pred HHH--HHHHHCCCHHHHHHHHH---------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCC
Q ss_conf 999--99986198899999974---------0310205444453175069999999999885698799964875676136
Q gi|254780627|r 239 WRF--ASAIRDNCALNLKDSLR---------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 (502)
Q Consensus 239 ~~~--~~a~~~~~~~~fr~~~r---------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~ 307 (502)
-++ ++|..++.+++.|+-.. ..-|.+||.+|.|. +.+..-|+-|+.+--.+-.=|..|.+ |. .
T Consensus 87 ~DViEIDAASn~gVDdIReLie~v~y~P~~gkYKVyIIDEvHMLS-~~AfNALLKtLEEPP~hvvFILaTTe--p~---K 160 (718)
T PRK07133 87 LDIIEMDAASNNGVDEIRELRENVKNLPQISKYKIYIIDEVHMLS-KSAFNALLKTLEEPPKHVIFILATTD--VQ---K 160 (718)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC-HHHHHHHHHHHCCCCCCCEEEEEECC--HH---H
T ss_conf 873775455668889999999982558877872499996620079-99999999850279878279997088--25---4
Q ss_pred CCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 30345765302115775158889999999999988643116897898999999850278889999999999998630246
Q gi|254780627|r 308 LDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 (502)
Q Consensus 308 l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~ 387 (502)
+.+-+.||++.=---.|...+.-.|+. .- +..+++.+++++++.||....|++|+-.+.|.++.+++ ++.
T Consensus 161 IP~TIlSRCQrFdFkrI~~~~I~~~L~---~I-----~~kE~I~~e~eAL~lIA~~a~GSmRDAlSlLDQv~~f~--ng~ 230 (718)
T PRK07133 161 IPLTILSRVQRFNFRRISEDVIVHQLE---NI-----LEKEKIKYEKNALKLIASLASGSLRDALSIADQVSIFG--NGN 230 (718)
T ss_pred CCHHHHHCCEEEECCCCCHHHHHHHHH---HH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--CCC
T ss_conf 848774122033588899999999999---99-----99859977899999999976884888987999999854--898
Q ss_pred CCHHHHHHHHH
Q ss_conf 87788999998
Q gi|254780627|r 388 LTAEIADELLS 398 (502)
Q Consensus 388 ~~~~~~~~~l~ 398 (502)
+|..-+.++++
T Consensus 231 it~k~v~~~~G 241 (718)
T PRK07133 231 ITLKNVNELFG 241 (718)
T ss_pred CCHHHHHHHHC
T ss_conf 72999999967
No 61
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=1.4e-06 Score=66.82 Aligned_cols=213 Identities=16% Similarity=0.199 Sum_probs=133.4
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH-----CCCCCE--EEEEHH
Q ss_conf 8876328861478999999998241001365555548986278888579999999999863-----068816--864698
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR-----QPNLRV--VYLTAE 235 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~-----~~~~~v--~y~~~e 235 (502)
+|+..| |.. .++-+-..++.. |+.. +-+..+|+.|+|||-..+.++..+--. .|...- .|-++.
T Consensus 19 ~f~~li-GQ~-~~~~~l~n~i~~--~~~~-----~aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~~~~~~c~~c~~c~ 89 (507)
T PRK06645 19 NFAELQ-GQE-VLVKVLSYTILN--DRLA-----GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEKCTNCI 89 (507)
T ss_pred CHHHHC-CCH-HHHHHHHHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 765623-939-999999999973--9966-----3477458799788999999999967999888899888888876789
Q ss_pred HHHHH----H--HHHHHCCCHHHHHHH-----HH----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 88999----9--999861988999999-----74----031020544445317506999999999988569879996487
Q gi|254780627|r 236 YFMWR----F--ASAIRDNCALNLKDS-----LR----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR 300 (502)
Q Consensus 236 ~F~~~----~--~~a~~~~~~~~fr~~-----~r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~ 300 (502)
.+.+. + ++|..++.+++-|+- |. ..-|.+||.+|.|+ +.++.-|.-|+..--.+-+=|..|.+
T Consensus 90 ~i~~~~~~dv~EiDaas~~gv~~ir~l~~~~~~~p~~~~~kv~iidE~hmls-~~a~nallktlEepp~~~~Fi~atte- 167 (507)
T PRK06645 90 SFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS-KGAFNALLKTLEEPPPHIIFIFATTE- 167 (507)
T ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHCC-HHHHHHHHHHHHCCCCCEEEEEECCC-
T ss_conf 9865899985996378888889999998635517876743589952142248-99999999974278644389997485-
Q ss_pred CHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 56761363034576530211577515888999999999998864311689789899999985027888999999999999
Q gi|254780627|r 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 (502)
Q Consensus 301 ~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~ 380 (502)
|. .+..-..||++. .+..+-+.+.-..-|+.- +..+++.++++++.+||....|++|+=...|.+..+
T Consensus 168 -~~---kip~ti~srcq~---f~~~~i~~~~i~~~l~~i-----~~~E~~~~~~~al~~ia~~a~Gs~RDalslldqai~ 235 (507)
T PRK06645 168 -VQ---KIPATIISRCQR---YDLRRLSFEEIFKLLEYI-----TKQENLKADIEALRIIAYKSEGSARDAVSILDQAAS 235 (507)
T ss_pred -HH---HCCHHHHHHCEE---EEEECCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf -36---483788854327---875459979999999999-----997687777899999998559986789999999999
Q ss_pred HHHH-CCCCCHHHHHHHHH
Q ss_conf 8630-24687788999998
Q gi|254780627|r 381 RHSF-APILTAEIADELLS 398 (502)
Q Consensus 381 ~~~~-~~~~~~~~~~~~l~ 398 (502)
++.- ++.++.+.+++.|+
T Consensus 236 ~~~~~~~~I~~~~V~~MLG 254 (507)
T PRK06645 236 MSAKSDNIISPQVINQMLG 254 (507)
T ss_pred HHCCCCCCCCHHHHHHHHC
T ss_conf 7548987026999999838
No 62
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=98.75 E-value=1e-06 Score=67.80 Aligned_cols=212 Identities=16% Similarity=0.138 Sum_probs=120.1
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCC--EEEEEHHHHHH
Q ss_conf 887632886147899999999824100136555554898627888857999999999986306-881--68646988899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP-NLR--VVYLTAEYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~-~~~--v~y~~~e~F~~ 239 (502)
+|+..| |-..-.. .--.++.. |+.. .-+..+|+.|+|||-+..+.+..+.-.++ +.. -.|-++..+.+
T Consensus 13 ~F~dvv-GQe~i~~-~L~nal~~--~ri~-----HAyLF~GP~GtGKts~ArifAkaLnC~~~~~~~pC~~C~~C~~i~~ 83 (557)
T PRK07270 13 TFDEMV-GQEVVAT-TLKQAVES--GKIS-----HAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNNCDICRDITN 83 (557)
T ss_pred CHHHHC-CHHHHHH-HHHHHHHC--CCCC-----EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 876714-8199999-99999985--9954-----0442108998689999999999957999899998887779999875
Q ss_pred H------HHHHHHCCCHHHHHH---H--HH----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 9------999986198899999---9--74----0310205444453175069999999999885698799964875676
Q gi|254780627|r 240 R------FASAIRDNCALNLKD---S--LR----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 240 ~------~~~a~~~~~~~~fr~---~--~r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
. -+.+-.++.+++.|+ + |. ..-|.+||++|.+. ...+.-|+-|+.+=-.+-.=|++|++ |.
T Consensus 84 g~~~DviEidaas~~gVd~IRei~~~~~~~P~~~~yKV~IIDEah~Ls-~~A~NALLKtLEEPP~~~vFIL~Tte--p~- 159 (557)
T PRK07270 84 GSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKVYIIDEVHMLS-TGAFNALLKTLEEPTENVVFILATTE--LH- 159 (557)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCC-HHHHHHHHHHHHCCCCCEEEEEEECC--HH-
T ss_conf 899974873477767889999999984238777883899971445349-99999899985289987699998499--47-
Q ss_pred HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
.+.+-++||.+- .+..+-+.+.-..-|+.- ++.+++.++++++.+||....|++|+-.+.|.++.++..
T Consensus 160 --kIl~TI~SRCQr---f~F~~i~~~~i~~~L~~I-----~~~E~i~~~~~aL~~Ia~~a~G~mRdAlsiLdQ~~s~~~- 228 (557)
T PRK07270 160 --KIPATILSRVQR---FEFKSIKTKAIREHLAWI-----LDKEGISFEVEALNLIARRAEGGMRDALSILDQALSLSQ- 228 (557)
T ss_pred --HCCHHHHHHHHH---CCCCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-
T ss_conf --592888743000---108889999999999999-----998399869999999999779968789999999997179-
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24687788999998
Q gi|254780627|r 385 APILTAEIADELLS 398 (502)
Q Consensus 385 ~~~~~~~~~~~~l~ 398 (502)
++.++.+.+.++++
T Consensus 229 ~~~it~~~v~~~~G 242 (557)
T PRK07270 229 DNQVTIAIAEEITG 242 (557)
T ss_pred CCCCCHHHHHHHHC
T ss_conf 99767999999968
No 63
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=98.74 E-value=6.2e-07 Score=69.29 Aligned_cols=211 Identities=16% Similarity=0.162 Sum_probs=122.8
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC-CCE--EEEEHHHHHH
Q ss_conf 8876328861478999999998241001365555548986278888579999999999863068-816--8646988899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN-LRV--VYLTAEYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~-~~v--~y~~~e~F~~ 239 (502)
||+..| |.. ...-+--.+|.. |+.. .-+..+|+.|+|||-+-...+..+.-.++. ..- .|-++-...+
T Consensus 14 ~F~dvv-GQ~-~v~~~L~nai~~--~ri~-----HAyLF~GprGtGKts~Ari~AkaLnC~~~~~~~pC~~C~~C~~i~~ 84 (563)
T PRK06674 14 KFEDVV-GQE-HVTKTLQNALLQ--EKVS-----HAYLFSGPRGTGKTSIAKVFAKAVNCEHAPVAEPCNECPSCLGITN 84 (563)
T ss_pred CHHHHC-CHH-HHHHHHHHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 765524-809-999999999984--9965-----0343128998689999999999857999999887766878999855
Q ss_pred ----H--HHHHHHCCCHHHHHH---HHH------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf ----9--999986198899999---974------0310205444453175069999999999885698799964875676
Q gi|254780627|r 240 ----R--FASAIRDNCALNLKD---SLR------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 240 ----~--~~~a~~~~~~~~fr~---~~r------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
+ -++|-.++.+++.|+ +.+ ..-|.+||++|.+. +..+.-|+-|+.+=-.+-.=|..|++ |.
T Consensus 85 g~~~DviEiDaasn~gVd~IR~i~~~v~~~P~~~~yKV~IIDeah~Lt-~~A~NALLKtLEEPP~~viFILaTte--p~- 160 (563)
T PRK06674 85 GSISDVLEIDAASNNGVDEIRDIRDKVKFAPSAVEYKVYIIDEVHMLS-IGAFNALLKTLEEPPGHVIFILATTE--PH- 160 (563)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCC-HHHHHHHHHHHHCCCCCEEEEEECCC--HH-
T ss_conf 899877985255557879999999982648867873799985456379-99999999986388756499996599--47-
Q ss_pred HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
.+.+-++||++. .+..+-+.+.-..-|+.- ++.+++.++++++.+||....|++|+=.+.|.++.++.
T Consensus 161 --ki~~TI~SRCQr---f~F~ri~~~~i~~rL~~I-----~~~E~i~~~~~aL~~Ia~~a~GsmRDAlsiLdQ~~s~~-- 228 (563)
T PRK06674 161 --KIPPTIISRCQR---FDFRRISVNDIVERLSTV-----VTNEGTQVEDEALQIIARAADGGMRDALSLLDQAISFS-- 228 (563)
T ss_pred --HCCHHHHHHHEE---EECCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--
T ss_conf --584788733103---127889999999999999-----99849998788999999976997889999999999715--
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24687788999998
Q gi|254780627|r 385 APILTAEIADELLS 398 (502)
Q Consensus 385 ~~~~~~~~~~~~l~ 398 (502)
++.++.+.+.++++
T Consensus 229 ~~~i~~~~v~~~lG 242 (563)
T PRK06674 229 DERVTTEDVLAVTG 242 (563)
T ss_pred CCCCCHHHHHHHHC
T ss_conf 99768999999868
No 64
>PRK06672 hypothetical protein; Validated
Probab=98.74 E-value=3.7e-08 Score=78.00 Aligned_cols=73 Identities=12% Similarity=0.264 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHCCHHHHHHHCCCEEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 99999999986697889743024057885399898983898999999998999999999986277665078972
Q gi|254780627|r 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR 112 (502)
Q Consensus 39 W~~il~~Lk~~l~~~~F~tWi~pL~~i~~e~~~L~L~vPn~FikdwIe~~Y~~~I~~al~~~~g~~~~I~i~i~ 112 (502)
|+++...|+-.+.+..|-+|++.... .++++.|+|.+.+.|.++-++..|...|....+....+...+=|.+.
T Consensus 95 wdevkkalrpk~~ekt~~twirntna-ti~dn~~ii~cedafhrdllegeykniisstvq~~t~eeyqiwfei~ 167 (341)
T PRK06672 95 WDEVKKALRPKIAEKTFMTWIRNTNA-TIKDNKVIIFCEDAFHRDLLEGEYKNIISSTVQKITDEEYQIWFEIG 167 (341)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHCCCC-EECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEC
T ss_conf 88999874701445668788654785-01177389996336667775017777889999861251234778834
No 65
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.74 E-value=7.8e-07 Score=68.57 Aligned_cols=211 Identities=16% Similarity=0.162 Sum_probs=124.7
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEE---EEEHHHHHH
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630688168---646988899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV---YLTAEYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~---y~~~e~F~~ 239 (502)
+|+.-| |..- ...+-++..++ |+.. +.+..+|+.|+|||-....++..+.-.++...-- |-++....+
T Consensus 14 ~f~dvv-gQ~~--v~~~L~n~i~~-~~i~-----hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~~i~~ 84 (541)
T PRK05563 14 TFEDVV-GQEH--ITTTLKNQIIN-NRIA-----HAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICKKINE 84 (541)
T ss_pred CHHHHC-CCHH--HHHHHHHHHHC-CCCC-----EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 776624-8499--99999999984-9932-----0453038799589999999999957999888985751488999856
Q ss_pred H----H--HHHHHCCCHHHHHH---HHH------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 9----9--99986198899999---974------0310205444453175069999999999885698799964875676
Q gi|254780627|r 240 R----F--ASAIRDNCALNLKD---SLR------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 240 ~----~--~~a~~~~~~~~fr~---~~r------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
. + ++|-.++.+++-|+ +.+ ..-|.+||.+|.|+ +.++..|.-|+..=-.+-.=|..|.+ |.
T Consensus 85 g~~~Dv~Eidaas~~gvd~iR~~~~~~~~~p~~~~~Kv~IiDEvhmls-~~a~nallKtlEePp~~~~Filatte--~~- 160 (541)
T PRK05563 85 GLLMDVIEIDAASNNGVDDIREIIENVKYPPQEGKYKVYIMDEVHMLS-QGAVNAFLKTLEEPPSNVIFILATTD--PQ- 160 (541)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHCEECCCCCCEEEEEEECCCCCC-HHHHHHHHHHHHCCCCCCEEEEECCC--CC-
T ss_conf 898873662444447889999999761048767870599997723389-99999999998548777569997698--44-
Q ss_pred HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
.+..-+.||.+ ..+..+.+.+.-..-|+.- ++.+++.++++++..||....|++|+=.+.|.++.++.
T Consensus 161 --ki~~tI~SRcq---~f~f~~i~~~~i~~~L~~I-----~~~E~i~~~~~al~lIa~~s~GsmRDAlslLdQ~is~~-- 228 (541)
T PRK05563 161 --KLPITILSRCQ---RFDFKRIKVKDIFKRLRKI-----VEEQGIFADDKSLNLIARMSDGAMRDALSILDQAISMG-- 228 (541)
T ss_pred --CCCHHHHHHEE---EEEEEECCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--
T ss_conf --27455674213---5775438999999999999-----99849998789999999745997788999999999835--
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24687788999998
Q gi|254780627|r 385 APILTAEIADELLS 398 (502)
Q Consensus 385 ~~~~~~~~~~~~l~ 398 (502)
++.++.+.+.++|+
T Consensus 229 ~~~it~~~v~~~lG 242 (541)
T PRK05563 229 DGKVDYDDVVSMLG 242 (541)
T ss_pred CCCCCHHHHHHHHC
T ss_conf 99866999999968
No 66
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.72 E-value=5e-07 Score=69.94 Aligned_cols=201 Identities=16% Similarity=0.168 Sum_probs=122.9
Q ss_pred HHCCCCCHHHH--HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHH
Q ss_conf 63288614789--9999999824100136555554898627888857999999999986306881686469888999999
Q gi|254780627|r 166 TFIEGSSNRVA--LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFAS 243 (502)
Q Consensus 166 nFVVG~sN~lA--~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~ 243 (502)
+=+||.|-.|- +.-+..+|..+ .|++|.|.+|+||+.+-++|-.. - .+.....+.+.+..+..+.+.
T Consensus 6 ~~liG~S~~m~~v~~~~~~~A~~~---------~pVLI~GE~GtGK~~~Ar~IH~~-S-~r~~~pfi~v~C~~l~~~~~e 74 (325)
T PRK11608 6 DNLLGEANSFLEVLEQVSHLAPLD---------KPVLIIGERGTGKELIASRLHYL-S-SRWQGPFISLNCAALNENLLD 74 (325)
T ss_pred CCCEECCHHHHHHHHHHHHHHCCC---------CCEEEECCCCCCHHHHHHHHHHC-C-CCCCCCCEEEECCCCCHHHHH
T ss_conf 998589999999999999996889---------99898898983799999999965-8-867999778877989977889
Q ss_pred HHHCC-CHHHH-------HHHHH--HCCHHHHHHHHHHCCCCHHHHHHHHHHH--HH--------HCCCEEEEECCCCHH
Q ss_conf 98619-88999-------99974--0310205444453175069999999999--88--------569879996487567
Q gi|254780627|r 244 AIRDN-CALNL-------KDSLR--NIDLLLIDDMQFLQGKLIQHEFCHLLNS--LL--------DSAKQVVAAADRPPS 303 (502)
Q Consensus 244 a~~~~-~~~~f-------r~~~r--~~DvLliDDiqfl~gk~tqee~f~~~n~--l~--------~~gkqiv~tsd~~P~ 303 (502)
+.--+ ....| .-.+. +-.-|++|+|+.+. ...|+.|+..+.. +. ..+-+||.+|.+.+.
T Consensus 75 ~~LFG~~~g~~~~~~~~~~g~le~a~gGTL~L~eI~~l~-~~~Q~~Ll~~l~~~~~~r~g~~~~~~~~~RiIa~t~~~l~ 153 (325)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAP-MLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLP 153 (325)
T ss_pred HHHCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECHHHCC-HHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEECCCHHHH
T ss_conf 987277556767753246873435689869973745479-9999999999864908857998766564688713322089
Q ss_pred HHC---CCCHHHHHHHHCCEEEEECCCCHHHHHH----HHHHHHHHHHHHCCCC----CCCHHHHHHH-HHHCCCCHHHH
Q ss_conf 613---6303457653021157751588899999----9999998864311689----7898999999-85027888999
Q gi|254780627|r 304 ELE---SLDPRIRSRLQGGVSVPLGLHDYEMRFS----ILKNRLAISQKEDPKL----NINEEVLMHV-ARTVTTSGREL 371 (502)
Q Consensus 304 ~l~---~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~----Il~~k~~~~~~~~~~~----~l~~~v~~~l-a~~~~~~vR~L 371 (502)
++- .|.+.|..||+ ++.|.-|-+-.|.. +++.-+.. .+...+. .+++++++.| +-...||||||
T Consensus 154 ~lv~~g~fr~dLy~rL~---~~~I~lPpLReR~eDI~~L~~~fl~~-~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL 229 (325)
T PRK11608 154 AMVNEGTFRADLLDRLA---FDVVQLPPLRERQSDIMLMAEHFAIQ-MCRELGLPLFPGFTERARETLLNYRWPGNIREL 229 (325)
T ss_pred HHHHHCCCHHHHHHHHH---HHHCCCCCHHHCCCCHHHHHHHHHHH-HHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHH
T ss_conf 99983956799985653---01115868454710199999999999-999829998888899999999619999659999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999986
Q gi|254780627|r 372 DGAFNQLVFRH 382 (502)
Q Consensus 372 egal~~l~~~~ 382 (502)
+..+-+.+..+
T Consensus 230 ~n~ierav~~~ 240 (325)
T PRK11608 230 KNVVERSVYRH 240 (325)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999856
No 67
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.72 E-value=1.4e-07 Score=73.87 Aligned_cols=127 Identities=23% Similarity=0.329 Sum_probs=82.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHC--CC---H-HHHHHHHHHCCHHHHHHHHH
Q ss_conf 548986278888579999999999863068816864698889999999861--98---8-99999974031020544445
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD--NC---A-LNLKDSLRNIDLLLIDDMQF 270 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~--~~---~-~~fr~~~r~~DvLliDDiqf 270 (502)
.=||+|||+|.||||||-.--.. -|..+-.=++-..|+.+.-..+.. |. + ..-++-.+++.||++|-.+-
T Consensus 66 ~GlYl~GgVGrGKT~LMD~Fy~~----lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~V 141 (367)
T COG1485 66 RGLYLWGGVGRGKTMLMDLFYES----LPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFEV 141 (367)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH----CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEEEEE
T ss_conf 35888899786499999999865----87645665507799999999999971888865799999984178898630362
Q ss_pred HCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHH--CCCCH--------HHHHHHHCCEEEEECCC-CHHHH
Q ss_conf 3175-0699999999998856987999648756761--36303--------45765302115775158-88999
Q gi|254780627|r 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL--ESLDP--------RIRSRLQGGVSVPLGLH-DYEMR 332 (502)
Q Consensus 271 l~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l--~~l~~--------rL~SR~~~Gl~~~i~~P-d~e~r 332 (502)
.. .--.-+--.|++|..+|=.+|.||..+|.+| .||.- =|.++|. ++.++.| |+-.|
T Consensus 142 --tDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~---v~~vD~~~DYR~r 210 (367)
T COG1485 142 --TDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFE---VVNVDGPVDYRLR 210 (367)
T ss_pred --CCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHEE---EEEECCCCCCCCC
T ss_conf --37578899999999999779689995899967854460257763779999987547---9970587662356
No 68
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.7e-06 Score=66.25 Aligned_cols=162 Identities=21% Similarity=0.314 Sum_probs=103.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHH-HCCHHHHHHHHHHCCCC--
Q ss_conf 898627888857999999999986306881686469888999999986198899999974-03102054444531750--
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGKL-- 275 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r-~~DvLliDDiqfl~gk~-- 275 (502)
+.+||++|.|||.|-.|+|++. +..++-+..-+.++.++-..-++--..|..-.+ ..-++.+|.+..+..++
T Consensus 279 iLl~GpPGtGKT~lAkava~~~-----~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iifiDEiDs~~~~r~~ 353 (494)
T COG0464 279 VLLYGPPGTGKTLLAKAVALES-----RSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGP 353 (494)
T ss_pred EEEECCCCCCHHHHHHHHHHHC-----CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCC
T ss_conf 9998899975899999987544-----98248843355540776599999999999999669988974886667412899
Q ss_pred --------HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHH--HHHHCCEEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf --------69999999999885698799964875676136303457--65302115775158889999999999988643
Q gi|254780627|r 276 --------IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR--SRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 (502)
Q Consensus 276 --------tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~--SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~ 345 (502)
...+|...++-+-....-+|+.+...|..++ +-+. .||.. ...+.+||.+.|.+|++.-+.
T Consensus 354 ~~~~~~~rv~~~ll~~~d~~e~~~~v~vi~aTN~p~~ld---~a~lR~gRfd~--~i~v~~pd~~~r~~i~~~~~~---- 424 (494)
T COG0464 354 SEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLD---PALLRPGRFDR--LIYVPLPDLEERLEIFKIHLR---- 424 (494)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC---HHHHCCCCCEE--EEEECCCCHHHHHHHHHHHHC----
T ss_conf 876379999999999974754437648996479833268---75624366303--787179898999999999854----
Q ss_pred HCCCCC-CCHHHHHHHHHHCCC-CHHHHHHHH
Q ss_conf 116897-898999999850278-889999999
Q gi|254780627|r 346 EDPKLN-INEEVLMHVARTVTT-SGRELDGAF 375 (502)
Q Consensus 346 ~~~~~~-l~~~v~~~la~~~~~-~vR~Legal 375 (502)
..... ..+-.++.+|+...+ +-.+++..+
T Consensus 425 -~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~ 455 (494)
T COG0464 425 -DKKPPLAEDVDLEELAEITEGYSGADIAALV 455 (494)
T ss_pred -CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf -1565115564199999875277899999999
No 69
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.70 E-value=7.5e-06 Score=61.61 Aligned_cols=235 Identities=17% Similarity=0.259 Sum_probs=143.5
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHC-C----CCCEEEEEHHHHHHHH
Q ss_conf 3288614789999999982410013655555489862788885799999999998630-6----8816864698889999
Q gi|254780627|r 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ-P----NLRVVYLTAEYFMWRF 241 (502)
Q Consensus 167 FVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~-~----~~~v~y~~~e~F~~~~ 241 (502)
-|+|-..++- ++.+-.++- .-.||+ +-|.+|+|||-+..+++..+.+.. | +.+|+-+.--. +
T Consensus 187 PviGR~~Ei~-----r~i~iL~Rr---~KNNpi-LvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~Ldl~~----L 253 (758)
T PRK11034 187 PLIGREKELE-----RAIQVLCRR---RKNNPL-LVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS----L 253 (758)
T ss_pred CCCCCHHHHH-----HHHHHHHHH---CCCCCE-EECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHH----H
T ss_conf 8738489999-----999999763---258960-21699986999999999999738997655898899845877----8
Q ss_pred HHHHHCCCHHHHHHHH----------HHCCHHHHHHHHHHCCC-C---HHHHHHHHHHHHHHCCCEEEEECCCCHHHHC-
Q ss_conf 9998619889999997----------40310205444453175-0---6999999999988569879996487567613-
Q gi|254780627|r 242 ASAIRDNCALNLKDSL----------RNIDLLLIDDMQFLQGK-L---IQHEFCHLLNSLLDSAKQVVAAADRPPSELE- 306 (502)
Q Consensus 242 ~~a~~~~~~~~fr~~~----------r~~DvLliDDiqfl~gk-~---tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~- 306 (502)
+.+-+-+ -+|-+++ .++ +|-||+||.+-|- . .+.-.-+++.-...+|.--++.+-. +.+-.
T Consensus 254 iAGtkyR--GefEeRlk~vi~e~~~~~~~-ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~LarG~l~~IgaTT-~~EYrk 329 (758)
T PRK11034 254 LAGTKYR--GDFEKRFKALLKQLEQDTNS-ILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTT-YQEFSN 329 (758)
T ss_pred HCCCCCC--HHHHHHHHHHHHHHHHCCCE-EEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC-HHHHHH
T ss_conf 6168641--54999999999999857985-9998043442268876777646788745787469723999437-799875
Q ss_pred CC--CHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 63--0345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 307 SL--DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 307 ~l--~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
.+ +.-|.-||+ .+.|.+|+.|.-+.||+.- ........++.+++++++..+.-.. |.+. .++
T Consensus 330 ~iekD~AL~RRFq---~V~V~EPs~e~t~~IL~gl-~~~yE~~H~v~~~d~al~~av~Ls~-----------rYi~-dr~ 393 (758)
T PRK11034 330 IFEKDRALARRFQ---KIDITEPSIEETVQIINGL-KPKYEAHHDVRYTAKAVRAAVELAV-----------KYIN-DRH 393 (758)
T ss_pred CCCCCHHHHHCCC---EEECCCCCHHHHHHHHHHH-HHHHHHCCCCEECCHHHHHHHHHHH-----------HHHC-CCC
T ss_conf 0321478884282---6531899989999999989-9987323695774389999999997-----------6502-688
Q ss_pred CCCCCHHHHHHHHHHH--HC-CCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 2468778899999876--30-37887579899999999980999999408887
Q gi|254780627|r 385 APILTAEIADELLSHL--VN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 (502)
Q Consensus 385 ~~~~~~~~~~~~l~~~--~~-~~~~~~i~~~~I~~~V~~~~~i~~~~l~s~~R 434 (502)
...--+++..++-+.. .. ....+.++.++|...|++.-+|+...+....+
T Consensus 394 lPDKAIdllDea~a~~~l~~~~~~~~~v~~~di~~vv~~~t~ip~~~~~~~~~ 446 (758)
T PRK11034 394 LPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDR 446 (758)
T ss_pred CCHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 96199999999988875134566316589999999998750360767767799
No 70
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.66 E-value=2.9e-05 Score=57.43 Aligned_cols=254 Identities=19% Similarity=0.248 Sum_probs=148.5
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHC-C----CCCEEEEEHHHHHHHH
Q ss_conf 3288614789999999982410013655555489862788885799999999998630-6----8816864698889999
Q gi|254780627|r 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ-P----NLRVVYLTAEYFMWRF 241 (502)
Q Consensus 167 FVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~-~----~~~v~y~~~e~F~~~~ 241 (502)
-|+|-..++- ++.+-.++- .-.||+ +-|.+|+|||-+..+++..+.+.. | +++++-+..-. +
T Consensus 180 pvIGRd~EI~-----r~i~IL~RR---~KNNpi-LvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~----L 246 (823)
T CHL00095 180 PVIGRDKEIE-----RVIQILGRR---TKNNPI-LIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGL----L 246 (823)
T ss_pred CCCCCHHHHH-----HHHHHHHHH---CCCCCE-EECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHH----H
T ss_conf 8759569999-----999999773---248850-23799987999999999976088998687599368842887----7
Q ss_pred HHHHHCCCHHHHHHHHH---------HCCHHHHHHHHHHCCC-CH--HHHHHHHHHHHHHCCCEEEEECCCCHHHHCC-C
Q ss_conf 99986198899999974---------0310205444453175-06--9999999999885698799964875676136-3
Q gi|254780627|r 242 ASAIRDNCALNLKDSLR---------NIDLLLIDDMQFLQGK-LI--QHEFCHLLNSLLDSAKQVVAAADRPPSELES-L 308 (502)
Q Consensus 242 ~~a~~~~~~~~fr~~~r---------~~DvLliDDiqfl~gk-~t--qee~f~~~n~l~~~gkqiv~tsd~~P~~l~~-l 308 (502)
+.+-+-+ -+|-++.. .-=+|-||+||.+-|- .+ ..-..+++.-...+|.-=++.+ ..|.+-.. +
T Consensus 247 ~AGtkyR--GeFEeRlk~il~ei~~~~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLarGel~~IGA-TT~~EYrk~i 323 (823)
T CHL00095 247 LAGTKYR--GEFEERIKKIMDEIKKANNIILVIDEIHTLIGAGAAEGAIDAANILKPALARGKLQCIGA-TTLEEYRKHI 323 (823)
T ss_pred HHCCCCC--HHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE-CCHHHHHHHH
T ss_conf 5334222--679999999999998579869997351653288976664317887657864898669970-7889999985
Q ss_pred --CHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC---CCC-------HHHHHHHHH
Q ss_conf --03457653021157751588899999999999886431168978989999998502---788-------899999999
Q gi|254780627|r 309 --DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTV---TTS-------GRELDGAFN 376 (502)
Q Consensus 309 --~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~---~~~-------vR~Legal~ 376 (502)
+.-|.-||+ .+.|.+|+.|.-+.||+.. ........++.++++++...+.-. -.+ |--|.-|.-
T Consensus 324 EkD~AL~RRFq---~V~V~EPs~e~t~~IL~gl-~~~yE~~H~V~i~d~Ai~aav~LS~RYi~dr~LPDKAIDllDeA~A 399 (823)
T CHL00095 324 EKDPALERRFQ---PVYVGEPSVEETIEILLGL-RDRYEKHHNLSISDKALEAAAKLSDQYIKDRFLPDKAIDLLDEAGS 399 (823)
T ss_pred HCCHHHHHHCC---CCCCCCCCHHHHHHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 30588996268---4102899879999999999-9999875088504789999999877640377782178888999989
Q ss_pred H---------------------HHHHHH-HCCCCCHHHHHHHHH--------------HH----HCCCCCCCCCHHHHHH
Q ss_conf 9---------------------999863-024687788999998--------------76----3037887579899999
Q gi|254780627|r 377 Q---------------------LVFRHS-FAPILTAEIADELLS--------------HL----VNTGETKKMRIEDIQR 416 (502)
Q Consensus 377 ~---------------------l~~~~~-~~~~~~~~~~~~~l~--------------~~----~~~~~~~~i~~~~I~~ 416 (502)
+ +..... ....-+.+.+.+... .. ........++.++|..
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dI~~ 479 (823)
T CHL00095 400 RVRLINKQLPPAARELDKELRHILKDKDEAIRSQDFETAKQLRDREMEVRTQIAAMKQSKKTEEELQKEVPVVTEKDIAE 479 (823)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 99987325867899999999999999999996744999999998899999999999999874044323677207999999
Q ss_pred HHHHHHCCCHHHHHCCCCCHHHCH
Q ss_conf 999980999999408887740144
Q gi|254780627|r 417 MVAKHYNISRNDLLSNRRVRTVVR 440 (502)
Q Consensus 417 ~V~~~~~i~~~~l~s~~R~~~i~~ 440 (502)
+|++..||+...+....+.+-...
T Consensus 480 vvs~~tgiPv~~~~~~e~~~l~~l 503 (823)
T CHL00095 480 IVSAWTGIPVNKLTKSESEKLIHM 503 (823)
T ss_pred HHHHHHCCCHHHHCCCHHHHHHHH
T ss_conf 999986898476334588999878
No 71
>KOG0740 consensus
Probab=98.65 E-value=7.5e-07 Score=68.70 Aligned_cols=152 Identities=21% Similarity=0.291 Sum_probs=108.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCH-HHHH-HHHHHCCHHHHHHHHHHCC---
Q ss_conf 8986278888579999999999863068816864698889999999861988-9999-9974031020544445317---
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA-LNLK-DSLRNIDLLLIDDMQFLQG--- 273 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~-~~fr-~~~r~~DvLliDDiqfl~g--- 273 (502)
|.++||+|.|||-|.+||+-|. .+..+.++|...++.|+-.. .+.+ .-|+ .+-...-|.-||+|+-+-.
T Consensus 189 lLLfGPpgtGKtmL~~aiAsE~-----~atff~iSassLtsK~~Ge~-eK~vralf~vAr~~qPsvifidEidslls~Rs 262 (428)
T KOG0740 189 LLLFGPPGTGKTMLAKAIATES-----GATFFNISASSLTSKYVGES-EKLVRALFKVARSLQPSVIFIDEIDSLLSKRS 262 (428)
T ss_pred HHEECCCCCCHHHHHHHHHHHH-----CCEEEECCHHHHHHHCCCHH-HHHHHHHHHHHHHCCCEEEEECHHHHHHHHCC
T ss_conf 1200589884479999998620-----66576306888653246707-78999999998713970898402567886368
Q ss_pred -------CCHHHHHHHHHHHHHHCC--CEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf -------506999999999988569--87999648756761363034576530211577515888999999999998864
Q gi|254780627|r 274 -------KLIQHEFCHLLNSLLDSA--KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 (502)
Q Consensus 274 -------k~tqee~f~~~n~l~~~g--kqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~ 344 (502)
.+.+.||.-.+......+ +++|+.+..-|.+++ +-.+=||..=+- |..||.|||..++++.+..+
T Consensus 263 ~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D---ea~~Rrf~kr~y--iplPd~etr~~~~~~ll~~~- 336 (428)
T KOG0740 263 DNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD---EAARRRFVKRLY--IPLPDYETRSLLWKQLLKEQ- 336 (428)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHH---HHHHHHHCCEEE--ECCCCHHHHHHHHHHHHHHC-
T ss_conf 754544555655777654044578887079981588836778---888887103155--35988789999999999768-
Q ss_pred HHCCCCCCCHHHHHHHHHHCCC
Q ss_conf 3116897898999999850278
Q gi|254780627|r 345 KEDPKLNINEEVLMHVARTVTT 366 (502)
Q Consensus 345 ~~~~~~~l~~~v~~~la~~~~~ 366 (502)
+-.+.+.-++.||....+
T Consensus 337 ----~~~l~~~d~~~l~~~Teg 354 (428)
T KOG0740 337 ----PNGLSDLDISLLAKVTEG 354 (428)
T ss_pred ----CCCCCHHHHHHHHHHHCC
T ss_conf ----787417789999988617
No 72
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=98.62 E-value=2.9e-06 Score=64.56 Aligned_cols=271 Identities=17% Similarity=0.236 Sum_probs=166.3
Q ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC---CCCCC---EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 6447887632886147899999999824100136---55555---48986278888579999999999863068816864
Q gi|254780627|r 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT---TVRLN---PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 (502)
Q Consensus 159 NpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~---~~~~N---PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~ 232 (502)
-|.-||+.. |.-.+ +..-.+.+.+-|-+-.- ...-. -+++|||+|.|||-|..|++|++- +..+.+
T Consensus 200 ~P~vtyedi--G~l~e-~~~~~re~~elP~~hPe~f~~lGiePPkG~ll~GPPGtGktllaka~ane~~-----a~f~~i 271 (980)
T TIGR01243 200 VPEVTYEDI--GGLKE-AVKKIREMVELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG-----AYFIAI 271 (980)
T ss_pred CCCCCHHHC--CCHHH-HHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCC-----CEEEEE
T ss_conf 774203320--33589-9999999884357564789861889987358755898617899999875305-----517885
Q ss_pred EHHHHHHHHHHHHHCCCHHHHHHHHHH-CCHHHHHHHHHHCCCC---H-------HHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 698889999999861988999999740-3102054444531750---6-------9999999999885698799964875
Q gi|254780627|r 233 TAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLIDDMQFLQGKL---I-------QHEFCHLLNSLLDSAKQVVAAADRP 301 (502)
Q Consensus 233 ~~e~F~~~~~~a~~~~~~~~fr~~~r~-~DvLliDDiqfl~gk~---t-------qee~f~~~n~l~~~gkqiv~tsd~~ 301 (502)
.+-+.++.|+--...+--+-|++--.+ -.++.||.|.-++-|+ + --.|+.+.+-|..+|+-||+.+...
T Consensus 272 nGPeimsky~Ge~e~~lr~if~eaeenaP~iifideidaiaPkr~e~~Geve~r~v~qlltlmdGlk~rG~v~viGatnr 351 (980)
T TIGR01243 272 NGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGKVIVIGATNR 351 (980)
T ss_pred CCCHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 06034433136307899999986530587078741211007641000016889999999999740024872899814688
Q ss_pred HHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH----HHHHHHCCCCHHHHHHHHHH
Q ss_conf 67613630345765302115775158889999999999988643116897898999----99985027888999999999
Q gi|254780627|r 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL----MHVARTVTTSGRELDGAFNQ 377 (502)
Q Consensus 302 P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~----~~la~~~~~~vR~Legal~~ 377 (502)
|..|+ =.=|--.||.. -+.|..||.+.|..||+- +.+++++.+|+- --+......+-|--...+.+
T Consensus 352 P~a~d-PalrrPGrfdr--ei~~~~Pd~~~r~eil~~-------htr~mP~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (980)
T TIGR01243 352 PDALD-PALRRPGRFDR--EIEIGVPDKEGRKEILQI-------HTRNMPLAEDVDKDAVIKVLKDLEKDERFEKEKIEK 421 (980)
T ss_pred CCCCC-HHHCCCCCCCC--EEEECCCCHHHHHHHHHH-------HHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 50026-22427886443--357418854567888876-------414787501100578999998766655667889999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHH-HCCCHHHHHCCCCCHHHCHHHHHHHHHHHHHCCC
Q ss_conf 99986302468778899999876303-788757989999999998-0999999408887740144579999999985156
Q gi|254780627|r 378 LVFRHSFAPILTAEIADELLSHLVNT-GETKKMRIEDIQRMVAKH-YNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 (502)
Q Consensus 378 l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~i~~~~I~~~V~~~-~~i~~~~l~s~~R~~~i~~~RqiamyL~r~~t~~ 455 (502)
+.-.. ...-..+..+++++.--.. .+.+.--++.+.+..|+. .|..-.||- +.+|..||...|.+...
T Consensus 422 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~thG~~Gadla--------al~~eaam~~lrr~~~e 491 (980)
T TIGR01243 422 IIEKV--SKANSEDEIKEILKEDGNVYVEVRNRLIDKLLDKLAEVTHGFVGADLA--------ALAKEAAMAALRRLIRE 491 (980)
T ss_pred HHHHH--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHHHHHHHHHHCC
T ss_conf 99988--631026789999750121246789999999999886542362035599--------99899999999987402
Q ss_pred CH
Q ss_conf 87
Q gi|254780627|r 456 SF 457 (502)
Q Consensus 456 s~ 457 (502)
.-
T Consensus 492 g~ 493 (980)
T TIGR01243 492 GK 493 (980)
T ss_pred CC
T ss_conf 77
No 73
>KOG0989 consensus
Probab=98.61 E-value=8e-06 Score=61.39 Aligned_cols=270 Identities=14% Similarity=0.099 Sum_probs=143.1
Q ss_pred HHHHHCCCCCHHHHHHHHHH-HHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-HCCCCCEEEEEHHHHHHH
Q ss_conf 88763288614789999999-9824100136555554898627888857999999999986-306881686469888999
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQS-IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK-RQPNLRVVYLTAEYFMWR 240 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAka-VAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~-~~~~~~v~y~~~e~F~~~ 240 (502)
|||.++ |. +...++-++ +....++. +..|||+|.|||--.+|.+.++.- +-..++|+-..+.++.--
T Consensus 34 t~de~~-gQ--e~vV~~L~~a~~~~~lp~--------~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGi 102 (346)
T KOG0989 34 TFDELA-GQ--EHVVQVLKNALLRRILPH--------YLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGI 102 (346)
T ss_pred CHHHHC-CH--HHHHHHHHHHHHHCCCCE--------EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCC
T ss_conf 377650-15--999999999986068860--------7866899986768999999985574235554243136600143
Q ss_pred HHHHHHCCCHHHHHHHH-H-------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHH
Q ss_conf 99998619889999997-4-------031020544445317506999999999988569879996487567613630345
Q gi|254780627|r 241 FASAIRDNCALNLKDSL-R-------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 (502)
Q Consensus 241 ~~~a~~~~~~~~fr~~~-r-------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL 312 (502)
=+..-+.++....+... + ..-++++|+.+-+. ..+|--|-.+++..-..-.=|.+|+. + ..+..-+
T Consensus 103 svvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-sdaq~aLrr~mE~~s~~trFiLIcny--l---srii~pi 176 (346)
T KOG0989 103 SVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-SDAQAALRRTMEDFSRTTRFILICNY--L---SRIIRPL 176 (346)
T ss_pred CCHHHHHCCHHHHHHCCCCCCCCCCCCCEEEEEECHHHHH-HHHHHHHHHHHHCCCCCEEEEEECCC--H---HHCCHHH
T ss_conf 1006652379987502556567889863289974164530-99999999998625466599997388--5---6477287
Q ss_pred HHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 76530211577515888999999999998864311689789899999985027888999999999999863024687788
Q gi|254780627|r 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI 392 (502)
Q Consensus 313 ~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~ 392 (502)
+||.+.=.-- +-+.+.-+..|+. .++.+++.++++++++||+...|+.|.-+-.|-.+. .+++.|+...
T Consensus 177 ~SRC~KfrFk---~L~d~~iv~rL~~-----Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls---~~gk~It~~~ 245 (346)
T KOG0989 177 VSRCQKFRFK---KLKDEDIVDRLEK-----IASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLS---LLGKRITTSL 245 (346)
T ss_pred HHHHHHHCCC---CCCHHHHHHHHHH-----HHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH---CCCCCCCHHH
T ss_conf 7467771288---7644789999999-----988858997878999999973872899999999861---0476364588
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHH------CCCCCHHHCHHHHHHHHHHHHH--CCCCHHHHHHHH
Q ss_conf 99999876303788757989999999998099999940------8887740144579999999985--156878999884
Q gi|254780627|r 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLL------SNRRVRTVVRPRQVAMYLSKIM--TPRSFPEIGRRF 464 (502)
Q Consensus 393 ~~~~l~~~~~~~~~~~i~~~~I~~~V~~~~~i~~~~l~------s~~R~~~i~~~RqiamyL~r~~--t~~s~~~IG~~f 464 (502)
+.+.++.. ++-+.|.+...-.+.=+...+. .++-.-....-+|+|=++.... .+..-.+|+..|
T Consensus 246 ~~e~~~Gv--------Vp~~~l~~lle~a~S~d~~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~~g~~d~~k~~~~~kl 317 (346)
T KOG0989 246 VNEELAGV--------VPDEKLLDLLELALSADTPNTVKRVREIMRSGYSPLQLMSQLAEVIMDIIGLSDEQKAQISLKL 317 (346)
T ss_pred HHHHHHCC--------CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99998626--------8789999999999706838899999999982467999999999998705565617899999999
Q ss_pred CCCC
Q ss_conf 7984
Q gi|254780627|r 465 GDRD 468 (502)
Q Consensus 465 g~rd 468 (502)
+-++
T Consensus 318 ~~~~ 321 (346)
T KOG0989 318 FTRD 321 (346)
T ss_pred HHCC
T ss_conf 7026
No 74
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=98.55 E-value=7e-06 Score=61.83 Aligned_cols=300 Identities=15% Similarity=0.167 Sum_probs=161.9
Q ss_pred CCCCHHHHH--HHCCCCCHHHH-HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHH----HHHHHHHHHHHHHCCC-CC
Q ss_conf 576447887--63288614789-9999999824100136555554898627888857----9999999999863068-81
Q gi|254780627|r 157 PLDSRFVFS--TFIEGSSNRVA-LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT----HLLQAIANASIKRQPN-LR 228 (502)
Q Consensus 157 ~LNpryTFD--nFVVG~sN~lA-~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKT----HLl~ai~~~~~~~~~~-~~ 228 (502)
-|.+.|.=| +|| |--.|+- ++.+++-+-+||... +=.||||++|+||| |+++.+-.+...+.-. ..
T Consensus 7 ~L~~dY~Pden~i~-hRdeqI~~l~~~L~~~l~PG~~P-----~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~ 80 (383)
T TIGR02928 7 LLEPDYVPDENRIV-HRDEQIEELAKALRPILRPGSRP-----SNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVS 80 (383)
T ss_pred CCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCC-----CCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 37757702742466-86789999999988750674898-----7258878889878899999999999986226997158
Q ss_pred EEEEEHHHHH------HHHHHHH-H---CCCH--------HHHHHHHH-------HCCHHHHHHHHHHCCCCHHHH----
Q ss_conf 6864698889------9999998-6---1988--------99999974-------031020544445317506999----
Q gi|254780627|r 229 VVYLTAEYFM------WRFASAI-R---DNCA--------LNLKDSLR-------NIDLLLIDDMQFLQGKLIQHE---- 279 (502)
Q Consensus 229 v~y~~~e~F~------~~~~~a~-~---~~~~--------~~fr~~~r-------~~DvLliDDiqfl~gk~tqee---- 279 (502)
++|+.++.-- .+++..+ + ...+ +-|++-|. ..=|.++|+|.-|- ++.-++
T Consensus 81 ~~~~NC~~~~T~y~~~~~L~~~ln~~~~~~~vP~tG~s~~~~~~~l~~~l~~~~~~~~~ivLDEiD~Lv-~~~~d~PAyS 159 (383)
T TIGR02928 81 TVYINCQILDTSYQVLVELANQLNRRGSGEEVPTTGLSTSEVFRELYKELNRERGDSLIIVLDEIDKLV-RKDDDDPAYS 159 (383)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH-CCCCCCHHHH
T ss_conf 999778546846999999999851577888898877878999999999983201887999862310221-5888880787
Q ss_pred -HHHHHHHHHHCC----CE---EEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCH--HHHHHHHHHHH-HHHHHHCC
Q ss_conf -999999988569----87---999648756761363034576530211577515888--99999999999-88643116
Q gi|254780627|r 280 -FCHLLNSLLDSA----KQ---VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY--EMRFSILKNRL-AISQKEDP 348 (502)
Q Consensus 280 -~f~~~n~l~~~g----kq---iv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~--e~r~~Il~~k~-~~~~~~~~ 348 (502)
+++.+=...++| .+ |-||-| .+-+..|++|..|.|.- =+|.=|.| +-=..||+.+. ...+ ..
T Consensus 160 ~~LY~L~Ra~~~~~~~~~~vgvIgISND--~~f~~~Ld~RVkSsL~~---eei~FpPYdA~eL~~IL~~R~v~~AF--~d 232 (383)
T TIGR02928 160 KLLYQLSRARENGDLENAKVGVIGISND--LKFRENLDPRVKSSLCE---EEIVFPPYDAEELRDILENRAVEKAF--YD 232 (383)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEEECC--CHHHHHCCCCEECCCCC---CCCEECCCCHHHHHHHHHHHHHHHCC--CC
T ss_conf 8853433100035778853489998657--14364457530132487---40040798869999999720312033--68
Q ss_pred CCCCCHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH-HCC
Q ss_conf 89789899999985---02788899999999999986302468778899999876303788757989999999998-099
Q gi|254780627|r 349 KLNINEEVLMHVAR---TVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKH-YNI 424 (502)
Q Consensus 349 ~~~l~~~v~~~la~---~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~I~~~V~~~-~~i 424 (502)
| .++|+|+.+.|. +-+||-|.=.=.|-.=.-.|.. .....||.+.|.++..+. =.-
T Consensus 233 G-vl~d~VI~lcAA~aAq~hGDAR~AiDLLR~AGe~A~~-------------------~g~~~Vt~~HV~~A~e~~PE~~ 292 (383)
T TIGR02928 233 G-VLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAER-------------------EGAERVTEDHVEEAQEKIPEVD 292 (383)
T ss_pred C-CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-------------------CCCCCCHHHHHHHHHHHCCHHH
T ss_conf 8-5462279999998620678789999999987687531-------------------5763100888999998322288
Q ss_pred CHHHHHCCCCCHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf 99994088877401445799999999851568789998847984379999-999999998616999999999998742
Q gi|254780627|r 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH-AVRKVEKMLETDITLKKEVELLKRLIS 501 (502)
Q Consensus 425 ~~~~l~s~~R~~~i~~~RqiamyL~r~~t~~s~~~IG~~fg~rdHsTV~~-a~~ki~~~~~~d~~~~~~i~~i~~~i~ 501 (502)
...++ -+.....-|++.|-.-.+...+- + ...=-|+.+| .++.|-+.+..|+--.+.+..+.++|.
T Consensus 293 r~~e~-----~~~Lp~h~k~~L~A~~~l~~~~~---~---~~~~~t~~vY~~Y~~~c~~~~~dpl~~rR~~~~l~eL~ 359 (383)
T TIGR02928 293 RVLEL-----IRGLPTHSKLVLLAIANLAAESP---E---EDPFRTGEVYEVYKELCEDIGVDPLTQRRISDLLNELD 359 (383)
T ss_pred HHHHH-----HHCCCHHHHHHHHHHHHHHHHCC---C---CCEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 99998-----60798679999999999985167---8---87366127789999998762677661467999887676
No 75
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.55 E-value=5.7e-06 Score=62.46 Aligned_cols=219 Identities=17% Similarity=0.207 Sum_probs=130.6
Q ss_pred CCCCHHHHHHHCCCCCHHHH--HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 57644788763288614789--9999999824100136555554898627888857999999999986306881686469
Q gi|254780627|r 157 PLDSRFVFSTFIEGSSNRVA--LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 (502)
Q Consensus 157 ~LNpryTFDnFVVG~sN~lA--~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~ 234 (502)
.+...+.|+. ++|.|-.|- +.....||..+ .|++|.|.+|+||.++-++|-.. ..+.+.-.+-+++
T Consensus 135 ~~~~~~~~~~-lig~S~~m~~v~~~i~~~A~s~---------~~VLI~GEsGTGKe~~Ar~IH~~--S~r~~~pFv~vnc 202 (457)
T PRK11361 135 ALSTSWQWGH-ILTNSPAMMDICKDTAKIALSQ---------ASVLISGESGTGKELIARAIHYN--SRRAKGPFIKVNC 202 (457)
T ss_pred HHCCCCCCCC-CEECCHHHHHHHHHHHHHHCCC---------CCEEEECCCCCCHHHHHHHHHHH--CCCCCCCEEEEEC
T ss_conf 3201245677-4546999999999999984889---------95899889985789999999983--7988998387647
Q ss_pred HHHHHHHHHH----HHCCCH----HHHHHHHH--HCCHHHHHHHHHHCCCCHHHHHHHHHHHHH----------HCCCEE
Q ss_conf 8889999999----861988----99999974--031020544445317506999999999988----------569879
Q gi|254780627|r 235 EYFMWRFASA----IRDNCA----LNLKDSLR--NIDLLLIDDMQFLQGKLIQHEFCHLLNSLL----------DSAKQV 294 (502)
Q Consensus 235 e~F~~~~~~a----~~~~~~----~~fr~~~r--~~DvLliDDiqfl~gk~tqee~f~~~n~l~----------~~gkqi 294 (502)
..+..+.+.+ ...+.. ..-.-.+. +=--|.+|.|..+. ...|.-|...+..-. ..+-+|
T Consensus 203 ~ai~~~l~eseLFG~~kgaftga~~~~~G~~e~A~gGTLfLdeI~~l~-~~~Q~kLLr~L~~~~~~~~g~~~~~~~dvRi 281 (457)
T PRK11361 203 AALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMP-LVLQAKLLRILQEREFERIGGHQTIKVDIRI 281 (457)
T ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCEECCCHHHHH-HHHHHHHHHHHHCCCEEECCCCCEEEECCEE
T ss_conf 879857789997187667878853146986133599826314664523-9999999999864927856997136653489
Q ss_pred EEECCCCHHHH---CCCCHHHHHHHHCCEEEEECCCCHHHHHH----HHHHHHHHHHHHCCC---CCCCHHHHHHH-HHH
Q ss_conf 99648756761---36303457653021157751588899999----999999886431168---97898999999-850
Q gi|254780627|r 295 VAAADRPPSEL---ESLDPRIRSRLQGGVSVPLGLHDYEMRFS----ILKNRLAISQKEDPK---LNINEEVLMHV-ART 363 (502)
Q Consensus 295 v~tsd~~P~~l---~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~----Il~~k~~~~~~~~~~---~~l~~~v~~~l-a~~ 363 (502)
|.++.+.+.++ ..|.+-|..||. ++.|.-|-+-.|.. +.+.-+... +...+ ..+++++++.| +-.
T Consensus 282 IaaT~~~L~~~v~~g~Fr~DLyyrL~---~~~i~lPpLReR~eDI~~L~~~fl~~~-~~~~~~~~~~~s~~a~~~L~~y~ 357 (457)
T PRK11361 282 IAATNRDLQAMVKEGTFREDLFYRLN---VIHLILPPLRDRREDISLLANHFLQKF-SSENQRDIIDIDPMAMSLLTAWS 357 (457)
T ss_pred EECCCCCHHHHHHCCCCHHHHHHHHC---EEEEECCCHHHCHHHHHHHHHHHHHHH-HHHCCCCCCCCCHHHHHHHHCCC
T ss_conf 96578785999875832388995302---212517385458754999999999999-99749998988999999995699
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 278889999999999998630246877889
Q gi|254780627|r 364 VTTSGRELDGAFNQLVFRHSFAPILTAEIA 393 (502)
Q Consensus 364 ~~~~vR~Legal~~l~~~~~~~~~~~~~~~ 393 (502)
..||||||+..+-+....+. +..++.+..
T Consensus 358 WPGNvREL~n~ierav~~~~-~~~i~~~~l 386 (457)
T PRK11361 358 WPGNIRELSNVIERAVVMNS-GPIIFSEDL 386 (457)
T ss_pred CCCHHHHHHHHHHHHHHHCC-CCCCCHHHC
T ss_conf 99799999999999998289-981566768
No 76
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=98.52 E-value=2.6e-07 Score=72.01 Aligned_cols=114 Identities=19% Similarity=0.327 Sum_probs=70.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHH-HCCHHHHHHHHHHCCCC--
Q ss_conf 898627888857999999999986306881686469888999999986198899999974-03102054444531750--
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGKL-- 275 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r-~~DvLliDDiqfl~gk~-- 275 (502)
+.+||++|.|||-+.+|++++. +..++++++-++...++......-..-|..-.+ +--||+|||++-+.+++
T Consensus 1 iLl~GppGtGKT~~a~~la~~~-----~~~~~~v~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDe~d~l~~~~~~ 75 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL-----GAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAGSRGS 75 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHH-----CCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHCCCCC
T ss_conf 9878999999999999999997-----89853324201222334506888999999999749918983116777516788
Q ss_pred --------HHHHHHHHHHHHHHCCC-EEEEECCCCHHHHCCCCHHHH-HHHHCCE
Q ss_conf --------69999999999885698-799964875676136303457-6530211
Q gi|254780627|r 276 --------IQHEFCHLLNSLLDSAK-QVVAAADRPPSELESLDPRIR-SRLQGGV 320 (502)
Q Consensus 276 --------tqee~f~~~n~l~~~gk-qiv~tsd~~P~~l~~l~~rL~-SR~~~Gl 320 (502)
.+..|.+.++.+..... -+++.+-..|.. +++.+. |||.-=+
T Consensus 76 ~~~~~~~~~~~~ll~~ld~~~~~~~~v~~I~tTN~~~~---ld~al~r~Rfd~~i 127 (131)
T pfam00004 76 GGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDK---LDPALLRGRFDRII 127 (131)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHH---CCHHHHCCCCEEEE
T ss_conf 88875132687899998502246887699997599044---99779628332899
No 77
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.50 E-value=8.4e-05 Score=54.14 Aligned_cols=178 Identities=19% Similarity=0.270 Sum_probs=112.8
Q ss_pred HHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHC-----CCCCEEEEEHHHHHHH
Q ss_conf 63288614789999999982410013655555489862788885799999999998630-----6881686469888999
Q gi|254780627|r 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ-----PNLRVVYLTAEYFMWR 240 (502)
Q Consensus 166 nFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~-----~~~~v~y~~~e~F~~~ 240 (502)
.-|+|-..++- .+.+-.++- .-.||+ +-|.+|+|||-+..+++..+.+.. .+++|+-+.-- .
T Consensus 173 DpviGRd~Ei~-----r~i~IL~Rr---~KNNpi-LVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~LDlg----~ 239 (852)
T TIGR03346 173 DPVIGRDEEIR-----RTIQVLSRR---TKNNPV-LIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG----A 239 (852)
T ss_pred CCCCCCHHHHH-----HHHHHHHHH---CCCCCC-EECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEHH----H
T ss_conf 97738369999-----999999873---248972-1279998799999999999866999978851851275288----7
Q ss_pred HHHHHH-CCCHHH-HHHH---HHHCC---HHHHHHHHHHCCC--C-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCC-C
Q ss_conf 999986-198899-9999---74031---0205444453175--0-69999999999885698799964875676136-3
Q gi|254780627|r 241 FASAIR-DNCALN-LKDS---LRNID---LLLIDDMQFLQGK--L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELES-L 308 (502)
Q Consensus 241 ~~~a~~-~~~~~~-fr~~---~r~~D---vLliDDiqfl~gk--~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~-l 308 (502)
++.+-+ .|..++ ++.- ....+ +|-||+||-+-|- . -..-..+++.-...+|.-=++.+- .|.+-.. +
T Consensus 240 LvAGtkyRGeFEeRlk~ii~ev~~~~~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLarGelr~IgAT-T~~EYrk~i 318 (852)
T TIGR03346 240 LIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGAT-TLDEYRKYI 318 (852)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC-CHHHHHHHH
T ss_conf 7521530078999999999999858998799961255532688766641067774378747985599827-899999883
Q ss_pred --CHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf --03457653021157751588899999999999886431168978989999998
Q gi|254780627|r 309 --DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 (502)
Q Consensus 309 --~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la 361 (502)
+.-|.-||+ .+.+++|+.|.-+.||+.- ........++.+++++++..+
T Consensus 319 EkD~AL~RRFq---~I~V~EPs~e~t~~IL~gl-~~~yE~hH~V~i~d~Ai~aav 369 (852)
T TIGR03346 319 EKDAALERRFQ---PVFVDEPTVEDTISILRGL-KERYEVHHGVRITDPAIVAAA 369 (852)
T ss_pred HCCHHHHHHCC---CCCCCCCCHHHHHHHHHHH-HHHHHHCCCCEECHHHHHHHH
T ss_conf 22688997377---1204799868999999976-999976279267399999999
No 78
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=98.49 E-value=6.9e-05 Score=54.77 Aligned_cols=225 Identities=14% Similarity=0.157 Sum_probs=136.6
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC--------CCEEEEEH----
Q ss_conf 328861478999999998241001365555548986278888579999999999863068--------81686469----
Q gi|254780627|r 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN--------LRVVYLTA---- 234 (502)
Q Consensus 167 FVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~--------~~v~y~~~---- 234 (502)
+|--+--+-|.+--....+.|.... +==|.|+|++|.|||-++ ..+.+.||. .-|+|+-+
T Consensus 36 WIgY~~A~~~L~~Le~Ll~~P~~~R----mp~lLlvGdsnnGKT~Iv----~rF~~~hp~~~d~~~~~~PVl~vq~P~~p 107 (302)
T pfam05621 36 WIGYPRAVEALNRLEALYAWPNKQR----MPNLLLVGPTNNGKSMIV----EKFRRAHPAGSDADQEHIPVLVVQMPSEP 107 (302)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCC----CCCEEEEECCCCCHHHHH----HHHHHHCCCCCCCCCCCCEEEEEECCCCC
T ss_conf 3277899999999999984686468----875588707988789999----99999679987866670218999769998
Q ss_pred --HHHHHHHHHHHHCC-----CHHHHHH----HHH--HCCHHHHHHHHHH-CCC-CHHHHHHHHHHHHHHCCCE-EEEEC
Q ss_conf --88899999998619-----8899999----974--0310205444453-175-0699999999998856987-99964
Q gi|254780627|r 235 --EYFMWRFASAIRDN-----CALNLKD----SLR--NIDLLLIDDMQFL-QGK-LIQHEFCHLLNSLLDSAKQ-VVAAA 298 (502)
Q Consensus 235 --e~F~~~~~~a~~~~-----~~~~fr~----~~r--~~DvLliDDiqfl-~gk-~tqee~f~~~n~l~~~gkq-iv~ts 298 (502)
-.|......++... ...+-+. -+| ++-+|+||-+|.+ +|. ..|.+|++.+..|-+.-+- ||..+
T Consensus 108 ~~~~lY~~IL~~l~aP~~~~~~~~~~~~~~~~ll~~~~vrmLIIDEiHnlL~Gs~~~qr~~ln~LK~L~Nel~IpiV~vG 187 (302)
T pfam05621 108 SVIRFYVALLAAMGAPLRPRPRLPEMEQLALALLRKVGVRMLVIDELHNVLAGNSVNRREFLNLLRFLGNELRIPLVGVG 187 (302)
T ss_pred CHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 86899999999837877888778999999999999749878998543656048688999999999998636587869953
Q ss_pred CCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 8756761363034576530211577515888999999999998864311689-789899999985027888999999999
Q gi|254780627|r 299 DRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL-NINEEVLMHVARTVTTSGRELDGAFNQ 377 (502)
Q Consensus 299 d~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~-~l~~~v~~~la~~~~~~vR~Legal~~ 377 (502)
-..--..-.-++.|.|||.-=- .+-=++|.|-+ ..|.. ++...-....- --+.+.+..|-+...|++.++--.++.
T Consensus 188 t~eA~~ai~tD~QlasRF~~~~-Lp~W~~d~ef~-~LL~s-fe~~LPL~~~S~L~~~~~a~~I~~~SeG~iGei~~Ll~~ 264 (302)
T pfam05621 188 TRDAYLAIRSDDQLENRFEPML-LPPWEANDDCC-SLLAS-FAASLPLRRPSPIATLDMARYLLTRSEGTIGELAHLLMA 264 (302)
T ss_pred CHHHHHHHHCCHHHHHHCCCCC-CCCCCCCCHHH-HHHHH-HHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 1999999706888885058611-68888980899-99999-998688877768888999999999859928799999999
Q ss_pred HHHHHHH-CC-CCCHHHHHHHHHHHHCCC
Q ss_conf 9998630-24-687788999998763037
Q gi|254780627|r 378 LVFRHSF-AP-ILTAEIADELLSHLVNTG 404 (502)
Q Consensus 378 l~~~~~~-~~-~~~~~~~~~~l~~~~~~~ 404 (502)
..-.|-- +. .||.+....+ +++.+.
T Consensus 265 aA~~AI~sG~E~It~~~l~~~--~~i~ps 291 (302)
T pfam05621 265 AAIAAVESGEEAINHRTLSMA--DYIGPS 291 (302)
T ss_pred HHHHHHHCCCCCCCHHHHHHC--CCCCCC
T ss_conf 999998478710089999667--986833
No 79
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.46 E-value=2.9e-05 Score=57.47 Aligned_cols=222 Identities=14% Similarity=0.243 Sum_probs=136.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHH-HCCHHHHHHHHHHCCCCH
Q ss_conf 4898627888857999999999986306881686469888999999986198899999974-031020544445317506
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGKLI 276 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r-~~DvLliDDiqfl~gk~t 276 (502)
..+|+|+=++|||.|| -.+.+..++. ++|+..++...+..... .....+.+-+. .-..+++|-||++
T Consensus 39 i~~i~GpR~~GKTtll----k~l~~~~~~~-~iy~~~~d~~~~~~~l~--d~~~~~~~~~~~~~~yifLDEIq~v----- 106 (398)
T COG1373 39 IILILGPRQVGKTTLL----KLLIKGLLEE-IIYINFDDLRLDRIELL--DLLRAYIELKEREKSYIFLDEIQNV----- 106 (398)
T ss_pred EEEEECCCCCCHHHHH----HHHHHHCCCC-EEEEECCCCCCCHHHHH--HHHHHHHHHHCCCCCEEEEEEECCC-----
T ss_conf 4999888647789999----9999747773-59997362000135677--8999999852225745999833376-----
Q ss_pred HHHHHHHHHHHHHCCC-EEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 9999999999885698-799964875676136303457653021157751588899999999999886431168978989
Q gi|254780627|r 277 QHEFCHLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 (502)
Q Consensus 277 qee~f~~~n~l~~~gk-qiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~ 355 (502)
++.+..++.|++.|. .+++|+..++-.+....+.|..| |....+-|-++...+.... +.+. ..
T Consensus 107 -~~W~~~lk~l~d~~~~~v~itgsss~ll~~~~s~~L~GR---~~~~~l~PlSF~Efl~~~~----------~~~~--~~ 170 (398)
T COG1373 107 -PDWERALKYLYDRGNLDVLITGSSSSLLSKEISESLAGR---GKDLELYPLSFREFLKLKG----------EEIE--PS 170 (398)
T ss_pred -HHHHHHHHHHHCCCCCEEEEECCCHHHHCCCHHHHCCCC---EEEEEECCCCHHHHHHHCC----------CCCC--HH
T ss_conf -108999999975677509998371675413302324998---2378984888899864135----------2100--25
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 99999850278889999999999998630246877889999987630378875798999999999809999994088877
Q gi|254780627|r 356 VLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 (502)
Q Consensus 356 v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~I~~~V~~~~~i~~~~l~s~~R~ 435 (502)
.++..+.+.. ..|+-+..-... ..+. . ...+.. .+-..|+....+.
T Consensus 171 --------------~~~~~f~~Yl---~~GGfP~~v~~~--------~~~~-~--~~~~~~------~~~~~Di~~~~~~ 216 (398)
T COG1373 171 --------------KLELLFEKYL---ETGGFPESVKAD--------LSEK-K--LKEYLD------TILKRDIIERGKI 216 (398)
T ss_pred --------------HHHHHHHHHH---HHCCCCHHHHCC--------CHHH-H--HHHHHH------HHHHHHHHHHCCC
T ss_conf --------------6799999987---728985665265--------2356-7--889999------9987668876374
Q ss_pred HHHCHHHHHHHHHHHHHC-CCCHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 401445799999999851-5687899988479843799999999999
Q gi|254780627|r 436 RTVVRPRQVAMYLSKIMT-PRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 (502)
Q Consensus 436 ~~i~~~RqiamyL~r~~t-~~s~~~IG~~fg~rdHsTV~~a~~ki~~ 481 (502)
++....|.++++|+...- ..|+.+|.+.+++.+|.||-.-+.-.++
T Consensus 217 ~~~~~~k~i~~~l~~~~g~~~s~~~l~~~l~~is~~Tv~~yl~~le~ 263 (398)
T COG1373 217 ENADLMKRILRFLASNIGSPISYSSLARELKGISKDTIRKYLSYLED 263 (398)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 44799999999987503664569999999723446689999999854
No 80
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.44 E-value=9.4e-06 Score=60.89 Aligned_cols=206 Identities=16% Similarity=0.187 Sum_probs=122.3
Q ss_pred CCCCCHHHH--HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH
Q ss_conf 288614789--999999982410013655555489862788885799999999998630688168646988899999998
Q gi|254780627|r 168 IEGSSNRVA--LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 (502)
Q Consensus 168 VVG~sN~lA--~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~ 245 (502)
++|.|-.|- +..+..+|... .|++|.|.+|+||.++-++| |.. ..+.+.-.+-+++..+..+...+-
T Consensus 141 liG~S~am~~v~~~i~~~A~s~---------~pVLI~GE~GTGK~~~Ar~I-H~~-S~r~~~pfv~vnC~~l~~~l~ese 209 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAPSE---------ATVLIHGDSGTGKELVARAI-HAS-SARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred CEECCHHHHHHHHHHHHHHCCC---------CCEEEECCCCHHHHHHHHHH-HHC-CCCCCCCCEEEECCCCCHHHHHHH
T ss_conf 6668999999999999984889---------94899899981099999999-965-787789807987898984555898
Q ss_pred ----HCCCHH---HH-HHHHH--HCCHHHHHHHHHHCCCCHHHHHHHHHHHHH----------HCCCEEEEECCCCHHHH
Q ss_conf ----619889---99-99974--031020544445317506999999999988----------56987999648756761
Q gi|254780627|r 246 ----RDNCAL---NL-KDSLR--NIDLLLIDDMQFLQGKLIQHEFCHLLNSLL----------DSAKQVVAAADRPPSEL 305 (502)
Q Consensus 246 ----~~~~~~---~f-r~~~r--~~DvLliDDiqfl~gk~tqee~f~~~n~l~----------~~gkqiv~tsd~~P~~l 305 (502)
..+... .- .-++. +-.-|.+|+|..+. ...|..|++.+..-. ..+-+||.++.+...++
T Consensus 210 LFG~~~gaftga~~~~~g~~~~A~gGTLfLdeI~~l~-~~~Q~kLl~~l~~~~~~~~g~~~~~~~d~RiIaat~~~l~~~ 288 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS-PMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAE 288 (441)
T ss_pred HCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCCCC-HHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCHHHH
T ss_conf 6177556878965346898778899825502315299-999999998777521000588734413637998378899999
Q ss_pred ---CCCCHHHHHHHHCCEEEEECCCCHHHHHH----HHHHHHHHHHHHCCC---CCCCHHHHHHH-HHHCCCCHHHHHHH
Q ss_conf ---36303457653021157751588899999----999999886431168---97898999999-85027888999999
Q gi|254780627|r 306 ---ESLDPRIRSRLQGGVSVPLGLHDYEMRFS----ILKNRLAISQKEDPK---LNINEEVLMHV-ARTVTTSGRELDGA 374 (502)
Q Consensus 306 ---~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~----Il~~k~~~~~~~~~~---~~l~~~v~~~l-a~~~~~~vR~Lega 374 (502)
..|.+.|.-|++. +.|.-|-+-.|.. +++.-+... +...+ ..+++++++.| +-...||||||+-+
T Consensus 289 v~~g~Fr~dLy~rL~~---~~i~lPpLReR~eDI~~L~~~fl~~~-~~~~~~~~~~~s~~a~~~L~~y~WPGNvREL~n~ 364 (441)
T PRK10365 289 VNAGRFRQDLYYRLNV---VAIEVPSLRQRREDIPLLAGHFLQRF-AERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 (441)
T ss_pred HHCCCCHHHHHHHHCC---HHCCCCCCCCCCCHHHHHHHHHHHHH-HHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 8819825899988601---11378260006200999999999999-9984999888899999999709999899999999
Q ss_pred HHHHHHHHHHCCCCCH
Q ss_conf 9999998630246877
Q gi|254780627|r 375 FNQLVFRHSFAPILTA 390 (502)
Q Consensus 375 l~~l~~~~~~~~~~~~ 390 (502)
+.+....+. +..|+.
T Consensus 365 iera~~~~~-~~~i~~ 379 (441)
T PRK10365 365 VERAVVLLT-GEYISE 379 (441)
T ss_pred HHHHHHHCC-CCCCCH
T ss_conf 999999578-986884
No 81
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.41 E-value=0.00016 Score=52.16 Aligned_cols=204 Identities=20% Similarity=0.240 Sum_probs=123.7
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCC--EEEEEHHHHHH
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630-6881--68646988899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ-PNLR--VVYLTAEYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~-~~~~--v~y~~~e~F~~ 239 (502)
+|+++ ||..+ ...++.-|-..++.. +--...|+-|+|||-+-.-++-.+.-.+ +... ..|..+.....
T Consensus 14 ~F~ev-vGQe~---v~~~L~nal~~~ri~-----hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 14 TFDDV-VGQEH---VVKTLSNALENGRIA-----HAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINE 84 (515)
T ss_pred CHHHH-CCCHH---HHHHHHHHHHHCCCH-----HHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 07776-36489---999999999808423-----3365137777671049999999956889877772253166686514
Q ss_pred H------HHHHHHCCCHHHHH---HHHH------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH-------CCCEEEEE
Q ss_conf 9------99998619889999---9974------0310205444453175069999999999885-------69879996
Q gi|254780627|r 240 R------FASAIRDNCALNLK---DSLR------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLD-------SAKQVVAA 297 (502)
Q Consensus 240 ~------~~~a~~~~~~~~fr---~~~r------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~-------~gkqiv~t 297 (502)
. -++|..++.+++-| ++-+ ..-|.+||.+|.|+ .+.||+|+- +=+=|..|
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------~~afNALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------KQAFNALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHH--------HHHHHHHHCCCCCCCCCEEEEEEC
T ss_conf 886410113644454867999999872468866664189983187643--------788888751113686674899853
Q ss_pred CCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 48756761363034576530211577515888999999999998864311689789899999985027888999999999
Q gi|254780627|r 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 (502)
Q Consensus 298 sd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~ 377 (502)
.+ |. .+..-..||++ .-+...-+.+.-..-|.. ....+++..+++++.+||....|+.|+..+.|.+
T Consensus 157 Te--~~---Kip~TIlSRcq---~f~fkri~~~~I~~~L~~-----i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq 223 (515)
T COG2812 157 TE--PQ---KIPNTILSRCQ---RFDFKRLDLEEIAKHLAA-----ILDKEGINIEEDALSLIARAAEGSLRDALSLLDQ 223 (515)
T ss_pred CC--CC---CCCHHHHHCCC---CCCCCCCCHHHHHHHHHH-----HHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 88--67---68404552122---022257999999999999-----9874487547999999999828974567778999
Q ss_pred HHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999863024687788999998
Q gi|254780627|r 378 LVFRHSFAPILTAEIADELLS 398 (502)
Q Consensus 378 l~~~~~~~~~~~~~~~~~~l~ 398 (502)
..++.. +.+|.+.+...++
T Consensus 224 ~i~~~~--~~It~~~v~~~lG 242 (515)
T COG2812 224 AIAFGE--GEITLESVRDMLG 242 (515)
T ss_pred HHHCCC--CCCCHHHHHHHHC
T ss_conf 997067--7656999999968
No 82
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=3.8e-05 Score=56.62 Aligned_cols=211 Identities=15% Similarity=0.179 Sum_probs=125.5
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE---EHHHHHH
Q ss_conf 8876328861478999999998241001365555548986278888579999999999863068816864---6988899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL---TAEYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~---~~e~F~~ 239 (502)
||+..| |-. ...-+-..++.. |+.. .-....|+-|+|||-+-..++..+.-.++...--|- ++-.+.+
T Consensus 14 ~F~e~v-GQ~-~v~~~L~nal~~--~rl~-----haylf~G~rGvGKTt~Ari~Ak~lNC~~~~~~~pCg~C~~C~~i~~ 84 (704)
T PRK08691 14 TFADLV-GQE-HVVKALQNALDE--GRLH-----HAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDA 84 (704)
T ss_pred CHHHHC-CCH-HHHHHHHHHHHH--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 475641-869-999999999981--9975-----2375027898788899999999967999999997877776787855
Q ss_pred ----H--HHHHHHCCCHHHHHHHHH---------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf ----9--999986198899999974---------0310205444453175069999999999885698799964875676
Q gi|254780627|r 240 ----R--FASAIRDNCALNLKDSLR---------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 240 ----~--~~~a~~~~~~~~fr~~~r---------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
+ -++|-.+..+++.|+-.. ..-|.|||.+|.|+ +...+-|+-|+.+==.+-|=|..|.| |..
T Consensus 85 g~~~D~~EiDaAs~~~vdd~R~l~~~~~y~P~~~~yKVyiiDEvhmLs-~~afNAlLKtLEEPP~~v~FilaTTd--p~K 161 (704)
T PRK08691 85 GRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-KSAFNAMLKTLEEPPEHVKFILATTD--PHK 161 (704)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCC-HHHHHHHHHHHCCCCCCEEEEEECCC--HHH
T ss_conf 899874774245445889999999853468867853599983154438-99999999861479756089985488--464
Q ss_pred HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
+..-+.||+. ...+.+-+.+.-..-|..- ...+++..+++.+..||+.-.|++|+-...+.+.+++.
T Consensus 162 ---lp~TIlSRC~---~f~l~~~~~~~i~~~L~~i-----~~~E~i~~e~~al~~ia~~a~Gs~RDalslldQaia~~-- 228 (704)
T PRK08691 162 ---VPVTVLSRCL---QFVLRNMTAQQVADHLAHV-----LDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALG-- 228 (704)
T ss_pred ---CCHHHHHHHH---HHCCCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--
T ss_conf ---7589998887---7102689999999999999-----99839856899999999975785777988999999964--
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24687788999998
Q gi|254780627|r 385 APILTAEIADELLS 398 (502)
Q Consensus 385 ~~~~~~~~~~~~l~ 398 (502)
++.++.+.++..|+
T Consensus 229 ~g~~~~~~v~~mLG 242 (704)
T PRK08691 229 SGKVAENDVRQMIG 242 (704)
T ss_pred CCCCCHHHHHHHHC
T ss_conf 89626999999858
No 83
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.38 E-value=0.0002 Score=51.53 Aligned_cols=175 Identities=22% Similarity=0.296 Sum_probs=114.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHC-C----CCCEEEEEHHHHHHHHH
Q ss_conf 288614789999999982410013655555489862788885799999999998630-6----88168646988899999
Q gi|254780627|r 168 IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ-P----NLRVVYLTAEYFMWRFA 242 (502)
Q Consensus 168 VVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~-~----~~~v~y~~~e~F~~~~~ 242 (502)
|+|-..++- .+.+-.++- .-.||+ +-|.+|+|||-+..+++..+.... | +++|+-+.-- .++
T Consensus 189 vIGRd~EI~-----r~iqIL~Rr---~KNNPi-LVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDlg----~Lv 255 (852)
T TIGR03345 189 VLGRDDEIR-----QMIDILLRR---RQNNPI-LTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLG----LLQ 255 (852)
T ss_pred CCCCHHHHH-----HHHHHHHHH---CCCCCE-EECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHH----HHH
T ss_conf 869499999-----999999862---479974-6579998799999999999976999867743856786788----886
Q ss_pred HHHH-CCCHHH-HHHHHH----HC--CHHHHHHHHHHCCC---CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHC-CC--
Q ss_conf 9986-198899-999974----03--10205444453175---06999999999988569879996487567613-63--
Q gi|254780627|r 243 SAIR-DNCALN-LKDSLR----NI--DLLLIDDMQFLQGK---LIQHEFCHLLNSLLDSAKQVVAAADRPPSELE-SL-- 308 (502)
Q Consensus 243 ~a~~-~~~~~~-fr~~~r----~~--DvLliDDiqfl~gk---~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~-~l-- 308 (502)
.+-+ .|..++ ++.-.. +- -+|-||+||-+-|- .-..-..+++.-...+|.--++.+.. +.+-. .+
T Consensus 256 AGtkyRGeFEeRlk~ii~ei~~~~~~iILFIDEiHtlvGAG~~~G~~DaaNiLKPaLarGelr~IGATT-~~EYrk~iEk 334 (852)
T TIGR03345 256 AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATT-WAEYKKYFEK 334 (852)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC-HHHHHHHHHC
T ss_conf 403576359999999999998489976999634877528998888622788751787378734998357-8999888642
Q ss_pred CHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 0345765302115775158889999999999988643116897898999999
Q gi|254780627|r 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 (502)
Q Consensus 309 ~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~l 360 (502)
+.-|.-||+ .+.|++|+.|.-+.||+.- ........++.++++++...
T Consensus 335 D~AL~RRFq---~V~V~EPs~eeti~IL~gl-k~~yE~hH~V~i~d~Ai~aA 382 (852)
T TIGR03345 335 DPALTRRFQ---VVKVEEPDEETAIRMLRGL-APVLEKHHGVLILDEAVVAA 382 (852)
T ss_pred CHHHHHHCC---CCCCCCCCHHHHHHHHHHH-HHHHHHCCCEEEEHHHHHHH
T ss_conf 688996247---5527999879999999987-99985547968708999999
No 84
>KOG0733 consensus
Probab=98.37 E-value=8.1e-06 Score=61.36 Aligned_cols=161 Identities=20% Similarity=0.252 Sum_probs=100.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCH----HHHHHHHHH-CCHHHHHHHHHHCC
Q ss_conf 8986278888579999999999863068816864698889999999861988----999999740-31020544445317
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA----LNLKDSLRN-IDLLLIDDMQFLQG 273 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~----~~fr~~~r~-~DvLliDDiqfl~g 273 (502)
+.+|||+|.|||-|.+||++++- .-.+-++|- +.|+.+....- +-|.+-+++ --++.||||.-+..
T Consensus 226 vLlHGPPGCGKT~lA~AiAgel~-----vPf~~isAp----eivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~p 296 (802)
T KOG0733 226 VLLHGPPGCGKTSLANAIAGELG-----VPFLSISAP----EIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITP 296 (802)
T ss_pred EEEECCCCCCHHHHHHHHHHHCC-----CCEEEECCH----HHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 16448998647899999752128-----854851414----653155752289999999987366975998511001364
Q ss_pred C-C-HHHHH--------HHHHHHHHHC---CCE-EEEECCCCHHHHCCCCHHH--HHHHHCCEEEEECCCCHHHHHHHHH
Q ss_conf 5-0-69999--------9999998856---987-9996487567613630345--7653021157751588899999999
Q gi|254780627|r 274 K-L-IQHEF--------CHLLNSLLDS---AKQ-VVAAADRPPSELESLDPRI--RSRLQGGVSVPLGLHDYEMRFSILK 337 (502)
Q Consensus 274 k-~-tqee~--------f~~~n~l~~~---gkq-iv~tsd~~P~~l~~l~~rL--~SR~~~Gl~~~i~~Pd~e~r~~Il~ 337 (502)
| . .|.|. +.-.|.|-.. |+. +||.+..-|.. |++-| ..||..-+ .|.-||-..|..||+
T Consensus 297 kRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDs---lDpaLRRaGRFdrEI--~l~vP~e~aR~~IL~ 371 (802)
T KOG0733 297 KREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDS---LDPALRRAGRFDREI--CLGVPSETAREEILR 371 (802)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCC---CCHHHHCCCCCCCEE--EECCCCHHHHHHHHH
T ss_conf 404578899999999999851002566668997699824789765---587773256553235--306896688999999
Q ss_pred HHHHHHHHHCCCCCCCHH-HHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 999886431168978989-9999985027888999999999999
Q gi|254780627|r 338 NRLAISQKEDPKLNINEE-VLMHVARTVTTSGRELDGAFNQLVF 380 (502)
Q Consensus 338 ~k~~~~~~~~~~~~l~~~-v~~~la~~~~~~vR~Legal~~l~~ 380 (502)
..|.. +.++.+ -...||.-..|=|-.=--||.+..+
T Consensus 372 ~~~~~-------lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa 408 (802)
T KOG0733 372 IICRG-------LRLSGDFDFKQLAKLTPGFVGADLMALCREAA 408 (802)
T ss_pred HHHHH-------CCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 99862-------77787768999975188752141999999999
No 85
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.37 E-value=1.7e-05 Score=59.01 Aligned_cols=225 Identities=16% Similarity=0.230 Sum_probs=139.4
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHH------HCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 764478876328861478999999998------24100136555554898627888857999999999986306881686
Q gi|254780627|r 158 LDSRFVFSTFIEGSSNRVALTAAQSIA------EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 (502)
Q Consensus 158 LNpryTFDnFVVG~sN~lA~aAAkaVA------e~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y 231 (502)
+|-.-....-|+|...... +.|.+|- .+|.++. --++..||+|+|||.|..+++..+... +.+++-
T Consensus 557 ~~Le~~L~~rViGQd~AI~-~I~~aI~~sraGL~dp~rP~-----GsFlf~GptGvGKTELAKaLAe~Lfg~--~~~LIr 628 (852)
T TIGR03346 557 LHMEEVLHERVVGQDEAVE-AVSDAIRRSRAGLSDPNRPI-----GSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVR 628 (852)
T ss_pred HHHHHHHHHHHCCHHHHHH-HHHHHHHHHHCCCCCCCCCC-----EEEEEECCCCCCHHHHHHHHHHHHHCC--CCCEEE
T ss_conf 8788889989717099999-99999999971888899974-----589986788776899999999998558--520698
Q ss_pred EEHHHHHHHH-HHHHHC-----------CCH-HHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHHCC-----
Q ss_conf 4698889999-999861-----------988-999999740310205444453175069999999999--88569-----
Q gi|254780627|r 232 LTAEYFMWRF-ASAIRD-----------NCA-LNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNS--LLDSA----- 291 (502)
Q Consensus 232 ~~~e~F~~~~-~~a~~~-----------~~~-~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~--l~~~g----- 291 (502)
+.--+|+... ++-+-. +-. +..| -+-.-|+|+|.|.- +....++-|+++|+. |.+..
T Consensus 629 iDMSEy~E~hsvsrLiGaPPGYVGy~egG~Lte~vr--~~PysVvL~DEIEK-Ah~~V~~~lLQilD~G~ltD~~Gr~vd 705 (852)
T TIGR03346 629 IDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVR--RKPYSVVLFDEVEK-AHPDVFNVLLQVLDDGRLTDGQGRTVD 705 (852)
T ss_pred ECHHHHCCHHHHHHHCCCCCCCCCCCCCCEECHHHH--HCCCEEEEECCHHH-HCHHHHHHHHHHHCCCEEECCCCCEEE
T ss_conf 430443012247785589997677687874239898--19887998530543-076899999988236743079998885
Q ss_pred ---CEEEEECCCCHHHHC---------------------CCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHH--
Q ss_conf ---879996487567613---------------------630345765302115775158889999999999988643--
Q gi|254780627|r 292 ---KQVVAAADRPPSELE---------------------SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK-- 345 (502)
Q Consensus 292 ---kqiv~tsd~~P~~l~---------------------~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~-- 345 (502)
--||+||.---.++. .|.+.+..|+.. ++.-.|-+.+.-..|+...+..-..
T Consensus 706 F~NtiiimTSN~Ga~~i~~~~~~~~~~~~~~~~~~~~~~~F~PEflnRid~--ii~F~~L~~~~l~~I~~~~l~~l~~~l 783 (852)
T TIGR03346 706 FRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDE--IVVFHPLGREQIARIVEIQLGRLRKRL 783 (852)
T ss_pred EEEEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCE--EEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 355689861540659997411455579999999999996589989963786--898378999999999999999999999
Q ss_pred --HCCCCCCCHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
Q ss_conf --116897898999999850278---88999999999999863024687788999998763037
Q gi|254780627|r 346 --EDPKLNINEEVLMHVARTVTT---SGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTG 404 (502)
Q Consensus 346 --~~~~~~l~~~v~~~la~~~~~---~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 404 (502)
..-.+.+++++.+||+....+ ..|.|..++.+.+ ...++..+|..-+..+
T Consensus 784 ~~~~i~l~~~~~~~~~l~~~g~~~~~GAR~l~r~i~~~i---------~~~la~~iL~g~~~~g 838 (852)
T TIGR03346 784 AERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREI---------ENPLAKKILAGEVADG 838 (852)
T ss_pred HHCCCEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHH---------HHHHHHHHHCCCCCCC
T ss_conf 977984998889999999848897747156999999998---------8999999974888995
No 86
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.36 E-value=1e-05 Score=60.64 Aligned_cols=201 Identities=18% Similarity=0.195 Sum_probs=123.0
Q ss_pred CCCCCHHHH--HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH
Q ss_conf 288614789--999999982410013655555489862788885799999999998630688168646988899999998
Q gi|254780627|r 168 IEGSSNRVA--LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 (502)
Q Consensus 168 VVG~sN~lA--~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~ 245 (502)
++|.|-.|- +.-...||..+ -|.+|.|.+|+||..+-++|-+ ...+.+.-.+++++.......+.+-
T Consensus 188 lIG~S~~m~~l~~~i~~vA~sd---------~pVLI~GEtGTGKelvAr~IH~--~S~R~~~Pfv~vNCaalpe~l~Ese 256 (510)
T PRK05022 188 MIGQSPAMQQLKKEIEVVAASD---------LNVLITGETGVGKELVARAIHQ--ASPRAVKPLVYLNCAALPESLAESE 256 (510)
T ss_pred EEECCHHHHHHHHHHHHHHCCC---------CCEEEECCCCCCHHHHHHHHHH--CCCCCCCCCEEEECCCCCHHHHHHH
T ss_conf 5208999999999999996899---------9889889898139999999996--6887899857888999985678998
Q ss_pred H----CCC----HHHHHHHHH--HCCHHHHHHHHHHCCCCHHHHHHHHHHH----------HHHCCCEEEEECCCCHHHH
Q ss_conf 6----198----899999974--0310205444453175069999999999----------8856987999648756761
Q gi|254780627|r 246 R----DNC----ALNLKDSLR--NIDLLLIDDMQFLQGKLIQHEFCHLLNS----------LLDSAKQVVAAADRPPSEL 305 (502)
Q Consensus 246 ~----~~~----~~~fr~~~r--~~DvLliDDiqfl~gk~tqee~f~~~n~----------l~~~gkqiv~tsd~~P~~l 305 (502)
- ++. ...-.-++. +---|.+|+|..+. ...|.-|+..+.. -..-+-+||.++.+.+.+.
T Consensus 257 LFGh~kGaFtGA~~~r~G~fe~A~gGTLfLDEI~~Lp-l~~Q~KLLrvLq~g~iqrvG~~~~~~vdvRIIAATnrdL~~~ 335 (510)
T PRK05022 257 LFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELP-LALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREE 335 (510)
T ss_pred HCCCCCCCCCCCCCCCCCCEEECCCCEEEEECHHHCC-HHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEECCCCHHHH
T ss_conf 6597778868865567881017789879875745499-999999999984795885589946666689996078359999
Q ss_pred C---CCCHHHHHHHHCCEEEEECCCCHHHHHHH----HHHHHHHHHHH--CCCCCCCHHHHHHHHH-HCCCCHHHHHHHH
Q ss_conf 3---63034576530211577515888999999----99999886431--1689789899999985-0278889999999
Q gi|254780627|r 306 E---SLDPRIRSRLQGGVSVPLGLHDYEMRFSI----LKNRLAISQKE--DPKLNINEEVLMHVAR-TVTTSGRELDGAF 375 (502)
Q Consensus 306 ~---~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~I----l~~k~~~~~~~--~~~~~l~~~v~~~la~-~~~~~vR~Legal 375 (502)
- .|-+-|.-|++ +..|.-|-+-.|..= ...-++....+ .....+++++++.|.. ...|||||||.++
T Consensus 336 V~~G~FR~DLYyRLs---v~~I~vPPLRER~eDI~lLa~~FLe~~~~~~g~~~~~ls~eAl~~L~~Y~WPGNVRELenvI 412 (510)
T PRK05022 336 VLAGRFRADLYHRLS---VFPLPVPPLRERGDDVLLLAGYFLEQNRLRLGLSSLRLSPDAQAALLQYDWPGNVRELEHVI 412 (510)
T ss_pred HHCCCHHHHHHHHHH---CCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 883963899998762---04034808655554099999999999999829898988899999997099997899999999
Q ss_pred HHHHHHHH
Q ss_conf 99999863
Q gi|254780627|r 376 NQLVFRHS 383 (502)
Q Consensus 376 ~~l~~~~~ 383 (502)
.+....+.
T Consensus 413 eRA~lla~ 420 (510)
T PRK05022 413 SRAALLAR 420 (510)
T ss_pred HHHHHHHC
T ss_conf 99999715
No 87
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.7e-05 Score=59.14 Aligned_cols=158 Identities=25% Similarity=0.409 Sum_probs=98.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCC--H-HHHH-HHHHHCCHHHHHHHHHHCCC
Q ss_conf 898627888857999999999986306881686469888999999986198--8-9999-99740310205444453175
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC--A-LNLK-DSLRNIDLLLIDDMQFLQGK 274 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~--~-~~fr-~~~r~~DvLliDDiqfl~gk 274 (502)
..+|||+|.|||-|..|++|+. ++..+-+.+-+|+..|+ ..+. + +-|+ .+=..--+.-||-|.-+++|
T Consensus 188 VLLYGPPGTGKTLLAkAVA~~T-----~AtFIrvvgSElVqKYi---GEGaRlVRelF~lArekaPsIIFiDEIDAIg~k 259 (406)
T COG1222 188 VLLYGPPGTGKTLLAKAVANQT-----DATFIRVVGSELVQKYI---GEGARLVRELFELAREKAPSIIFIDEIDAIGAK 259 (406)
T ss_pred EEEECCCCCCHHHHHHHHHHCC-----CCEEEEECCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCC
T ss_conf 2766899975889999987205-----86699942199999983---411699999999874149849998311223111
Q ss_pred C----------HHHHHHHHHHHHH---HC-CCEEEEECCCCHHHHCCCCHHHH--HHHHCCEEEEECCCCHHHHHHHHHH
Q ss_conf 0----------6999999999988---56-98799964875676136303457--6530211577515888999999999
Q gi|254780627|r 275 L----------IQHEFCHLLNSLL---DS-AKQVVAAADRPPSELESLDPRIR--SRLQGGVSVPLGLHDYEMRFSILKN 338 (502)
Q Consensus 275 ~----------tqee~f~~~n~l~---~~-gkqiv~tsd~~P~~l~~l~~rL~--SR~~~Gl~~~i~~Pd~e~r~~Il~~ 338 (502)
+ .|--+..++|.|- .. +=.||.+..|+ +-|++-|. .||-. .+++..||.+.|..||+-
T Consensus 260 R~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~----D~LDPALLRPGR~DR--kIEfplPd~~gR~~Il~I 333 (406)
T COG1222 260 RFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRP----DILDPALLRPGRFDR--KIEFPLPDEEGRAEILKI 333 (406)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC----CCCCHHHCCCCCCCC--EEECCCCCHHHHHHHHHH
T ss_conf 13688885099999999999860588978876899855885----555766508875453--011689897899999998
Q ss_pred HHHHHHHHCCCCCCCHHH-HHHHHHHCCC-CHHHHHHHHHH
Q ss_conf 998864311689789899-9999850278-88999999999
Q gi|254780627|r 339 RLAISQKEDPKLNINEEV-LMHVARTVTT-SGRELDGAFNQ 377 (502)
Q Consensus 339 k~~~~~~~~~~~~l~~~v-~~~la~~~~~-~vR~Legal~~ 377 (502)
-. ..+.+.++| ++-||....+ |--+|-+.++.
T Consensus 334 Ht-------rkM~l~~dvd~e~la~~~~g~sGAdlkaictE 367 (406)
T COG1222 334 HT-------RKMNLADDVDLELLARLTEGFSGADLKAICTE 367 (406)
T ss_pred HH-------HHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 76-------21467667699999875389956779999998
No 88
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=98.33 E-value=6.2e-05 Score=55.07 Aligned_cols=166 Identities=19% Similarity=0.188 Sum_probs=102.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH-----HHH------HHHHHC----C----------CH
Q ss_conf 5548986278888579999999999863068816864698889-----999------999861----9----------88
Q gi|254780627|r 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM-----WRF------ASAIRD----N----------CA 250 (502)
Q Consensus 196 ~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~-----~~~------~~a~~~----~----------~~ 250 (502)
++|++|||+-|.|||.|++...++... ++..++|..+-.-. ..+ ...+.. . ..
T Consensus 20 ~~~ivi~G~RR~GKTsLi~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 97 (223)
T pfam01637 20 YPIIVVYGPRRCGKTALLREFLEELRE--LGYRVIYYDPLRREFEEKLDRFEEAKRLAEALGDALPKIGIAKSKLAFLSL 97 (223)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC--CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 718999868878799999999986334--685289995144437999998888899999987651233222112078899
Q ss_pred HHHHHHHHH--CC-HHHHHHHHHHCC-C---CHHHHHHHHHHHHHHCCC-EEEEECCCCHHHH---CCCCHHHHHHHHCC
Q ss_conf 999999740--31-020544445317-5---069999999999885698-7999648756761---36303457653021
Q gi|254780627|r 251 LNLKDSLRN--ID-LLLIDDMQFLQG-K---LIQHEFCHLLNSLLDSAK-QVVAAADRPPSEL---ESLDPRIRSRLQGG 319 (502)
Q Consensus 251 ~~fr~~~r~--~D-vLliDDiqfl~g-k---~tqee~f~~~n~l~~~gk-qiv~tsd~~P~~l---~~l~~rL~SR~~~G 319 (502)
+++-+.... -+ +++||++|-+.+ + .....|.++++++.+..+ .+|+|+. ....+ -.-...|..|..
T Consensus 98 ~~~~~~l~~~~~~~iiviDEfq~l~~~~~~~~~~~~l~~~~d~~~~~~~~~~I~~GS-~~~~m~~~~~~~~plygR~~-- 174 (223)
T pfam01637 98 TLLFELLKRKGKKIAIIIDEVQYAIGLNGAESYVKLLLNLIDYPPKEYHLIVVLCGS-SEGLTIELLDYKSPLYGRHR-- 174 (223)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHCCCCCCCCCCC--
T ss_conf 999999985599659997016776402443059999999999752457758999727-19999998620565357502--
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 15775158889999999999988643116897898999999850278889999
Q gi|254780627|r 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 (502)
Q Consensus 320 l~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Le 372 (502)
...|.|-+.++-...++... ++.+..++++.++.+-..+.|..+-|+
T Consensus 175 -~i~l~p~~~~~~~efl~~~f-----~e~~~~~~~~~~~~iy~~~gG~P~yL~ 221 (223)
T pfam01637 175 -WALLKPFDFETAWNFLREGF-----EELYEPGPKEEFEEVWRLLGGNPGYLE 221 (223)
T ss_pred -EEEECCCCHHHHHHHHHHHH-----HHHCCCCCHHHHHHHHHHHCCHHHHHH
T ss_conf -27726899899999999999-----984789998999999999698389984
No 89
>KOG2028 consensus
Probab=98.33 E-value=2.5e-05 Score=57.91 Aligned_cols=241 Identities=19% Similarity=0.226 Sum_probs=138.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH-HHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCC
Q ss_conf 54898627888857999999999986306881686469888-99999998619889999997403102054444531750
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF-MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F-~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~ 275 (502)
+-+.++|++|.|||-|.+-|++..... .-+.+-++|-.= +++.-..+..- ...+...+.--||.||.||.| +|.
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~--SyrfvelSAt~a~t~dvR~ife~a--q~~~~l~krkTilFiDEiHRF-Nks 237 (554)
T KOG2028 163 PSMILWGPPGTGKTTLARLIASTSKKH--SYRFVELSATNAKTNDVRDIFEQA--QNEKSLTKRKTILFIDEIHRF-NKS 237 (554)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCC--CEEEEEEECCCCCHHHHHHHHHHH--HHHHHHHCCEEEEEEHHHHHH-HHH
T ss_conf 705886699876588999998605777--427999741456618899999998--878765244069873776553-232
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECC-CCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHH-HHCC-----
Q ss_conf 699999999998856987999648-756761363034576530211577515888999999999998864-3116-----
Q gi|254780627|r 276 IQHEFCHLLNSLLDSAKQVVAAAD-RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ-KEDP----- 348 (502)
Q Consensus 276 tqee~f~~~n~l~~~gkqiv~tsd-~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~-~~~~----- 348 (502)
-|+-|+-. .++|--+.|-+. --|+ -.|..-|+||+ .|.-+++-..+.-..||.+-++.-. .+..
T Consensus 238 QQD~fLP~----VE~G~I~lIGATTENPS--Fqln~aLlSRC---~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~ 308 (554)
T KOG2028 238 QQDTFLPH----VENGDITLIGATTENPS--FQLNAALLSRC---RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLP 308 (554)
T ss_pred HHHCCCCE----ECCCCEEEEECCCCCCC--CCHHHHHHHCC---CEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 11003421----30670699853668976--01127787316---06673368889999999999876321025688999
Q ss_pred --CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH---H-HCC-----CCCHHHHHHHHHHHH-CCCCCCCCCHHHHHH
Q ss_conf --8978989999998502788899999999999986---3-024-----687788999998763-037887579899999
Q gi|254780627|r 349 --KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH---S-FAP-----ILTAEIADELLSHLV-NTGETKKMRIEDIQR 416 (502)
Q Consensus 349 --~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~---~-~~~-----~~~~~~~~~~l~~~~-~~~~~~~i~~~~I~~ 416 (502)
.+.+++.+++|||....++-|. |||-|-... . -.+ .++++.+++.|..-- -.......--+.|-
T Consensus 309 n~s~~ve~siidyla~lsdGDaR~---aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntIS- 384 (554)
T KOG2028 309 NSSMFVEDSIIDYLAYLSDGDARA---ALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTIS- 384 (554)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCCEECCCCHHHHHHHH-
T ss_conf 831245688999998704731888---8778999999887524776564002888999985312000455305778999-
Q ss_pred HHHHHHCCCHHHHHCCCCCHHH-CHHHHH-----HHHHHHHHCCCCHHHHHH
Q ss_conf 9999809999994088877401-445799-----999999851568789998
Q gi|254780627|r 417 MVAKHYNISRNDLLSNRRVRTV-VRPRQV-----AMYLSKIMTPRSFPEIGR 462 (502)
Q Consensus 417 ~V~~~~~i~~~~l~s~~R~~~i-~~~Rqi-----amyL~r~~t~~s~~~IG~ 462 (502)
+. ++.++|.-....+ -.||++ -.|.+|.+....-.+||-
T Consensus 385 A~-------HKSmRG~D~nAslY~LaRMLegGEdPLYVARRlvR~ASEDIGl 429 (554)
T KOG2028 385 AL-------HKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGL 429 (554)
T ss_pred HH-------HHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 99-------8760177655279999999716887079999999875103376
No 90
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=3.5e-05 Score=56.86 Aligned_cols=211 Identities=15% Similarity=0.152 Sum_probs=120.0
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH---HHHHH
Q ss_conf 887632886147899999999824100136555554898627888857999999999986306881686469---88899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA---EYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~---e~F~~ 239 (502)
+|+..| |..-- ..+-..++.. |+.. .-....|.-|+|||-+-.-++..+.-..+-..--|-.+ ....+
T Consensus 14 ~f~e~v-GQ~~v-~~~l~nal~~--~rl~-----haylf~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~~C~~i~~ 84 (816)
T PRK07003 14 DFASLV-GQEHV-VRALTHALDG--GRLH-----HAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDE 84 (816)
T ss_pred CHHHHC-CCHHH-HHHHHHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 576623-84999-9999999970--9863-----1475117898888899999999867899999897877555787755
Q ss_pred ----HH--HHHHHCCCHHHHHHHHH---------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf ----99--99986198899999974---------0310205444453175069999999999885698799964875676
Q gi|254780627|r 240 ----RF--ASAIRDNCALNLKDSLR---------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 240 ----~~--~~a~~~~~~~~fr~~~r---------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
++ ++|-.+..+++-|+-.. ..-|.|||.+|.|+. ...+-|+-|+.+--.+-|-|.-|.| |..
T Consensus 85 g~~~d~iEiDaAS~~~vd~~r~l~~~~~y~p~~~r~KvyiiDEvHmls~-~afnalLKtlEepP~hv~FilaTTd--~~k 161 (816)
T PRK07003 85 GRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-HAFNAMLKTLEEPPPHVKFILATTD--PQK 161 (816)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCH-HHHHHHHHHHCCCCCCEEEEEECCC--HHH
T ss_conf 8877547863554357689999998622478667447999841543399-9999999840379866489995588--011
Q ss_pred HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
+..-+.||+.. ..+.+-+.+.-..-|.+- ...+++..+++.+.+||+.-.|++|+-...+.+.+++..
T Consensus 162 ---~p~tilSRc~~---f~l~~~~~~~i~~~l~~i-----~~~E~i~~e~~al~lia~~a~GsmRDalsl~dQaia~~~- 229 (816)
T PRK07003 162 ---IPVTVLSRCLQ---FNLKQMPAGHIVSHLERI-----LGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA- 229 (816)
T ss_pred ---CCHHHHHHHHH---CCCCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-
T ss_conf ---52889877765---223679999999999999-----998299779999999999767737888859999998469-
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24687788999998
Q gi|254780627|r 385 APILTAEIADELLS 398 (502)
Q Consensus 385 ~~~~~~~~~~~~l~ 398 (502)
+.++.+.++..|+
T Consensus 230 -g~~~~~~v~~mLG 242 (816)
T PRK07003 230 -NEVTETAVSGMLG 242 (816)
T ss_pred -CCCCHHHHHHHHC
T ss_conf -9737999999858
No 91
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=1.7e-05 Score=59.00 Aligned_cols=212 Identities=15% Similarity=0.119 Sum_probs=124.5
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCC--EEEEEHHHHHH
Q ss_conf 8876328861478999999998241001365555548986278888579999999999863-06881--68646988899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR-QPNLR--VVYLTAEYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~-~~~~~--v~y~~~e~F~~ 239 (502)
+|+. |+|..-- .-.--.+|.. |+.. .=.+++|+-|+|||-+-..++..+.-. .|... -.|-++.++.+
T Consensus 13 ~F~e-viGQe~v-~~~L~~Ai~~--gri~-----HAYLFsGprG~GKTt~ARilAkaLNC~~~~~~~PCg~C~sC~~i~~ 83 (775)
T PRK07764 13 TFAE-VVGQEHV-TEPLSTALDS--GRIN-----HAYLFSGPRGCGKTSSARILARSLNCAQGPTSTPCGVCDSCVALAP 83 (775)
T ss_pred CHHH-HCCCHHH-HHHHHHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 7666-2285999-9999999981--9976-----3376237888788899999999966899999898888763788863
Q ss_pred ------HH--HHHHHCCCHHHHHHH-----HH----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf ------99--999861988999999-----74----03102054444531750699999999998856987999648756
Q gi|254780627|r 240 ------RF--ASAIRDNCALNLKDS-----LR----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 (502)
Q Consensus 240 ------~~--~~a~~~~~~~~fr~~-----~r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P 302 (502)
++ +++-.++.+++.|+- |+ ..-|.|||.+|.|. +...+-|+-|+.+=-.+-+-|..|.+ |
T Consensus 84 g~~~~~DviEiDAAS~~gVddiReL~e~~~y~P~~~ryKVyIIDEaHmls-~~afNALLKtLEEPP~hvvFIlaTTe--p 160 (775)
T PRK07764 84 GGPGSLDVVEIDAASHGGVDDARELRERAFFAPAQSRYRIFIIDEAHMVT-TAGFNALLKIVEEPPEHLIFIFATTE--P 160 (775)
T ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHC-HHHHHHHHHHHCCCCCCEEEEEECCC--H
T ss_conf 89888866873156556889999999854768767863599985354407-99999998862278646279995487--3
Q ss_pred HHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 76136303457653021157751588899999999999886431168978989999998502788899999999999986
Q gi|254780627|r 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 (502)
Q Consensus 303 ~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~ 382 (502)
. .+..-++||.+.=---.|. .+.-...|++- .+.+++.++++++..|++.-.+++|+-.+.|.+|++.+
T Consensus 161 ~---kip~TI~SRcq~f~Fr~i~---~~~~~~~l~~i-----~~~E~i~~~~~al~li~r~~~Gs~RDalS~ldQl~a~~ 229 (775)
T PRK07764 161 E---KVIGTIRSRTHHYPFRLVP---PGTMRPYLERI-----CAQEGVVVDDAVLPLVIRAGGGSPRDTLSVLDQLLAGA 229 (775)
T ss_pred H---HCCHHHHHHCCCCCCCCCC---HHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 5---4716776410234526699---99999999999-----99839987989999999982896676899999998404
Q ss_pred HHCCCCCHHHHHHHHH
Q ss_conf 3024687788999998
Q gi|254780627|r 383 SFAPILTAEIADELLS 398 (502)
Q Consensus 383 ~~~~~~~~~~~~~~l~ 398 (502)
. .+.++.+.+..+|.
T Consensus 230 ~-~~~v~~~~a~~llG 244 (775)
T PRK07764 230 G-DDGVTYERAVALLG 244 (775)
T ss_pred C-CCCEEHHHHHHHHC
T ss_conf 8-88410999999858
No 92
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.29 E-value=5.8e-05 Score=55.28 Aligned_cols=176 Identities=19% Similarity=0.272 Sum_probs=113.7
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHC-C----CCCEEEEEHHHHHHHH
Q ss_conf 3288614789999999982410013655555489862788885799999999998630-6----8816864698889999
Q gi|254780627|r 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ-P----NLRVVYLTAEYFMWRF 241 (502)
Q Consensus 167 FVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~-~----~~~v~y~~~e~F~~~~ 241 (502)
-|+|-.+++- .+.+-.++- .-.||+ +-|.+|+|||-+..+++..+.+.. | +++|+-+.-- .+
T Consensus 179 pvIGRd~EI~-----r~i~IL~RR---~KNNpi-LvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~I~~LDlg----~L 245 (857)
T PRK10865 179 PVIGRDEEIR-----RTIQVLQRR---TKNNPV-LIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG----AL 245 (857)
T ss_pred CCCCCHHHHH-----HHHHHHHCC---CCCCCE-EECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHH----HH
T ss_conf 8858299999-----999997025---789975-8789998899999999999983899978816902473388----78
Q ss_pred HHHHH-CCCHHH-HHHHHHH------CCHHHHHHHHHHCCC-C--HHHHHHHHHHHHHHCCCEEEEECCCCHHHHC-CC-
Q ss_conf 99986-198899-9999740------310205444453175-0--6999999999988569879996487567613-63-
Q gi|254780627|r 242 ASAIR-DNCALN-LKDSLRN------IDLLLIDDMQFLQGK-L--IQHEFCHLLNSLLDSAKQVVAAADRPPSELE-SL- 308 (502)
Q Consensus 242 ~~a~~-~~~~~~-fr~~~r~------~DvLliDDiqfl~gk-~--tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~-~l- 308 (502)
+.+-+ .|..++ ++.-... -=+|-||+||.+-|- . -..-..+++.-...+|.-=++.+-. |.+-. .+
T Consensus 246 ~AGakyRGeFEeRLk~il~ev~~~~~~iILFIDEiHtlvGaG~~~G~~DaaNlLKPaLaRGelr~IGATT-~~EYrk~iE 324 (857)
T PRK10865 246 VAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATT-LDEYRQYIE 324 (857)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC-HHHHHHHCC
T ss_conf 6147652117999999999998478986999734354336887777534788867887379854999458-999998713
Q ss_pred -CHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf -0345765302115775158889999999999988643116897898999999
Q gi|254780627|r 309 -DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 (502)
Q Consensus 309 -~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~l 360 (502)
+.-|.-||+ .+.|++|+.|.-+.||+-- ........++.++++++...
T Consensus 325 kD~AL~RRFq---~V~V~EPs~e~ti~ILrgl-~~~yE~hH~V~itdeAl~aA 373 (857)
T PRK10865 325 KDAALERRFQ---KVFVAEPSVEDTIAILRGL-KERYELHHHVQITDPAIVAA 373 (857)
T ss_pred CCHHHHHHCC---CCCCCCCCHHHHHHHHHHH-HHHHHHCCCCEECHHHHHHH
T ss_conf 4588998537---1006899879999999988-88998737915879999999
No 93
>KOG0734 consensus
Probab=98.29 E-value=3.6e-05 Score=56.78 Aligned_cols=176 Identities=25% Similarity=0.322 Sum_probs=121.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHH-HHH-HHHHHCCHHHHHHHHHHCCCCH
Q ss_conf 89862788885799999999998630688168646988899999998619889-999-9974031020544445317506
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL-NLK-DSLRNIDLLLIDDMQFLQGKLI 276 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~-~fr-~~~r~~DvLliDDiqfl~gk~t 276 (502)
..+-||+|.|||-|..||+-|. +.-.+|.+.-+|-.-| -+...+.+. -|+ .|-|.--+.-||.|.-+.||+.
T Consensus 340 VLLvGPPGTGKTlLARAvAGEA-----~VPFF~~sGSEFdEm~-VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~ 413 (752)
T KOG0734 340 VLLVGPPGTGKTLLARAVAGEA-----GVPFFYASGSEFDEMF-VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRN 413 (752)
T ss_pred EEEECCCCCCHHHHHHHHHCCC-----CCCEEECCCCCHHHHH-HCCCHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCC
T ss_conf 3876899975569999860556-----8974741662044542-201489999999998734985999720022056678
Q ss_pred ---HHHHHHHHHHH-------HHCCCEEEEECCCCHHHHCCCCHHHH--HHHHCCEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf ---99999999998-------85698799964875676136303457--6530211577515888999999999998864
Q gi|254780627|r 277 ---QHEFCHLLNSL-------LDSAKQVVAAADRPPSELESLDPRIR--SRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 (502)
Q Consensus 277 ---qee~f~~~n~l-------~~~gkqiv~tsd~~P~~l~~l~~rL~--SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~ 344 (502)
|.--=+|+|.| .++.+-||+.+..-|..|+ .-|. .||-. .+-+..||..-|..||+..+.
T Consensus 414 ~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD---~AL~RPGRFD~--~v~Vp~PDv~GR~eIL~~yl~--- 485 (752)
T KOG0734 414 PSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD---KALTRPGRFDR--HVTVPLPDVRGRTEILKLYLS--- 485 (752)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHH---HHHCCCCCCCE--EEECCCCCCCCHHHHHHHHHH---
T ss_conf 6277899989999999842867688669995168745556---87348875533--674689773328999999983---
Q ss_pred HHCCCCCCCHHH-HHHHHHHCCC-CHHHHHHHHHHHHHHHHHCCC--CCHHH
Q ss_conf 311689789899-9999850278-889999999999998630246--87788
Q gi|254780627|r 345 KEDPKLNINEEV-LMHVARTVTT-SGRELDGAFNQLVFRHSFAPI--LTAEI 392 (502)
Q Consensus 345 ~~~~~~~l~~~v-~~~la~~~~~-~vR~Legal~~l~~~~~~~~~--~~~~~ 392 (502)
++.++++| ...||....+ +--+|+-.+|.-..+|...+. +++..
T Consensus 486 ----ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~ 533 (752)
T KOG0734 486 ----KIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKH 533 (752)
T ss_pred ----CCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf ----487656778767226889876578998888999999863740110887
No 94
>KOG0737 consensus
Probab=98.28 E-value=5.4e-05 Score=55.50 Aligned_cols=207 Identities=24% Similarity=0.334 Sum_probs=118.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH--HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCC-CC
Q ss_conf 8986278888579999999999863068816864698889--99999986198899999974031020544445317-50
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM--WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KL 275 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~--~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~g-k~ 275 (502)
..+|||+|.|||-|-.|++.+.-...-+..+--++..-|. ..++.|+ -.|-.|+.-+ ++-||-|..+-| ++
T Consensus 130 iLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~Av-----FslAsKl~P~-iIFIDEvds~L~~R~ 203 (386)
T KOG0737 130 ILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAV-----FSLASKLQPS-IIFIDEVDSFLGQRR 203 (386)
T ss_pred CEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHH-----HHHHHHCCCC-EEEHHHHHHHHHHCC
T ss_conf 0511899821889999999872797100013655326677788899999-----8206534861-565665888986404
Q ss_pred -H--------HHHHHHHHHHHHHCCC--EEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf -6--------9999999999885698--7999648756761363034576530211577515888999999999998864
Q gi|254780627|r 276 -I--------QHEFCHLLNSLLDSAK--QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 (502)
Q Consensus 276 -t--------qee~f~~~n~l~~~gk--qiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~ 344 (502)
+ -.||-.+.+-|..++. -+|+.+-.-|. .|+++.+.||-- ...|.-|+.+-|.+||+--++...
T Consensus 204 s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~---DlDeAiiRR~p~--rf~V~lP~~~qR~kILkviLk~e~ 278 (386)
T KOG0737 204 STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPF---DLDEAIIRRLPR--RFHVGLPDAEQRRKILKVILKKEK 278 (386)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC---CHHHHHHHHCCC--EEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 642799999999999986164678871599970799984---378999984764--365379844449999999942434
Q ss_pred HHCCCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHHCCC------CCCCCCHHH
Q ss_conf 3116897898999999850278-889999999999998630246877----88999998763037------887579899
Q gi|254780627|r 345 KEDPKLNINEEVLMHVARTVTT-SGRELDGAFNQLVFRHSFAPILTA----EIADELLSHLVNTG------ETKKMRIED 413 (502)
Q Consensus 345 ~~~~~~~l~~~v~~~la~~~~~-~vR~Legal~~l~~~~~~~~~~~~----~~~~~~l~~~~~~~------~~~~i~~~~ 413 (502)
.+ +++.+ +-+.-+.+.++| ++++ +.+..++......+.. ..-..++.+..... ..++++.++
T Consensus 279 ~e-~~vD~--~~iA~~t~GySGSDLke----lC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eD 351 (386)
T KOG0737 279 LE-DDVDL--DEIAQMTEGYSGSDLKE----LCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQED 351 (386)
T ss_pred CC-CCCCH--HHHHHHCCCCCHHHHHH----HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHH
T ss_conf 68-77698--88887608986778999----9998767689999985135101666653035775322321337662889
Q ss_pred HHHHHHHHHC
Q ss_conf 9999999809
Q gi|254780627|r 414 IQRMVAKHYN 423 (502)
Q Consensus 414 I~~~V~~~~~ 423 (502)
..++....+.
T Consensus 352 f~~a~~~v~~ 361 (386)
T KOG0737 352 FPKAINRVSA 361 (386)
T ss_pred HHHHHHHHHH
T ss_conf 9988875315
No 95
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=0.00013 Score=52.86 Aligned_cols=211 Identities=17% Similarity=0.191 Sum_probs=123.0
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEE---EEEHHH---
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630688168---646988---
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV---YLTAEY--- 236 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~---y~~~e~--- 236 (502)
+|+..| |..- ...+-..++.. |+.. .-..+.|.-|+|||-+-.-++-.+.-..+...-- |-++.+
T Consensus 14 ~f~~~v-gq~~-v~~~l~~a~~~--~r~~-----haylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~~ 84 (696)
T PRK06872 14 TFSEVV-GQEH-ILTALSNGLKE--NRLH-----HAYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCKAIEE 84 (696)
T ss_pred CHHHHC-CCHH-HHHHHHHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 564523-8599-99999999971--9863-----0475117898888899999999867899999997888622576744
Q ss_pred --HHHHH-HHHHHCCCHHHHHHHHHH---------CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf --89999-999861988999999740---------310205444453175069999999999885698799964875676
Q gi|254780627|r 237 --FMWRF-ASAIRDNCALNLKDSLRN---------IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 237 --F~~~~-~~a~~~~~~~~fr~~~r~---------~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
|..-+ ++|-.+..+++-|+-..+ .-|.|||.+|.|+. ...+-|+-|+.+==.+=|=|..|.| |..
T Consensus 85 g~~~d~~eidaas~~~v~~~r~l~~~~~~~p~~~~~kvy~idevhmls~-~~fnallktleepp~~v~f~latt~--~~k 161 (696)
T PRK06872 85 GNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLIDEVHMLSR-HSFNALLKTLEEPPEYVKFLLATTD--PQK 161 (696)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCH-HHHHHHHHHHCCCCCCEEEEEECCC--HHH
T ss_conf 7877546750565578899999998454577677547999700544389-9999998750279754489984386--322
Q ss_pred HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
+..-..||+ +...+..-+.+.-..-|++- ...+++..+++.+..||..-.|++|+--..+.+.+++.
T Consensus 162 ---~p~tilsrc---~~f~~~~~~~~~i~~~l~~i-----~~~e~~~~~~~al~~~a~~a~gs~rdalsl~dqai~~~-- 228 (696)
T PRK06872 162 ---LPITILSRC---MQFHLKALDQTQIAQHLEFI-----LTQENIPFESPALEKLAKAAQGSIRDSLSLTDQAIAMS-- 228 (696)
T ss_pred ---CCHHHHHHH---HHEECCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--
T ss_conf ---748898766---53002689999999999999-----99849977999999999975895677888999999975--
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24687788999998
Q gi|254780627|r 385 APILTAEIADELLS 398 (502)
Q Consensus 385 ~~~~~~~~~~~~l~ 398 (502)
++.++.+.+...|+
T Consensus 229 ~g~~~~~~v~~mlg 242 (696)
T PRK06872 229 NANITLDVVSNMLG 242 (696)
T ss_pred CCCCCHHHHHHHHC
T ss_conf 89616999999858
No 96
>CHL00181 cbbX CbbX; Provisional
Probab=98.26 E-value=7.7e-05 Score=54.40 Aligned_cols=173 Identities=17% Similarity=0.214 Sum_probs=112.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH--CCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHH--CCHHHHHHHHHHCC
Q ss_conf 48986278888579999999999863--068816864698889999999861988999999740--31020544445317
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKR--QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN--IDLLLIDDMQFLQG 273 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~--~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~--~DvLliDDiqfl~g 273 (502)
-+.+.|++|.|||.....+|.-+... -+.-.++-++..+|...|+-.-- ..-++...+ =-||.||+-.-|..
T Consensus 61 h~vF~GnPGTGKTTVARl~a~il~~lG~L~~g~vve~~r~dLvg~yvG~Ta----~kt~~~i~~a~GGVLfIDEAY~L~~ 136 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYRLGYIKKGHLITVTRDDLVGQYIGHTA----PKTKEVLKKAMGGVLFIDEAYYLYK 136 (287)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHCCCCCCCCH----HHHHHHHHHCCCCEEEEECHHHHCC
T ss_conf 388878998679999999999999869955895899535884163535216----9999999964598799824465357
Q ss_pred C----C-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCC---CHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5----0-699999999998856987999648756761363---0345765302115775158889999999999988643
Q gi|254780627|r 274 K----L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESL---DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 (502)
Q Consensus 274 k----~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l---~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~ 345 (502)
. . -+|-+=.+...+-+....+|+---.+|.++..| .+.|.|||.+-+ ..+.=+.+.-..|++.++.
T Consensus 137 ~~~~~dfg~eaidtLl~~me~~~~~lvvI~AGY~~eM~~fl~~NpGL~sRf~~~i--~F~dYt~~EL~~I~~~~~~---- 210 (287)
T CHL00181 137 PDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRVANHV--DFPDYTPEELLQIAKMMLE---- 210 (287)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCHHHHCCCEE--ECCCCCHHHHHHHHHHHHH----
T ss_conf 8899983799999999998707998899984678999999985904787688723--7798599999999999999----
Q ss_pred HCCCCCCCHHHHH----HHHHHCC----CCHHHHHHHHHHHHHH
Q ss_conf 1168978989999----9985027----8889999999999998
Q gi|254780627|r 346 EDPKLNINEEVLM----HVARTVT----TSGRELDGAFNQLVFR 381 (502)
Q Consensus 346 ~~~~~~l~~~v~~----~la~~~~----~~vR~Legal~~l~~~ 381 (502)
..++.+++++.. ++..+.. +|.|..+-.+-+....
T Consensus 211 -~~~~~l~~~a~~~l~~~~~~~~~~~~FGNaR~vrnl~e~a~~~ 253 (287)
T CHL00181 211 -EQQYQLTPEAEKVLLDYIKRRMEQPLFANARSVRNAIDRARMR 253 (287)
T ss_pred -HCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf -8698258799999999999850899987489999999999999
No 97
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.24 E-value=6.5e-05 Score=54.93 Aligned_cols=228 Identities=18% Similarity=0.245 Sum_probs=134.9
Q ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHHC-CCCCCCCCCCCE---EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 6447887632886147899999999824-100136555554---898627888857999999999986306881686469
Q gi|254780627|r 159 DSRFVFSTFIEGSSNRVALTAAQSIAEV-DSHGYTTVRLNP---LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 (502)
Q Consensus 159 NpryTFDnFVVG~sN~lA~aAAkaVAe~-pg~~~~~~~~NP---Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~ 234 (502)
|-.-....-|+|.....- +.|.+|-.. -|-.- +--| ++..||+|+|||-|..+++..+... +..++.+.-
T Consensus 561 ~le~~L~~rViGQd~AI~-~v~~aI~~sraGL~d---p~rPiGsFLFlGPTGVGKTElAK~LA~~LF~~--e~~liriDM 634 (857)
T PRK10865 561 RMEQELHHRVIGQNEAVE-AVSNAIRRSRAGLSD---PNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDM 634 (857)
T ss_pred HHHHHHHHHHCCHHHHHH-HHHHHHHHHHCCCCC---CCCCEEEEEEECCCCCCHHHHHHHHHHHHHCC--HHHEEEECC
T ss_conf 999999878528099999-999999998638999---99973899986898788899999999998389--334256253
Q ss_pred HHHHHHHHHHHHCCC---------HHHHHHHH--HHCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHHCC-C-------E
Q ss_conf 888999999986198---------89999997--40310205444453175069999999999--88569-8-------7
Q gi|254780627|r 235 EYFMWRFASAIRDNC---------ALNLKDSL--RNIDLLLIDDMQFLQGKLIQHEFCHLLNS--LLDSA-K-------Q 293 (502)
Q Consensus 235 e~F~~~~~~a~~~~~---------~~~fr~~~--r~~DvLliDDiqfl~gk~tqee~f~~~n~--l~~~g-k-------q 293 (502)
-+|+....-+---|. .-.+-+.. +-.-|+|+|.|.- +.....+-|+++|+. |.+.. + -
T Consensus 635 SEy~E~hsVSrLiGaPPGYVGy~eGG~LTeaVRr~PySVvLfDEIEK-AHpdV~nilLQvlD~G~LtD~~Gr~vdF~NtI 713 (857)
T PRK10865 635 SEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEK-AHPDVFNILLQVLDDGRLTDGQGRTVDFRNTV 713 (857)
T ss_pred HHHCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEHHHHH-HCHHHHHHHHHHHCCCEEECCCCCEEEEEEEE
T ss_conf 32113012767558998766757788110999819877886325766-38589999998703683207999888513348
Q ss_pred EEEECCCCHHHH---------------------CCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHH--HC--C
Q ss_conf 999648756761---------------------3630345765302115775158889999999999988643--11--6
Q gi|254780627|r 294 VVAAADRPPSEL---------------------ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK--ED--P 348 (502)
Q Consensus 294 iv~tsd~~P~~l---------------------~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~--~~--~ 348 (502)
||+||.---..+ ..|.+.+..|+-. ++.-.|-+.+.-.+|+...+..-.. .. -
T Consensus 714 IImTSN~Gs~~i~~~~~~~~~~~~~~~~~~~l~~~F~PEFlnRiD~--iv~F~pL~~~~l~~Iv~~~l~~l~~rL~~~~i 791 (857)
T PRK10865 714 VIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDE--VVVFHPLGEQHIASIAQIQLQRLYKRLEERGY 791 (857)
T ss_pred EEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCE--EEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9964623369998650655668899999999986479888823784--89827899999999999999999999997798
Q ss_pred CCCCCHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
Q ss_conf 8978989999998502788---8999999999999863024687788999998763037
Q gi|254780627|r 349 KLNINEEVLMHVARTVTTS---GRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTG 404 (502)
Q Consensus 349 ~~~l~~~v~~~la~~~~~~---vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 404 (502)
.+.+++++.+||+++..+. .|.|..++.+.+ .-.+++.+|..-+..+
T Consensus 792 ~l~~~~~a~~~l~~~gyd~~~GARpl~r~I~~~i---------~~~ls~~il~g~~~~g 841 (857)
T PRK10865 792 EIHISDEALKLLSENGYDPVYGARPLKRAIQQQI---------ENPLAQQILSGELVPG 841 (857)
T ss_pred EEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHH---------HHHHHHHHHCCCCCCC
T ss_conf 4998889999999848897747137899999998---------8999999972888996
No 98
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.22 E-value=4.6e-06 Score=63.09 Aligned_cols=102 Identities=19% Similarity=0.167 Sum_probs=66.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH-------------HCCCHHHHHHHHHH--CC
Q ss_conf 5489862788885799999999998630688168646988899999998-------------61988999999740--31
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI-------------RDNCALNLKDSLRN--ID 261 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~-------------~~~~~~~fr~~~r~--~D 261 (502)
+.++|+|++|.|||.|++++++.+.... ..++|++++.......... +........+..+. .+
T Consensus 3 ~~ill~G~~GsGKTtl~~~la~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD 80 (148)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCC--CCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 7899999997029999999998726689--96899875998988898765300011221051999999999999844998
Q ss_pred HHHHHHHHHHCCCCHHHHHH------HHHHHHHHCCCEEEEECCC
Q ss_conf 02054444531750699999------9999988569879996487
Q gi|254780627|r 262 LLLIDDMQFLQGKLIQHEFC------HLLNSLLDSAKQVVAAADR 300 (502)
Q Consensus 262 vLliDDiqfl~gk~tqee~f------~~~n~l~~~gkqiv~tsd~ 300 (502)
++++|+++.+.....+.... -..-.....+..+|.++..
T Consensus 81 viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~n~ 125 (148)
T smart00382 81 VLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf 999827502147620799999999998517657899899995699
No 99
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.21 E-value=0.00012 Score=52.99 Aligned_cols=233 Identities=15% Similarity=0.250 Sum_probs=142.1
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHH------CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 7644788763288614789999999982------4100136555554898627888857999999999986306881686
Q gi|254780627|r 158 LDSRFVFSTFIEGSSNRVALTAAQSIAE------VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 (502)
Q Consensus 158 LNpryTFDnFVVG~sN~lA~aAAkaVAe------~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y 231 (502)
+|-.-....-|+|...... +.|.+|-. +|.++- --++..||+|+|||.|..+++..+... +..++-
T Consensus 558 ~~le~~L~~~ViGQ~~Av~-~v~~ai~~sraGl~d~~rPi-----gsFLFlGPTGVGKTElAK~LA~~LFg~--e~~liR 629 (852)
T TIGR03345 558 LSLPDRLAERVIGQDHALE-AIAERIRTARAGLEDPRKPL-----GVFLLVGPSGVGKTETALALAELLYGG--EQNLIT 629 (852)
T ss_pred HHHHHHHHHHHCCHHHHHH-HHHHHHHHHHCCCCCCCCCC-----EEEEEECCCCCCHHHHHHHHHHHHCCC--CCCEEE
T ss_conf 8679999999728499999-99999999871799999985-----689987899877899999999997198--611478
Q ss_pred EEHHHHHHHHHHHHHCCC---------HHHHHHHH--HHCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHHC--------
Q ss_conf 469888999999986198---------89999997--40310205444453175069999999999--8856--------
Q gi|254780627|r 232 LTAEYFMWRFASAIRDNC---------ALNLKDSL--RNIDLLLIDDMQFLQGKLIQHEFCHLLNS--LLDS-------- 290 (502)
Q Consensus 232 ~~~e~F~~~~~~a~~~~~---------~~~fr~~~--r~~DvLliDDiqfl~gk~tqee~f~~~n~--l~~~-------- 290 (502)
+.--+|+....-+---|. .-.+-+.. +-.-|+|+|.|.- +.....+-|+++|+. |.+.
T Consensus 630 ~DMSEy~E~hsvsrLiGaPPGYVGy~eGG~LTe~Vrr~PysVvLfDEIEK-AHpdV~nilLQvlD~G~LtD~~Gr~vdF~ 708 (852)
T TIGR03345 630 INMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEK-AHPDVLELFYQVFDKGVMEDGEGREIDFK 708 (852)
T ss_pred ECCHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECHHHH-CCHHHHHHHHHHHCCCEEECCCCCEEECE
T ss_conf 42243210436878638999766748777210988809986888611300-28899999998724677757999988452
Q ss_pred CCEEEEECCCCHHHH-------------------------CCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH--
Q ss_conf 987999648756761-------------------------36303457653021157751588899999999999886--
Q gi|254780627|r 291 AKQVVAAADRPPSEL-------------------------ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS-- 343 (502)
Q Consensus 291 gkqiv~tsd~~P~~l-------------------------~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~-- 343 (502)
|--||+||.---..+ ..|.+.+..|+ - ++.-.|-+.+.-..|++..+..-
T Consensus 709 NtIIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFlnRi-~--ii~F~~L~~~~l~~Iv~~~l~~l~~ 785 (852)
T TIGR03345 709 NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRM-T--VIPYLPLDDDVLAAIVRLKLDRIAR 785 (852)
T ss_pred EEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCE-E--EEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 129997572447999864037655566899999999999834798886456-6--8973689999999999999999999
Q ss_pred -HHHC--CCCCCCHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf -4311--68978989999998502788---89999999999998630246877889999987630378875798
Q gi|254780627|r 344 -QKED--PKLNINEEVLMHVARTVTTS---GRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRI 411 (502)
Q Consensus 344 -~~~~--~~~~l~~~v~~~la~~~~~~---vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~ 411 (502)
.+++ -.+.+++++.+||++...+. -|.|..++.+. +.-.+++.+|..+......+.|++
T Consensus 786 rL~~~~~i~l~~~~~~~~~l~~~g~~~~~GARpl~r~I~~~---------i~~~la~~iL~~~~~g~~~~~i~~ 850 (852)
T TIGR03345 786 RLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQT---------LLPELSRQILERLAAGEPIERIHL 850 (852)
T ss_pred HHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHH---------HHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 99862896899889999999982899776864389999999---------889999999998708997248881
No 100
>KOG2227 consensus
Probab=98.19 E-value=6.8e-05 Score=54.81 Aligned_cols=226 Identities=18% Similarity=0.199 Sum_probs=137.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHH-------HH---HHHHHHHHCCC-----HHHHHHHHH---H
Q ss_conf 489862788885799999999998630688168646988-------89---99999986198-----899999974---0
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY-------FM---WRFASAIRDNC-----ALNLKDSLR---N 259 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~-------F~---~~~~~a~~~~~-----~~~fr~~~r---~ 259 (502)
-||+.|.+|.|||-+|+-+--......+...++|+.+.. |- ..+..-...+. +..|-+++. .
T Consensus 177 SlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~ 256 (529)
T KOG2227 177 SLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKF 256 (529)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 45751799865488999998740343166516998512354258899999888988742895047899999998752563
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHC-----CEEEEECCCCHHHHHH
Q ss_conf 31020544445317506999999999988569879996487567613630345765302-----1157751588899999
Q gi|254780627|r 260 IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG-----GVSVPLGLHDYEMRFS 334 (502)
Q Consensus 260 ~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~-----Gl~~~i~~Pd~e~r~~ 334 (502)
.=||.+|.+..|. .+.|.-++.+|.-=---+-.+|+.+-. +.| ++.||+..|+.. +.+.--.|=..+-...
T Consensus 257 ~~llVlDEmD~L~-tr~~~vLy~lFewp~lp~sr~iLiGiA--Nsl-DlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~ 332 (529)
T KOG2227 257 MLLLVLDEMDHLI-TRSQTVLYTLFEWPKLPNSRIILIGIA--NSL-DLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVE 332 (529)
T ss_pred EEEEEECHHHHHH-HCCCCEEEEEHHCCCCCCCEEEEEEEH--HHH-HHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHH
T ss_conf 3898721256776-046531432100136776605666400--135-577777666540257887466556878899999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH----HC----C
Q ss_conf 99999988643116897898999999850278---8899999999999986302468778899999876----30----3
Q gi|254780627|r 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTT---SGRELDGAFNQLVFRHSFAPILTAEIADELLSHL----VN----T 403 (502)
Q Consensus 335 Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~---~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~----~~----~ 403 (502)
||+.|+... .-..+-..++++.|..+.+ ++|.+--.+.+.+ ++++...+.+ .. .
T Consensus 333 Il~~rl~~~----~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai-----------EI~E~e~r~~~~~~l~~~~~p 397 (529)
T KOG2227 333 ILQQRLSEE----STSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI-----------EIAEIEKRKILDDPLSPGTSP 397 (529)
T ss_pred HHHHHHHCC----CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-----------HHHHHHHHHCCCCCCCCCCCC
T ss_conf 999997405----44333038999999986257612899999998788-----------999998741344678888885
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCHHHCHHHHHHHHHH
Q ss_conf 7887579899999999980999999408887740144579999999
Q gi|254780627|r 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 (502)
Q Consensus 404 ~~~~~i~~~~I~~~V~~~~~i~~~~l~s~~R~~~i~~~RqiamyL~ 449 (502)
...+.+.++.|..+.++.|+-+..+..- ++|+|=-+-||
T Consensus 398 ~~~~~v~~~~va~viSk~~~s~~~~s~~-------slplqqkiilc 436 (529)
T KOG2227 398 EKKKKVGVEHVAAVISKVDGSPSARSRE-------SLPLQQKIILC 436 (529)
T ss_pred CCCCCCCHHHHHHHHHHHCCCHHHHHHH-------HCCCCCCHHHH
T ss_conf 5455500678998840301680555554-------04766301578
No 101
>KOG2383 consensus
Probab=98.18 E-value=5.4e-06 Score=62.63 Aligned_cols=104 Identities=24% Similarity=0.304 Sum_probs=65.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHH---HHCCC---------------HHHHHHHH-H
Q ss_conf 48986278888579999999999863068816864698889999999---86198---------------89999997-4
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA---IRDNC---------------ALNLKDSL-R 258 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a---~~~~~---------------~~~fr~~~-r 258 (502)
-|||||++|.|||-||--.-..+-......|| +-.+||...-.- ++... ++-.-+.+ .
T Consensus 116 GlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRv---HFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eIa~ 192 (467)
T KOG2383 116 GLYLYGSVGCGKTMLMDLFYDALPPIWRKQRV---HFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEIAE 192 (467)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 68996356754467788776327840134440---399999999999999998416546553334667861789999855
Q ss_pred HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 03102054444531750699999999998856987999648756761
Q gi|254780627|r 259 NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 (502)
Q Consensus 259 ~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l 305 (502)
+.-+|++|.+|--- =.--.-|=-+|.+|..+|--+|.||.|+|.+|
T Consensus 193 ea~lLCFDEfQVTD-VADAmiL~rLf~~Lf~~GvVlvATSNR~P~dL 238 (467)
T KOG2383 193 EAILLCFDEFQVTD-VADAMILKRLFEHLFKNGVVLVATSNRAPEDL 238 (467)
T ss_pred HCEEEEECHHHHHH-HHHHHHHHHHHHHHHHCCEEEEEECCCCHHHH
T ss_conf 03034312010136-88999999999999738759998278985888
No 102
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.17 E-value=0.00026 Score=50.69 Aligned_cols=211 Identities=17% Similarity=0.142 Sum_probs=124.9
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH
Q ss_conf 76447887632886147899999999824100136555554898627888857999999999986306881686469888
Q gi|254780627|r 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 (502)
Q Consensus 158 LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F 237 (502)
.-....|+..| |.+..|=-.--+.-+-.|. -=|..|+|.+|+||++.-++|- ....+.++.-.+.+++-.+
T Consensus 71 ~~~~~~~~~LI-G~~~~~~~~~eqik~~ap~-------~~~vLi~GetGtGKel~A~~iH-~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 71 YLKSEALDDLI-GESPSLQELREQIKAYAPS-------GLPVLIIGETGTGKELFARLIH-ALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred HCCCHHHHHHH-CCCHHHHHHHHHHHHHCCC-------CCCEEEECCCCCCHHHHHHHHH-HHHHCCCCCCEEEEEHHHH
T ss_conf 10221566663-5688899999999861899-------9847986688753889999999-8612135898799777773
Q ss_pred HHHHHHHH----HCCCHHH-HHH---HH--HHCCHHHHHHHHHHCCCCHHHHHHHHHHHH----------HHCCCEEEEE
Q ss_conf 99999998----6198899-999---97--403102054444531750699999999998----------8569879996
Q gi|254780627|r 238 MWRFASAI----RDNCALN-LKD---SL--RNIDLLLIDDMQFLQGKLIQHEFCHLLNSL----------LDSAKQVVAA 297 (502)
Q Consensus 238 ~~~~~~a~----~~~~~~~-fr~---~~--r~~DvLliDDiqfl~gk~tqee~f~~~n~l----------~~~gkqiv~t 297 (502)
.+....+- .++...- +.. .+ -+=-.|.+|+||.+. ..-|+-+|..++.- ....-++|.+
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP-~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~A 220 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLP-PEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICA 220 (403)
T ss_pred CCCHHHHHHHCCCCCEEECCCCCCCCHHEECCCCEEEHHHHHHCC-HHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEEC
T ss_conf 767777777320000002566786764205279777656365379-8589999999871865766888886777404513
Q ss_pred CCCCHHH-H-CCCCHHHHHHHHCCEEEEECCCCHHHHHH----HHHHHHHHHHHHCCCCCC---C-HHHHHHHHHHCCCC
Q ss_conf 4875676-1-36303457653021157751588899999----999999886431168978---9-89999998502788
Q gi|254780627|r 298 ADRPPSE-L-ESLDPRIRSRLQGGVSVPLGLHDYEMRFS----ILKNRLAISQKEDPKLNI---N-EEVLMHVARTVTTS 367 (502)
Q Consensus 298 sd~~P~~-l-~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~----Il~~k~~~~~~~~~~~~l---~-~~v~~~la~~~~~~ 367 (502)
....+.+ + .| .-|..|+. +..|+-|.+..|.. .++.-+.. .+.+.+.++ + +-+..+++-...||
T Consensus 221 T~~~l~~~~~~g--~dl~~rl~---~~~I~LPpLrER~~Di~~L~e~Fl~~-~~~~l~~~~~~~~~~a~~~L~~y~~pGN 294 (403)
T COG1221 221 TTEDLEEAVLAG--ADLTRRLN---ILTITLPPLRERKEDILLLAEHFLKS-EARRLGLPLSVDSPEALRALLAYDWPGN 294 (403)
T ss_pred CCCCHHHHHHHH--CCHHHHHC---CCEECCCCHHHCHHHHHHHHHHHHHH-HHHHCCCCCCCCCHHHHHHHHHCCCCCC
T ss_conf 566879998740--52556416---75431897243555599999999999-9997399988888999999984889983
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 89999999999998630
Q gi|254780627|r 368 GRELDGAFNQLVFRHSF 384 (502)
Q Consensus 368 vR~Legal~~l~~~~~~ 384 (502)
||||+-.+-++.+.+..
T Consensus 295 irELkN~Ve~~~~~~~~ 311 (403)
T COG1221 295 IRELKNLVERAVAQASG 311 (403)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999997354
No 103
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=98.17 E-value=9.3e-05 Score=53.83 Aligned_cols=143 Identities=22% Similarity=0.395 Sum_probs=98.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH--HHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf 54898627888857999999999986306881686469888--9999999861988999999740310205444453175
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF--MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F--~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk 274 (502)
|...+||.-|.||+-|..|+-|+...+ +.+++=+.-++. ..+.+..++... . + =+|.+||+-|=++.
T Consensus 54 nnvLLwG~RGtGKSSlVKall~~~~~~--gLrlIEv~k~~L~~Lp~i~~~l~~~~-~----k----FIiF~DDLSFe~~d 122 (248)
T pfam05673 54 NNVLLWGARGTGKSSLVKALLNEYADQ--GLRLIEVDKDDLGDLPDIVDLLRGRP-Y----R----FILFCDDLSFEEGE 122 (248)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEECHHHHCCHHHHHHHHHCCC-C----C----EEEEECCCCCCCCC
T ss_conf 136767689898889999999986314--95699987888721999999996499-7----5----79996355767897
Q ss_pred CHHHHHHHHHHHHHHCC-------CEEEEECCCC---HH---------HH---CCCCHH--HHHHHHCCEEEEECCCCHH
Q ss_conf 06999999999988569-------8799964875---67---------61---363034--5765302115775158889
Q gi|254780627|r 275 LIQHEFCHLLNSLLDSA-------KQVVAAADRP---PS---------EL---ESLDPR--IRSRLQGGVSVPLGLHDYE 330 (502)
Q Consensus 275 ~tqee~f~~~n~l~~~g-------kqiv~tsd~~---P~---------~l---~~l~~r--L~SR~~~Gl~~~i~~Pd~e 330 (502)
.-|..+.++.+-| =.+..||.|- |. ++ ..++++ |.-|| ||++.-.+||-+
T Consensus 123 ----~~yk~LKs~LeG~l~~~p~NvliYaTSNRRHLi~e~~~d~~~~~ei~~~d~~eEklSLsDRF--GL~l~F~~~~q~ 196 (248)
T pfam05673 123 ----SSYKALKSVLEGGLEARPDNVLIYATSNRRHLIPEYMSDNEGDGEIHPGDAVEEKLSLSDRF--GLWLGFHPFDQD 196 (248)
T ss_pred ----HHHHHHHHHHCCCCCCCCCEEEEEEECCCHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHC--CEEEEECCCCHH
T ss_conf ----36999999965764468873899984270003633323477744367255777453489867--717850799999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 9999999999886431168978989999998
Q gi|254780627|r 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 (502)
Q Consensus 331 ~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la 361 (502)
+-++|++..+ ...++.++++-+.--|
T Consensus 197 ~YL~IV~~~~-----~~~~~~~~~e~l~~~A 222 (248)
T pfam05673 197 EYLAIVRGYA-----ARLGLPLDEEELRREA 222 (248)
T ss_pred HHHHHHHHHH-----HHCCCCCCHHHHHHHH
T ss_conf 9999999999-----9829999989999999
No 104
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=4.3e-05 Score=56.21 Aligned_cols=211 Identities=16% Similarity=0.173 Sum_probs=123.9
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCC------CE--EEEEH
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630688------16--86469
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL------RV--VYLTA 234 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~------~v--~y~~~ 234 (502)
+|+..| |..- ..-+-..++. .|+.. .-..+.|.-|+|||-+-.-++..+.-.+++. .- .|-++
T Consensus 14 ~F~~~v-GQ~~-v~~~l~na~~--~~r~~-----haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C 84 (721)
T PRK12323 14 DFTTLV-GQEH-VVRALTHALE--QQRLH-----HAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRAC 84 (721)
T ss_pred CHHHHC-CCHH-HHHHHHHHHH--CCCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 665532-8599-9999999997--19975-----4475027998889899999999976899866789878878776546
Q ss_pred HH-----HHHHH-HHHHHCCCHHHHHHHHHH---------CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 88-----89999-999861988999999740---------3102054444531750699999999998856987999648
Q gi|254780627|r 235 EY-----FMWRF-ASAIRDNCALNLKDSLRN---------IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 (502)
Q Consensus 235 e~-----F~~~~-~~a~~~~~~~~fr~~~r~---------~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd 299 (502)
.+ |..-+ ++|-.+..+++-|+-..+ .-|.|||.+|.|+. ..-+-|+-|+.+==.+-|=|..|.|
T Consensus 85 ~~i~~g~~~d~~EiDaas~~~v~~~r~l~~~~~y~P~~~~~KvyiiDevhmls~-~afnalLKtlEePP~hv~FilaTT~ 163 (721)
T PRK12323 85 TEIDAGRFVDYIEMDAASNRGVDEMAQLLDQAVYAPTAGRFKVYMIDEVHMLTN-HAFNAMLKTLEEPPPHVKFILATTD 163 (721)
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCH-HHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 877568987647743676788899999998545588766446999854000589-9999999840179755389994386
Q ss_pred CCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 75676136303457653021157751588899999999999886431168978989999998502788899999999999
Q gi|254780627|r 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 (502)
Q Consensus 300 ~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~ 379 (502)
|. .+..-+.||+. ..+...-+.+.-..-|++- ...+++..+++.+..||+.-.|++|+=...+.+.+
T Consensus 164 --~~---Kip~TilSRc~---~f~~~~~~~~~i~~~l~~i-----~~~E~i~~~~~al~~ia~~a~Gs~RDalslldQai 230 (721)
T PRK12323 164 --PQ---KIPVTVLSRCL---QFNLKQMPPGHIVSHLDAI-----LGQEGIGHEGNALRLLAQAAHGSMRDALSLTDQAI 230 (721)
T ss_pred --HH---HCCHHHHHHHH---HCCCCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf --34---48588987765---4234789999999999999-----99839977999999999975896476888999999
Q ss_pred HHHHHCCCCCHHHHHHHHH
Q ss_conf 9863024687788999998
Q gi|254780627|r 380 FRHSFAPILTAEIADELLS 398 (502)
Q Consensus 380 ~~~~~~~~~~~~~~~~~l~ 398 (502)
++.. +.++.+.+...|+
T Consensus 231 a~~~--g~~~~~~v~~mlg 247 (721)
T PRK12323 231 AYSA--GNVSEEAVRGMLG 247 (721)
T ss_pred HHCC--CCCCHHHHHHHHC
T ss_conf 8658--9626999999868
No 105
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=0.00026 Score=50.68 Aligned_cols=211 Identities=18% Similarity=0.217 Sum_probs=126.1
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC------CC--EEEEEH
Q ss_conf 8876328861478999999998241001365555548986278888579999999999863068------81--686469
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN------LR--VVYLTA 234 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~------~~--v~y~~~ 234 (502)
||+..| |. ..+..+-..++.. |+.. +-+.+.|.-|+|||-.-.-++..+.-..|+ .. -.|-++
T Consensus 21 ~f~~~~-gq-~~~~~~l~~~~~~--~~~~-----~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~c 91 (600)
T PRK09111 21 TFDDLI-GQ-EAMVRTLRNAFET--GRIA-----QAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEHC 91 (600)
T ss_pred CHHHHC-CC-HHHHHHHHHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 776633-85-9999999999972--9842-----0476457898789999999999966988766689988989988658
Q ss_pred HHHHHH----H--HHHHHCCCHHHHHH-----HHH----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 888999----9--99986198899999-----974----03102054444531750699999999998856987999648
Q gi|254780627|r 235 EYFMWR----F--ASAIRDNCALNLKD-----SLR----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 (502)
Q Consensus 235 e~F~~~----~--~~a~~~~~~~~fr~-----~~r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd 299 (502)
....+. + ++|-.+..+++-|+ +|+ ..-|.+||.||.|+. ..-.-|+-|+.+=-.+-|-|.-|.+
T Consensus 92 ~~i~~~~~~d~~e~daas~~~v~~~r~~~~~~~~~p~~~~~kv~iidevhmls~-~afnallktleepp~~~~fi~att~ 170 (600)
T PRK09111 92 QAIMEGRHVDVIEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-AAFNALLKTLEEPPPHVKFIFATTE 170 (600)
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCH-HHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 988668998758851554578889999998605388777546999600110579-9999999876259865499996285
Q ss_pred CCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 75676136303457653021157751588899999999999886431168978989999998502788899999999999
Q gi|254780627|r 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 (502)
Q Consensus 300 ~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~ 379 (502)
|. .+..-..||++ ..+..+-+.+.-..-|++- +..+++.++++++..||..-.||+|+=.+.|.+.+
T Consensus 171 --~~---k~p~ti~src~---~f~~~~~~~~~~~~~l~~i-----~~~e~~~~~~~al~~ia~~a~GS~RDaLSlLDQai 237 (600)
T PRK09111 171 --IR---KVPVTVLSRCQ---RFDLRRIEAEVLAAHLARI-----AEKEGVEVEPDALALIARAAEGSVRDGLSLLDQAI 237 (600)
T ss_pred --HH---HCCHHHHHHHH---EECCCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf --34---37589985441---2010579999999999999-----98607686677999999974898421899999999
Q ss_pred HHHHHCCCCCHHHHHHHHH
Q ss_conf 9863024687788999998
Q gi|254780627|r 380 FRHSFAPILTAEIADELLS 398 (502)
Q Consensus 380 ~~~~~~~~~~~~~~~~~l~ 398 (502)
++. ++.++.+.+++.|+
T Consensus 238 ~~~--~~~i~~~~v~~mLG 254 (600)
T PRK09111 238 AHG--AGEVTAEQVRDMLG 254 (600)
T ss_pred HCC--CCCCCHHHHHHHHC
T ss_conf 727--98756999999868
No 106
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=0.0004 Score=49.34 Aligned_cols=211 Identities=18% Similarity=0.183 Sum_probs=125.8
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCCE--EEEEHHHHHH
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630-68816--8646988899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ-PNLRV--VYLTAEYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~-~~~~v--~y~~~e~F~~ 239 (502)
+|+..| |..-- ..+-..++.. |+.. .-..+.|+-|+|||-+-.-++..+.-.. +...- .|-++....+
T Consensus 14 ~f~~~v-GQ~~v-~~~l~na~~~--~r~~-----haylf~G~rG~GKtt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~~ 84 (643)
T PRK07994 14 TFADVV-GQEHV-LTALANGLSL--GRIH-----HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 84 (643)
T ss_pred CHHHHC-CCHHH-HHHHHHHHHH--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 666653-87999-9999999982--9866-----3487458998888899999999967999999997876776898865
Q ss_pred H-H-----HHHHHCCCHHHHHHHHH---------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 9-9-----99986198899999974---------0310205444453175069999999999885698799964875676
Q gi|254780627|r 240 R-F-----ASAIRDNCALNLKDSLR---------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 240 ~-~-----~~a~~~~~~~~fr~~~r---------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
. | ++|-.+..+++-|+-.. ..-|.|||.+|.|+ +...+-|+-|+.+==.+-|-|+-|.| |.
T Consensus 85 g~~~d~~eidaas~~~vd~~rel~~~~~y~p~~~r~kvyiidEvhmls-~~afnalLKtlEePp~hv~filaTT~--~~- 160 (643)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-RHSFNALLKTLEEPPAHVKFLLATTD--PQ- 160 (643)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCC-HHHHHHHHHHHCCCCHHCEEEEECCC--HH-
T ss_conf 898875886367778889999999844668877853699972210158-99999999862378610089986077--45-
Q ss_pred HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
.+..-..||+. ...+.+-..+.-..-|+.- ...+++..+++.+..||+.-.|++|+=-+.+.+.+++.
T Consensus 161 --k~p~TilSRC~---~f~~~~~~~~~i~~~l~~i-----~~~e~i~~~~~al~~ia~~a~gs~rdalsl~dq~i~~~-- 228 (643)
T PRK07994 161 --KLPVTILSRCL---QFHLKALDVEQIRHQLEHI-----LNEEHIAHEPRALQLLARAADGSLRDALSLTDQAIASG-- 228 (643)
T ss_pred --HCCHHHHHHHH---HEECCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--
T ss_conf --48478997776---5001669999999999999-----99759987889999999974786566888999999865--
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24687788999998
Q gi|254780627|r 385 APILTAEIADELLS 398 (502)
Q Consensus 385 ~~~~~~~~~~~~l~ 398 (502)
++.++.+.+.+.|+
T Consensus 229 ~~~~~~~~v~~mlg 242 (643)
T PRK07994 229 DGQVSTQAVSAMLG 242 (643)
T ss_pred CCCCCHHHHHHHHC
T ss_conf 89747999999858
No 107
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=98.12 E-value=0.00094 Score=46.71 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCE--EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH
Q ss_conf 47899999999824100136555554--898627888857999999999986306881686469888
Q gi|254780627|r 173 NRVALTAAQSIAEVDSHGYTTVRLNP--LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 (502)
Q Consensus 173 N~lA~aAAkaVAe~pg~~~~~~~~NP--Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F 237 (502)
..+|-+.|..+++.... .| +=|+|+.|.|||++++-+..++.+...+-.++|..+=.|
T Consensus 2 ~~~a~~la~~i~~~~~~-------~~~vIgl~G~WGsGKTs~l~~~~~~L~~~~~~~~~v~fn~W~~ 61 (301)
T pfam07693 2 GKYAENLAKLLVEPSLA-------PGFVIGLYGAWGSGKTSFLNLLEDELKEFPEEFHIVYFDPWLF 61 (301)
T ss_pred HHHHHHHHHHHHCCCCC-------CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 17899999999577789-------9979999898999999999999999861368826999812304
No 108
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=0.00015 Score=52.31 Aligned_cols=210 Identities=17% Similarity=0.178 Sum_probs=122.1
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE-CCCCCCHHHHHHHHHHHHHHHCC-CCC--EEEEEHHHHH
Q ss_conf 8876328861478999999998241001365555548986-27888857999999999986306-881--6864698889
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH-ASVGLGKTHLLQAIANASIKRQP-NLR--VVYLTAEYFM 238 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~-G~~GlGKTHLl~ai~~~~~~~~~-~~~--v~y~~~e~F~ 238 (502)
||+..| |..--. .+-..++.. |+. ..-||+ |.-|+|||-+-.-++-.+.-..+ ... -.|-++..+.
T Consensus 14 ~f~e~v-GQ~~v~-~~L~nal~~--~rl------~haylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~C~~i~ 83 (717)
T PRK08853 14 QFKEVV-GQSHVL-TALENALAH--NRL------HHAYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCATCKEID 83 (717)
T ss_pred CHHHHC-CCHHHH-HHHHHHHHC--CCC------CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
T ss_conf 565513-859999-999999970--997------4057610889888989999999986789999999788870267674
Q ss_pred HH-H-----HHHHHCCCHHHHHHH-----HH----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 99-9-----999861988999999-----74----031020544445317506999999999988569879996487567
Q gi|254780627|r 239 WR-F-----ASAIRDNCALNLKDS-----LR----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPS 303 (502)
Q Consensus 239 ~~-~-----~~a~~~~~~~~fr~~-----~r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~ 303 (502)
.. | ++|-.++.+++.|+- |. ..-|.|||.+|.|+ +...+-|+-|+.+=-.+-|-|..|.| |.
T Consensus 84 ~g~~~d~~EiDaAs~~~vdd~rel~~~~~y~p~~~~yKvyiiDEvHmls-~~afnAlLKtlEEPP~hv~FilaTT~--~~ 160 (717)
T PRK08853 84 EGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLIDEVHMLS-RHSFNALLKTLEEPPEYVKFLLATTD--PQ 160 (717)
T ss_pred CCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCC-HHHHHHHHHHHCCCCCCEEEEEECCC--HH
T ss_conf 4787752454056567889999999855548877854799983054438-99999998760378756489984387--34
Q ss_pred HHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 61363034576530211577515888999999999998864311689789899999985027888999999999999863
Q gi|254780627|r 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 (502)
Q Consensus 304 ~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~ 383 (502)
.+..-+.||+. ......-+.+.-..-|..- ...+++.++++.+..||..-.|++|+-.+.+.+.+++.
T Consensus 161 ---kip~TilSRc~---~f~l~~~~~~~i~~~l~~i-----~~~E~i~~~~~al~~ia~~a~Gs~Rdalsl~dqaia~~- 228 (717)
T PRK08853 161 ---KLPVTILSRCL---QFHLKPISVDQIHQQLDFV-----LDKEQVSAEARALGLIAHAADGSMRDALSLTDQAIALG- 228 (717)
T ss_pred ---HCCHHHHHHHH---HCCCCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-
T ss_conf ---37388987654---4232689999999999999-----99759876999999999976883778888999999965-
Q ss_pred HCCCCCHHHHHHHHH
Q ss_conf 024687788999998
Q gi|254780627|r 384 FAPILTAEIADELLS 398 (502)
Q Consensus 384 ~~~~~~~~~~~~~l~ 398 (502)
++.++.+.+++.|+
T Consensus 229 -~g~~~~~~v~~mlg 242 (717)
T PRK08853 229 -NGQVTTDIVSHMLG 242 (717)
T ss_pred -CCCCCHHHHHHHHC
T ss_conf -89716999999858
No 109
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.06 E-value=0.00029 Score=50.36 Aligned_cols=222 Identities=17% Similarity=0.228 Sum_probs=128.6
Q ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHH------CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 644788763288614789999999982------41001365555548986278888579999999999863068816864
Q gi|254780627|r 159 DSRFVFSTFIEGSSNRVALTAAQSIAE------VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 (502)
Q Consensus 159 NpryTFDnFVVG~sN~lA~aAAkaVAe------~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~ 232 (502)
|-.-....-|+|.....- +.+.+|-. +|.++- --++..||+|+|||.|..+++..+... +..++-+
T Consensus 502 ~le~~L~~~ViGQd~AI~-~vs~ai~rsraGl~~~~rPi-----gsFlf~GPTGvGKTElAK~LA~~LFg~--e~~liR~ 573 (823)
T CHL00095 502 HMEETLHKRIIGQDEAVV-AVSKAIRRARVGLKNPNRPI-----ASFIFCGPTGVGKTELTKALASYFFGS--EEAMIRL 573 (823)
T ss_pred HHHHHHHHHHCCCHHHHH-HHHHHHHHHHCCCCCCCCCC-----EEEEEECCCCCCHHHHHHHHHHHHCCC--CCCEEEE
T ss_conf 788878778407699999-99999999970899899974-----689987899887799999999997478--2025885
Q ss_pred EHHHHHHHH-HHHHH----------C-CCH-HHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHHC-C-----
Q ss_conf 698889999-99986----------1-988-999999740310205444453175069999999999--8856-9-----
Q gi|254780627|r 233 TAEYFMWRF-ASAIR----------D-NCA-LNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNS--LLDS-A----- 291 (502)
Q Consensus 233 ~~e~F~~~~-~~a~~----------~-~~~-~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~--l~~~-g----- 291 (502)
.--+|+... |+-+- . |-. +.-| -+-.-|+|+|.|.- +.....+-|+++|+. |.+. |
T Consensus 574 DMSEy~E~hsvsrLIGaPPGYVGy~eGG~LTeaVr--r~PysVvLfDEIEK-AHpdV~nilLQvlDdG~LtD~~Gr~vdF 650 (823)
T CHL00095 574 DMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVR--KKPYTVVLFDEIEK-AHPDIFNLLLQILDDGRLTDSKGRTIDF 650 (823)
T ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHH--CCCCEEEEECHHHH-CCHHHHHHHHHHCCCCCCCCCCCCEEEC
T ss_conf 35101554207674589987667787882019887--19986998621311-3889999887651688434899998843
Q ss_pred --CEEEEECCCCHHHH-----------------------------------CCCCHHHHHHHHCCEEEEECCCCHHHHHH
Q ss_conf --87999648756761-----------------------------------36303457653021157751588899999
Q gi|254780627|r 292 --KQVVAAADRPPSEL-----------------------------------ESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 (502)
Q Consensus 292 --kqiv~tsd~~P~~l-----------------------------------~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~ 334 (502)
--||+||.---..+ ..|.+.+..|+-. ++.-.|-+.+.-..
T Consensus 651 ~NtIIImTSNlGs~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFlnRiDe--ii~F~~L~~~~l~~ 728 (823)
T CHL00095 651 KNTLIIMTSNLGSKVIEKGGGSLGFKLLEDGTKLDEKQYKRLSNLVNEELKQYFRPEFLNRLDE--IIVFRPLTKDEVWE 728 (823)
T ss_pred EEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCE--EEEECCCCHHHHHH
T ss_conf 1039997165055888741344343334454322023589999999999984379878732782--78618999999999
Q ss_pred HHHHHHHHHH--HHC--CCCCCCHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 9999998864--311--6897898999999850278---889999999999998630246877889999987630
Q gi|254780627|r 335 ILKNRLAISQ--KED--PKLNINEEVLMHVARTVTT---SGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVN 402 (502)
Q Consensus 335 Il~~k~~~~~--~~~--~~~~l~~~v~~~la~~~~~---~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~ 402 (502)
|+...+..-. ... -.+.+++++.+||++.--+ ..|.|..++.+.+ .-.+++.+|..-+.
T Consensus 729 Iv~~~l~~l~~rl~~~~i~l~~~~~a~~~l~~~gy~~~~GARpl~R~I~~~i---------~~~ls~~il~g~~~ 794 (823)
T CHL00095 729 IAEIMLKELFKRLNNQGIQLEVDERFKTLLAKEGYNPLYGARPLRRAIMRLL---------EDPLAEEVLSFKIK 794 (823)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHH---------HHHHHHHHHCCCCC
T ss_conf 9999999999999968985998889999999958797768136889999998---------89999999748889
No 110
>KOG0738 consensus
Probab=98.04 E-value=0.00079 Score=47.24 Aligned_cols=151 Identities=19% Similarity=0.250 Sum_probs=99.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHH-----H-HHHHHHCCHHHHHH
Q ss_conf 55554898627888857999999999986306881686469888999999986198899-----9-99974031020544
Q gi|254780627|r 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN-----L-KDSLRNIDLLLIDD 267 (502)
Q Consensus 194 ~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~-----f-r~~~r~~DvLliDD 267 (502)
..|--++++||+|.|||-|..|++.|.- ...+-+|+...++.+ | |+-+. | -.++..--..-||.
T Consensus 243 rPWkgvLm~GPPGTGKTlLAKAvATEc~-----tTFFNVSsstltSKw----R-GeSEKlvRlLFemARfyAPStIFiDE 312 (491)
T KOG0738 243 RPWKGVLMVGPPGTGKTLLAKAVATECG-----TTFFNVSSSTLTSKW----R-GESEKLVRLLFEMARFYAPSTIFIDE 312 (491)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC-----CEEEEECHHHHHHHH----C-CCHHHHHHHHHHHHHHHCCCEEEHHH
T ss_conf 6530005567999747899999988616-----727874024565553----2-52699999999999874885353356
Q ss_pred HHHHCCC-----------CHHHHHHHHHHHHHHC----CCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHH
Q ss_conf 4453175-----------0699999999998856----987999648756761363034576530211577515888999
Q gi|254780627|r 268 MQFLQGK-----------LIQHEFCHLLNSLLDS----AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 (502)
Q Consensus 268 iqfl~gk-----------~tqee~f~~~n~l~~~----gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r 332 (502)
|.-|-++ +.-.||+.-.|-+... .--.|+++-..|= .+++-|+-||+--+.+ .-||.+.|
T Consensus 313 IDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PW---diDEAlrRRlEKRIyI--PLP~~~~R 387 (491)
T KOG0738 313 IDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPW---DIDEALRRRLEKRIYI--PLPDAEAR 387 (491)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCC---CHHHHHHHHHHHHEEE--ECCCHHHH
T ss_conf 778872579865036788888899998633444445651699984368982---0579999987630331--28787899
Q ss_pred HHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHCCC
Q ss_conf 999999998864311689789-8999999850278
Q gi|254780627|r 333 FSILKNRLAISQKEDPKLNIN-EEVLMHVARTVTT 366 (502)
Q Consensus 333 ~~Il~~k~~~~~~~~~~~~l~-~~v~~~la~~~~~ 366 (502)
.+.|+.-+. ...++ +--++.||++..+
T Consensus 388 ~~Li~~~l~-------~~~~~~~~~~~~lae~~eG 415 (491)
T KOG0738 388 SALIKILLR-------SVELDDPVNLEDLAERSEG 415 (491)
T ss_pred HHHHHHHHC-------CCCCCCCCCHHHHHHHHCC
T ss_conf 999997623-------5668887569999998568
No 111
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.03 E-value=0.00016 Score=52.24 Aligned_cols=178 Identities=16% Similarity=0.235 Sum_probs=108.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH----HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCC
Q ss_conf 48986278888579999999999863068816864698889----99999986198899999974031020544445317
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM----WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~----~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~g 273 (502)
-|-++||+|+|||-|-++|+..+-+++-...+==+.-|.-. ..|+-|+-.+-++..|+-=-+-.|.|+|-|.-++.
T Consensus 351 IlclvGpPGvGKTSl~~sIA~al~r~f~rislGGv~DeaeirGHrrTYvgampGrii~~l~~a~~~nPv~llDEiDK~~~ 430 (784)
T PRK10787 351 ILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSS 430 (784)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHCC
T ss_conf 79964699877246999999985898699806887888882564334344368389999997489885665003555224
Q ss_pred C-C--HHHHHHHHHHH-------------HHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHH
Q ss_conf 5-0--69999999999-------------885698799964875676136303457653021157751588899999999
Q gi|254780627|r 274 K-L--IQHEFCHLLNS-------------LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 (502)
Q Consensus 274 k-~--tqee~f~~~n~-------------l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~ 337 (502)
. + ..--|+..+|- =++-.+-+-+|.-. .+. +..-|..|++ +.+|..=..+.++.|.+
T Consensus 431 ~~~Gdp~salLEvLDpeQN~~F~Dhyl~~~~DlS~v~Fi~TaN---~~~-ip~pLlDRmE---~i~~~gYt~~eK~~Ia~ 503 (784)
T PRK10787 431 DMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSN---SMN-IPAPLLDRME---VIRLSGYTEDEKLNIAK 503 (784)
T ss_pred CCCCCHHHHHHHHCCHHHCCCCCCCEEECCCCHHHEEEEEECC---CCC-CCHHHHHHEE---EEEECCCCHHHHHHHHH
T ss_conf 5589988999984597655640003220464522258997327---677-8767763121---55411676788999999
Q ss_pred HHH-----HHHHHHCCCCCCCHHHHHHHHHHCC--CCHHHHHHHHHHHHHHH
Q ss_conf 999-----8864311689789899999985027--88899999999999986
Q gi|254780627|r 338 NRL-----AISQKEDPKLNINEEVLMHVARTVT--TSGRELDGAFNQLVFRH 382 (502)
Q Consensus 338 ~k~-----~~~~~~~~~~~l~~~v~~~la~~~~--~~vR~Legal~~l~~~~ 382 (502)
+-+ ..+......+.++++++.+|.++.+ ..||+||-.+.++.-.+
T Consensus 504 ~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytrEaGvR~ler~i~~i~rk~ 555 (784)
T PRK10787 504 RHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKA 555 (784)
T ss_pred HHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 7453999998289965674399999998753365444251688999999999
No 112
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=98.03 E-value=0.00013 Score=52.89 Aligned_cols=196 Identities=23% Similarity=0.322 Sum_probs=134.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHH-HHHHHHHCCHHH-HHHHHHH-----
Q ss_conf 898627888857999999999986306881686469888999999986198899-999974031020-5444453-----
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN-LKDSLRNIDLLL-IDDMQFL----- 271 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~-fr~~~r~~DvLl-iDDiqfl----- 271 (502)
..+|||+|+|||=|-.||+=|. .-| .+-+|.-+|+ ||--.+-.-.+.+ |.+==+++.+++ ||=|.-+
T Consensus 95 VLLvGPPGTGKTLLAKAvAGEA--~VP---FF~iSGSdFV-EMFVGVGASRVRDLFeqAK~nAPCIIFIDEIDAVGr~RG 168 (505)
T TIGR01241 95 VLLVGPPGTGKTLLAKAVAGEA--GVP---FFSISGSDFV-EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRG 168 (505)
T ss_pred EEEECCCCCCHHHHHHHHHCCC--CCC---CEEECCCCEE-ECCCCCCCEEHHHHHHHHHHHCCCEEEEECHHHCCCCCC
T ss_conf 4731787842467887520258--896---2474076101-112056400014457999971897056401000033356
Q ss_pred CCC--CHHHHHHHHHHHHH-------HCCCEEEEECCCCHHHHCCCCHHHH--HHHHCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 175--06999999999988-------5698799964875676136303457--653021157751588899999999999
Q gi|254780627|r 272 QGK--LIQHEFCHLLNSLL-------DSAKQVVAAADRPPSELESLDPRIR--SRLQGGVSVPLGLHDYEMRFSILKNRL 340 (502)
Q Consensus 272 ~gk--~tqee~f~~~n~l~-------~~gkqiv~tsd~~P~~l~~l~~rL~--SR~~~Gl~~~i~~Pd~e~r~~Il~~k~ 340 (502)
+|. .--+|==+|+|-|. .+..=||+++-.-|.=| |+-|. -||=- -|-|..||+.=|.+||+-
T Consensus 169 aG~lGGGnDEREQTLNQLLVEMDGF~~~~gvIv~AATNRPDvL---D~ALLRPGRFDR--Qv~V~~PD~~GR~~IL~V-- 241 (505)
T TIGR01241 169 AGELGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVL---DPALLRPGRFDR--QVVVDLPDIKGREEILKV-- 241 (505)
T ss_pred CCCCCCCCCHHHHHHHHHHEECCCCCCCCCEEEEEECCCCCCC---CCCCCCCCCCCC--EEECCCCCHHHHHHHHHH--
T ss_conf 4366765413554332331331785898857998504884116---510068787445--134588874678999999--
Q ss_pred HHHHHHCCCCCCCHHH-HHHHHHHCCC-CHHHHHHHHHHHHHHH-HHC-CCCCHHHHHHHHHHHHCCCCCC--CCCHH
Q ss_conf 8864311689789899-9999850278-8899999999999986-302-4687788999998763037887--57989
Q gi|254780627|r 341 AISQKEDPKLNINEEV-LMHVARTVTT-SGRELDGAFNQLVFRH-SFA-PILTAEIADELLSHLVNTGETK--KMRIE 412 (502)
Q Consensus 341 ~~~~~~~~~~~l~~~v-~~~la~~~~~-~vR~Legal~~l~~~~-~~~-~~~~~~~~~~~l~~~~~~~~~~--~i~~~ 412 (502)
+-+++.|.++| +.-||....| |-=+|+=.||.=..-| +-+ ..|++.-..+++..++.-.++| .+|.+
T Consensus 242 -----H~~~~kLa~~vdL~~~Ar~TPGfSGADLaNl~NEAALlAAR~n~~~i~~~~~eeA~Drv~~G~ekKsr~is~~ 314 (505)
T TIGR01241 242 -----HAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAVDRVIAGLEKKSRVISEK 314 (505)
T ss_pred -----HHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf -----8548899702477999701568767889999999999986179865628889878776522766788532677
No 113
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.00 E-value=0.00021 Score=51.27 Aligned_cols=217 Identities=14% Similarity=0.210 Sum_probs=124.3
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHH--HH----CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 47887632886147899999999--82----4100136555554898627888857999999999986306881686469
Q gi|254780627|r 161 RFVFSTFIEGSSNRVALTAAQSI--AE----VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 (502)
Q Consensus 161 ryTFDnFVVG~sN~lA~aAAkaV--Ae----~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~ 234 (502)
.-....-|+|...... +.+.+| +. +|.++- --++..||+|+|||.|..+++..+ +..++.+.-
T Consensus 453 e~~l~~~viGQ~~Ai~-~v~~ai~~~raGL~~~~rPi-----gsFlf~GPTGVGKTElak~LA~~L-----~~~lir~DM 521 (758)
T PRK11034 453 GDRLKMLVFGQDKAIE-ALTEAIKMSRAGLGHEHKPV-----GSFLFAGPTGVGKTEVTVQLSKAL-----GIELLRFDM 521 (758)
T ss_pred HHHHHHHHHCCHHHHH-HHHHHHHHHHCCCCCCCCCC-----EEEEEECCCCCCHHHHHHHHHHHH-----HHHHHCCCH
T ss_conf 9998778745499999-99999999863888999970-----589997899877799999999998-----667721426
Q ss_pred HHHHHHH-HHHHH----------C-CCH-HHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHHCCC-------
Q ss_conf 8889999-99986----------1-988-999999740310205444453175069999999999--885698-------
Q gi|254780627|r 235 EYFMWRF-ASAIR----------D-NCA-LNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNS--LLDSAK------- 292 (502)
Q Consensus 235 e~F~~~~-~~a~~----------~-~~~-~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~--l~~~gk------- 292 (502)
-+|+... ++-+- . +.. +..| -+-.-|+|+|+|.- +......-|+++|+. |.++.+
T Consensus 522 SEy~e~hsvsrLiGaPPGYVGy~eGG~Lte~Vr--~~PysVvL~DEIEK-AhpdV~nilLQvlD~G~LtD~~Gr~vdF~N 598 (758)
T PRK11034 522 SEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI--KHPHAVLLLDEIEK-AHPDVFNLLLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_pred HHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHH--HCCCEEEEEHHHHH-HCHHHHHHHHHHCCCCCCCCCCCCEEECEE
T ss_conf 653120147774489986667677770128787--39877997336756-398999988732377830179999884400
Q ss_pred -EEEEECCCCHHHH---------------------CCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHH--H--
Q ss_conf -7999648756761---------------------3630345765302115775158889999999999988643--1--
Q gi|254780627|r 293 -QVVAAADRPPSEL---------------------ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK--E-- 346 (502)
Q Consensus 293 -qiv~tsd~~P~~l---------------------~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~--~-- 346 (502)
-||+||.---.++ ..|.+.+..|+-. ++.-.|-+.+.-..|++..+..... .
T Consensus 599 tiIImTSN~Ga~~~~~~~~gf~~~~~~~~~~~~l~~~F~PEFlNRiD~--ii~F~~L~~~~l~~Iv~~~l~~l~~rL~~~ 676 (758)
T PRK11034 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDN--IIWFDHLSTDVIHQVVDKFIVELQAQLDQK 676 (758)
T ss_pred EEEEEECCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCE--EEEECCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 199982561748786421475542035999999995479867723674--786388999999999999999999999978
Q ss_pred CCCCCCCHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 168978989999998502788---89999999999998630246877889999987630
Q gi|254780627|r 347 DPKLNINEEVLMHVARTVTTS---GRELDGAFNQLVFRHSFAPILTAEIADELLSHLVN 402 (502)
Q Consensus 347 ~~~~~l~~~v~~~la~~~~~~---vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~ 402 (502)
.-.+.+++++.+|||+.-.+. .|.|.-++.+.+ .-.+++++|..-+.
T Consensus 677 ~i~l~~~~~a~~~l~~~gyd~~~GARpl~R~I~~~i---------~~~La~~il~g~~~ 726 (758)
T PRK11034 677 GVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNL---------KKPLANELLFGSLV 726 (758)
T ss_pred CCEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---------HHHHHHHHHCCCCC
T ss_conf 985998899999999848894537112889999998---------89999999729888
No 114
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=98.00 E-value=3.6e-05 Score=56.78 Aligned_cols=210 Identities=21% Similarity=0.223 Sum_probs=129.8
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH--HHCCCCCEEEEEHHHHHHH
Q ss_conf 88763288614789999999982410013655555489862788885799999999998--6306881686469888999
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI--KRQPNLRVVYLTAEYFMWR 240 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~--~~~~~~~v~y~~~e~F~~~ 240 (502)
||+.-| |-.--- -+-..++. -|+..+ . ....|+-|+|||=.-.-.|-.+- ...++.==.|-++.++.+.
T Consensus 12 ~F~d~~-GQ~~iv-~tL~NAi~--~~ri~H--A---YLF~GpRGtGKTS~ARIfAKaLNC~~~~~~PCn~C~~C~~i~~g 82 (363)
T TIGR02397 12 TFEDVI-GQEHIV-KTLKNAIK--NGRIAH--A---YLFSGPRGTGKTSIARIFAKALNCQGPDGEPCNECESCKEINSG 82 (363)
T ss_pred CCCCCC-CCHHHH-HHHHHHHH--HCCCCC--E---EEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCC
T ss_conf 611023-517999-99999997--189662--3---45028599763558999999865887877877775022776528
Q ss_pred H------HHHHHCCCHHHHHHH-----HH----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEE---EECCCCH
Q ss_conf 9------999861988999999-----74----0310205444453175069999999999885698799---9648756
Q gi|254780627|r 241 F------ASAIRDNCALNLKDS-----LR----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVV---AAADRPP 302 (502)
Q Consensus 241 ~------~~a~~~~~~~~fr~~-----~r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv---~tsd~~P 302 (502)
- ++|-.++.+++-|+= |. ..=|-+||.||.|+. .-|=-.+-.|-+==.+|| -|.| |
T Consensus 83 ~~~DviEiDAASN~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~----~AFNALLKTLEEPP~hV~FIlATTE--~ 156 (363)
T TIGR02397 83 SSLDVIEIDAASNNGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSK----SAFNALLKTLEEPPEHVVFILATTE--P 156 (363)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCH----HHHHHHHHHHCCCCCCEEEEEECCC--H
T ss_conf 986668864865687889999987303687554433588732302865----6899987652279876288873487--1
Q ss_pred HHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 76136303457653021157751588899999999999886431168978989999998502788899999999999986
Q gi|254780627|r 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 (502)
Q Consensus 303 ~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~ 382 (502)
..++.=..||.+. -+..+=+.+.-..-|++ -++++++.+++++++.||..-.||+|+=.+.|.++.++.
T Consensus 157 ---~KiP~TIlSRCQr---F~Fk~i~~~~i~~~L~~-----I~~~E~I~~e~~AL~~IA~~a~GS~RDAlsllDQ~~~~~ 225 (363)
T TIGR02397 157 ---HKIPATILSRCQR---FDFKRIPLEDIVERLKK-----ILDKEGIKIEDEALELIARAADGSMRDALSLLDQAISFG 225 (363)
T ss_pred ---HHCCCCCEEECEE---ECCCCCCHHHHHHHHHH-----HHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf ---1205540210003---12678998999999999-----998708831778999999962896106889999999826
Q ss_pred HH-CCCCCHHHHHHHHH
Q ss_conf 30-24687788999998
Q gi|254780627|r 383 SF-APILTAEIADELLS 398 (502)
Q Consensus 383 ~~-~~~~~~~~~~~~l~ 398 (502)
.- .+.||.+.+.+.|+
T Consensus 226 ~~~DG~i~~~~v~~~lG 242 (363)
T TIGR02397 226 NGSDGKITYEDVNEMLG 242 (363)
T ss_pred CCCCCCCCHHHHHHHHC
T ss_conf 88788657899999835
No 115
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=0.0023 Score=43.95 Aligned_cols=179 Identities=15% Similarity=0.163 Sum_probs=106.2
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCC---CEEEEEHHHHHH
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630688---168646988899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL---RVVYLTAEYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~---~v~y~~~e~F~~ 239 (502)
||+++| |... ..-.--.++.. |+.. +-+.++|+.|+|||-+..+++..+....++. -++.+.+++=
T Consensus 2 ~f~~ii-Gq~~-i~~~L~~~i~~--~rl~-----HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~~~~-- 70 (313)
T PRK05564 2 SFRTII-GHEN-IKNRIDNSIIK--GKFS-----HASLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKPINK-- 70 (313)
T ss_pred CHHHCC-CHHH-HHHHHHHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC--
T ss_conf 832326-8299-99999999987--9987-----50432799985099999999999828997788986588633225--
Q ss_pred HHHHHHHCCCHHHHH---HHH--H----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCH
Q ss_conf 999998619889999---997--4----0310205444453175069999999999885698799964875676136303
Q gi|254780627|r 240 RFASAIRDNCALNLK---DSL--R----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 (502)
Q Consensus 240 ~~~~a~~~~~~~~fr---~~~--r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~ 310 (502)
+.-++++-| ++. + ..-|.+||+.|.+. ..+++-|+-|+.+=- .+--+|++++.+- .+-+
T Consensus 71 ------~~I~vd~IR~l~~~~~~~p~~g~~KV~II~~ae~m~-~~AaNALLKtLEEPP-~~t~fIL~t~~~~----~lLp 138 (313)
T PRK05564 71 ------KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYKSEKMT-EQAQNAFLKTIEEPP-KGVFIILLCENLE----QILD 138 (313)
T ss_pred ------CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHC-HHHHHHHHHCCCCCC-CCEEEEEEECCHH----HCCC
T ss_conf ------699989999999998408625895699980777758-999999845503689-9858998649835----4757
Q ss_pred HHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 457653021157751588899999999999886431168978989999998502788899999999
Q gi|254780627|r 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 (502)
Q Consensus 311 rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~ 376 (502)
-++||.+ .+...+|+.+.-...|+.+ .-.++++....++.-..|++......+.
T Consensus 139 TI~SRCQ---~~~f~~l~~~~i~~~L~~~---------~~~~~~~~~~~~~~~s~G~~~~a~~~~~ 192 (313)
T PRK05564 139 TIKSRCQ---IYKLNRLSKEDIEKFISYK---------YNDIDEENKNSAIAFSDGIPGKVEKFIE 192 (313)
T ss_pred HHHCCCE---EEECCCCCHHHHHHHHHHH---------CCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 7870653---5668998999999999986---------2589999999999982998799999840
No 116
>KOG0741 consensus
Probab=97.96 E-value=0.00013 Score=52.75 Aligned_cols=265 Identities=17% Similarity=0.248 Sum_probs=151.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCC-HHH----HHHHHH-----HHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 544445434455764478876328861-478----999999-----9982410013655555489862788885799999
Q gi|254780627|r 146 GKQTISPVFGSPLDSRFVFSTFIEGSS-NRV----ALTAAQ-----SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 (502)
Q Consensus 146 ~~~~~~~~~~s~LNpryTFDnFVVG~s-N~l----A~aAAk-----aVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~a 215 (502)
++....+..++-+||.|.|+..=+|.= -+| -.|-|. .|.++.|-... --+.+|||+|.|||-+..-
T Consensus 200 ~~~~~k~~~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HV----KGiLLyGPPGTGKTLiARq 275 (744)
T KOG0741 200 GKSKTKPASNSIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHV----KGILLYGPPGTGKTLIARQ 275 (744)
T ss_pred CCCCCCCHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCE----EEEEEECCCCCCHHHHHHH
T ss_conf 366677221123189987143266651178999999987763299889987195112----3578877999870189999
Q ss_pred HHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHH---HHHH------HCCHHHHHHHHHHC-------CC-----
Q ss_conf 999998630688168646988899999998619889999---9974------03102054444531-------75-----
Q gi|254780627|r 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK---DSLR------NIDLLLIDDMQFLQ-------GK----- 274 (502)
Q Consensus 216 i~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr---~~~r------~~DvLliDDiqfl~-------gk----- 274 (502)
||--+..+.|. + +..-+-.+.||-..-+|--.-|+ +.|| +..+.++|.|.-+- |-
T Consensus 276 IGkMLNArePK--I--VNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD 351 (744)
T KOG0741 276 IGKMLNAREPK--I--VNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHD 351 (744)
T ss_pred HHHHHCCCCCC--C--CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCH
T ss_conf 87874579986--3--4757889876063078899998757999984376677259996346799974488789886318
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHH--HHHHCCEEEEECCCCHHHHHHHHHHH---HHHHHHHCCC
Q ss_conf 069999999999885698799964875676136303457--65302115775158889999999999---9886431168
Q gi|254780627|r 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR--SRLQGGVSVPLGLHDYEMRFSILKNR---LAISQKEDPK 349 (502)
Q Consensus 275 ~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~--SR~~~Gl~~~i~~Pd~e~r~~Il~~k---~~~~~~~~~~ 349 (502)
..-..|+.-+|-.-+-+.-+|+--..-+.- +++-|. .||+ ..++|.-||-+-|+.||+-- +..+.....+
T Consensus 352 ~VVNQLLsKmDGVeqLNNILVIGMTNR~Dl---IDEALLRPGRlE--VqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~d 426 (744)
T KOG0741 352 TVVNQLLSKMDGVEQLNNILVIGMTNRKDL---IDEALLRPGRLE--VQMEISLPDEKGRLQILKIHTKRMRENNKLSAD 426 (744)
T ss_pred HHHHHHHHHCCCHHHHHCEEEEECCCCHHH---HHHHHCCCCCEE--EEEEEECCCCCCCEEEEEHHHHHHHHCCCCCCC
T ss_conf 999999985322876616789940473666---788755887169--999984688767278887144556651787777
Q ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---HHCCCH
Q ss_conf 97898999999850278889999999999998630246877889999987630378875798999999999---809999
Q gi|254780627|r 350 LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK---HYNISR 426 (502)
Q Consensus 350 ~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~I~~~V~~---~~~i~~ 426 (502)
+. -+-+.-+..|+++ -||||.+..-..+| +++.+..+.. ... +.. ..+.-+++.++-..+..+ -||++.
T Consensus 427 Vd--l~elA~lTKNfSG--AEleglVksA~S~A-~nR~vk~~~~-~~~-~~~-~~e~lkV~r~DFl~aL~dVkPAFG~se 498 (744)
T KOG0741 427 VD--LKELAALTKNFSG--AELEGLVKSAQSFA-MNRHVKAGGK-VEV-DPV-AIENLKVTRGDFLNALEDVKPAFGISE 498 (744)
T ss_pred CC--HHHHHHHHCCCCH--HHHHHHHHHHHHHH-HHHHHCCCCC-EEC-CCH-HHHHEEECHHHHHHHHHHCCCCCCCCH
T ss_conf 69--8999998557862--67899999888898-8866136863-112-711-143202028878989873575448788
Q ss_pred HHHHC
Q ss_conf 99408
Q gi|254780627|r 427 NDLLS 431 (502)
Q Consensus 427 ~~l~s 431 (502)
+||.+
T Consensus 499 e~l~~ 503 (744)
T KOG0741 499 EDLER 503 (744)
T ss_pred HHHHH
T ss_conf 99999
No 117
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.96 E-value=0.0027 Score=43.47 Aligned_cols=249 Identities=16% Similarity=0.221 Sum_probs=128.6
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH----------HHHCCCCCEE
Q ss_conf 478876328861478999999998241001365555548986278888579999999999----------8630688168
Q gi|254780627|r 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS----------IKRQPNLRVV 230 (502)
Q Consensus 161 ryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~----------~~~~~~~~v~ 230 (502)
-|-|-- |||...- ..|-.-.|-+|+-+ =+.|-|+.|+|||.|..|++.-+ ....|..--.
T Consensus 8 ~fPf~a-IvGQe~~--k~aLll~av~p~iG-------gVLi~G~~GtgKStlvRala~lLP~i~~v~~~~f~~~p~~p~~ 77 (347)
T CHL00081 8 VFPFTA-IVGQEEM--KLALLLNVIDPKIG-------GVMIMGDRGTGKSTTIRALVDLLPEIEVVKNDPFNSDPRDPDL 77 (347)
T ss_pred CCCHHH-HCCHHHH--HHHHHHHHCCCCCC-------EEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCC
T ss_conf 898406-5384999--99999982578878-------6998789987499999999985787422068876789898100
Q ss_pred EEE----------------------------HHH-H--HHHHHHHHHCCCHHHHHHHH---HHCCHHHHHHHHHHCCCCH
Q ss_conf 646----------------------------988-8--99999998619889999997---4031020544445317506
Q gi|254780627|r 231 YLT----------------------------AEY-F--MWRFASAIRDNCALNLKDSL---RNIDLLLIDDMQFLQGKLI 276 (502)
Q Consensus 231 y~~----------------------------~e~-F--~~~~~~a~~~~~~~~fr~~~---r~~DvLliDDiqfl~gk~t 276 (502)
+.+ +|+ . +-++-.+++.+. ..|..=. -+--+|.+|+|-.+.. ++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~p~v~lPlgaTEDrv~GslDie~al~~G~-~~f~pGlLa~A~rGiLyvDEINll~d-~~ 155 (347)
T CHL00081 78 MSDEVRERIRNGEKIPTKKIKIPMVDLPLGATEDRVCGTIDIEKALTEGV-KAFEPGLLAKANRGILYVDEVNLLDD-HL 155 (347)
T ss_pred CCHHHHHHHCCCCCCCCEECCCCEEECCCCCCCCEECCCHHHHHHHHCCC-CCCCCCHHHHCCCCEEEEEHHHHHHH-HH
T ss_conf 24266654314666752114686253688885230114000998984587-11565312220388588614543237-99
Q ss_pred HHHHHHHHHH----HHHCC-------CEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEEC-CCCHHHHHHHHHHHHHH--
Q ss_conf 9999999999----88569-------8799964875676136303457653021157751-58889999999999988--
Q gi|254780627|r 277 QHEFCHLLNS----LLDSA-------KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG-LHDYEMRFSILKNRLAI-- 342 (502)
Q Consensus 277 qee~f~~~n~----l~~~g-------kqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~-~Pd~e~r~~Il~~k~~~-- 342 (502)
|.-++..... +-..| +-+++++.. |.| ..|.+.|..||. |.+++. ++|.|.|+.|+++....
T Consensus 156 v~~LLda~a~G~~~VEReG~S~~~Pa~F~liaT~N-PeE-geLrp~llDRF~--l~v~v~~~~~~e~R~eiv~~r~~f~~ 231 (347)
T CHL00081 156 VDILLDSAASGWNTVEREGISIRHPARFVLIGSGN-PEE-GELRPQLLDRFG--MHAEIRTVKDPELRVKIVEQRSNFDK 231 (347)
T ss_pred HHHHHHHHHCCEEEECCCCEEECCCCCEEEEECCC-CCC-CCCCHHHHHHEE--EEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999998558089804642330575006885578-655-674888882632--26745887898999999999997651
Q ss_pred ----------------------HHHHCCCCCCCHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHC-C-CCCHHHHH
Q ss_conf ----------------------64311689789899999985027----88899999999999986302-4-68778899
Q gi|254780627|r 343 ----------------------SQKEDPKLNINEEVLMHVARTVT----TSGRELDGAFNQLVFRHSFA-P-ILTAEIAD 394 (502)
Q Consensus 343 ----------------------~~~~~~~~~l~~~v~~~la~~~~----~~vR~Legal~~l~~~~~~~-~-~~~~~~~~ 394 (502)
....-+.+.++++++.|+++... .+.|-=..++..-.|+|.+. + .++.+.++
T Consensus 232 ~p~~f~~~~~~~~~~l~~~I~~Ar~~L~~V~v~~~~~~~i~~~~~~~~v~g~RA~I~l~raARA~AAL~GR~~V~~eDv~ 311 (347)
T CHL00081 232 NPENFREKYSESQDALKTQIILARQLLPNVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFNGRDEVTPGDIE 311 (347)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 96999999887899999999999864477355999999999999984899871899999999999998699836899999
Q ss_pred HHHHHHHCCCCCCC-----CCHHHHHHHHHHHHCCC
Q ss_conf 99987630378875-----79899999999980999
Q gi|254780627|r 395 ELLSHLVNTGETKK-----MRIEDIQRMVAKHYNIS 425 (502)
Q Consensus 395 ~~l~~~~~~~~~~~-----i~~~~I~~~V~~~~~i~ 425 (502)
.+....+..--.+. =+-..+...|++-||++
T Consensus 312 ~aa~lVL~HRlrr~P~e~~~s~~r~~~~~~~~~~~~ 347 (347)
T CHL00081 312 KVITLCLRHRLRKDPLESIDSGLKVQKVFQKIFGLK 347 (347)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 999984201057996200165206999999984889
No 118
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=97.94 E-value=0.002 Score=44.42 Aligned_cols=181 Identities=13% Similarity=0.139 Sum_probs=111.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHH-CCCCCEEEEEHHHH--HHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCC-
Q ss_conf 986278888579999999999863-06881686469888--99999998619889999997403102054444531750-
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKR-QPNLRVVYLTAEYF--MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~-~~~~~v~y~~~e~F--~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~- 275 (502)
++||+-..=.-+.+..|-..+... ..+..+..+.+++- ..+.+... .+++ | +-.--+.++.|-+|+.++.
T Consensus 5 ll~GeE~~li~~~~~~i~~~~~~~~~~~fn~~~~dg~e~~~~~~~l~~a--~T~P-f---~~~~RlVvvk~a~~~~~~~~ 78 (326)
T PRK07452 5 LYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDAEQAIQALNEA--MTPP-F---GSGGRLVWLKNSPLCQGCSE 78 (326)
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHH--CCCC-C---CCCCEEEEEECCCCCCCCCH
T ss_conf 9983828999999999999608954467623787375542599999986--2788-7---78855999836610024878
Q ss_pred -HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHH--H-HCCEEEEECCC---CHHHHHHHHHHHHHHHHHHCC
Q ss_conf -6999999999988569879996487567613630345765--3-02115775158---889999999999988643116
Q gi|254780627|r 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR--L-QGGVSVPLGLH---DYEMRFSILKNRLAISQKEDP 348 (502)
Q Consensus 276 -tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR--~-~~Gl~~~i~~P---d~e~r~~Il~~k~~~~~~~~~ 348 (502)
..++|-..+...- .+.-+||+.... ++.|.... + ..|.+++...| +.+.....+++. +...
T Consensus 79 ~~~~~l~~~l~~~p-~~t~lv~~~~~k------~D~R~K~~K~l~k~~~~~ef~~~~~~~~~~l~~wi~~~-----~~~~ 146 (326)
T PRK07452 79 ELLAELERTLPLIP-ENTHLLLTNTKK------PDGRLKSTKLLQKLAEEKEFSLPPPWDGEGQKQLVERT-----AQEL 146 (326)
T ss_pred HHHHHHHHHHHCCC-CCEEEEEEECCC------CCHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHH-----HHHC
T ss_conf 89999999861799-975999984676------32377878999840113454068865799999999999-----9986
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHH
Q ss_conf 8978989999998502788899999999999986302-4687788999998
Q gi|254780627|r 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLS 398 (502)
Q Consensus 349 ~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~-~~~~~~~~~~~l~ 398 (502)
|+.|+.+++++|++.+.+|.+.|..-+.+|..|+.-. +.||.+.+..++.
T Consensus 147 g~~i~~~a~~~Lv~~~G~dl~~l~~EleKL~ly~~~~~~~It~e~V~~lv~ 197 (326)
T PRK07452 147 GVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSEKPISAEDVKALVS 197 (326)
T ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHC
T ss_conf 999899999999998684399999999999986289997068999998827
No 119
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.93 E-value=0.00028 Score=50.45 Aligned_cols=122 Identities=16% Similarity=0.269 Sum_probs=90.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHC-----------CC---------------H
Q ss_conf 548986278888579999999999863068816864698889999999861-----------98---------------8
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD-----------NC---------------A 250 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~-----------~~---------------~ 250 (502)
.-..|.|++|.|||-+.|-.....+++ +.++.|+|.|.=+.+|+.-+++ +. .
T Consensus 25 s~~li~G~~GtGKsi~~~~~~~~~l~~--g~~~~yis~e~t~~~~i~qm~s~g~di~~~~~~G~l~~i~~~~~~~~~~~~ 102 (230)
T PRK08533 25 SIILIEGDESTGKSILSQRLAYGFLQN--GYSVSYVSSQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEK 102 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEEECCCHHHHHHHHHHCCCCCHHHHHCCCEEEEECCCCCCCHHHH
T ss_conf 489998689987899999999999878--986999994389999999999869981799757967999613433540457
Q ss_pred HHHH------HHHHHCCHHHHHHHHHH-CCC---CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCE
Q ss_conf 9999------99740310205444453-175---0699999999998856987999648756761363034576530211
Q gi|254780627|r 251 LNLK------DSLRNIDLLLIDDMQFL-QGK---LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 (502)
Q Consensus 251 ~~fr------~~~r~~DvLliDDiqfl-~gk---~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl 320 (502)
.+|- .+..+.|+++||-+-.+ ... .+-.+|+..|..+.+.||-|++|.| |.+ +++....|+.+.-
T Consensus 103 ~~~L~~ll~~~~~~~~dvIIIDSlS~l~~~~~~~~~~~~~~~~lk~l~s~gktIilTv~--p~~---~~e~~l~~lrs~a 177 (230)
T PRK08533 103 RDFLDKLMNTRRFYEKDVVIIDSLSSLVSRDASEVQIRDLMAFFKRISSLNKVIILTAN--PKE---LPESVLLILRTAS 177 (230)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC--CCC---CCHHHHHHHHEEE
T ss_conf 89999997326643798999905318851677789999999999999858988999956--331---3624544204104
Q ss_pred EEEEC
Q ss_conf 57751
Q gi|254780627|r 321 SVPLG 325 (502)
Q Consensus 321 ~~~i~ 325 (502)
.+-|.
T Consensus 178 Dv~i~ 182 (230)
T PRK08533 178 TILIR 182 (230)
T ss_pred EEEEE
T ss_conf 89999
No 120
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.92 E-value=0.00015 Score=52.31 Aligned_cols=171 Identities=19% Similarity=0.241 Sum_probs=109.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHC-----CCCCEEEEEH------HHHHHHHHHHHHCCCH-------HHHHHHH-
Q ss_conf 5489862788885799999999998630-----6881686469------8889999999861988-------9999997-
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQ-----PNLRVVYLTA------EYFMWRFASAIRDNCA-------LNLKDSL- 257 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~-----~~~~v~y~~~------e~F~~~~~~a~~~~~~-------~~fr~~~- 257 (502)
+-|||.|-+|.|||--.+++-.++.... |.-..+.+.+ .+--..+..++-.+.. ....+.|
T Consensus 294 ~cLYISGVPGTGKTATV~eVIr~L~~~~~~~~lp~F~fVEINGMkLt~P~qaY~~L~e~Ltg~k~~~~~~A~~lL~k~F~ 373 (650)
T PTZ00112 294 QILYISGVPGTGKTATVYMVIKELQNKKLKGQLPWFNLFEINGVNLVHPNAAYRVFYKKLFNKKPPNALNSYKELDKLFN 373 (650)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf 56999789999800369999999999997089998159997363779878899999999848988867899999999826
Q ss_pred --HHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHC-CCCHHHHHHHHCCEEEEECCCCHHHHHH
Q ss_conf --4031020544445317506999999999988569879996487567613-6303457653021157751588899999
Q gi|254780627|r 258 --RNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELE-SLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 (502)
Q Consensus 258 --r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~-~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~ 334 (502)
|..-|||+|-+..|- -+.|..++++||-=...+-++|+-+-.---+|+ -|..|+.|||..+= ..-+|=..+--..
T Consensus 374 ~~r~p~VlLvDELD~Lv-TkkQ~VlYNLFdWPT~~~SkLIVIaIANTMDLPERL~~RVsSRLGltR-ltF~PYt~~QL~e 451 (650)
T PTZ00112 374 NNRTPSILIVDEADYIV-TKTQKVLFTLFDWPTKKNSKLILIIISNTMDLPYKMKPSCRSRLAFGR-LVFSPYKYQQIEK 451 (650)
T ss_pred CCCCCEEEEECHHHHHH-HCCCCEEEECCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCE-ECCCCCCHHHHHH
T ss_conf 89971899971577776-367745777366889888707999985067860656666555228850-0439989999999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC---CCHHHHHHHH
Q ss_conf 9999998864311689789899999985027---8889999999
Q gi|254780627|r 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVT---TSGRELDGAF 375 (502)
Q Consensus 335 Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~---~~vR~Legal 375 (502)
|++.++... -.+.++++.|.|+++. |+.|.--.+.
T Consensus 452 II~sRL~~~------~~f~~dAIQl~ARKVAavSGDARRALdIC 489 (650)
T PTZ00112 452 VIKERLENC------EIIDHTALQLCARRVTNYSGDMRKALQIC 489 (650)
T ss_pred HHHHHHCCC------CCCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 999986267------77887899999888875031489999999
No 121
>KOG0735 consensus
Probab=97.91 E-value=0.00068 Score=47.68 Aligned_cols=185 Identities=20% Similarity=0.209 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHCCCCCCC----CCCCC--EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCC
Q ss_conf 899999999824100136----55555--489862788885799999999998630688168646988899999998619
Q gi|254780627|r 175 VALTAAQSIAEVDSHGYT----TVRLN--PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN 248 (502)
Q Consensus 175 lA~aAAkaVAe~pg~~~~----~~~~N--PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~ 248 (502)
-|..+-+.|.+.|.+-.. ++..+ -..+||++|.|||||..|++.. -+.+++-+..-+..+.|+-|.-.+
T Consensus 674 ~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~-----~~~~fisvKGPElL~KyIGaSEq~ 748 (952)
T KOG0735 674 EAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASN-----SNLRFISVKGPELLSKYIGASEQN 748 (952)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHH-----CCEEEEEECCHHHHHHHHCCCHHH
T ss_conf 999999999855410367886088666554588779998578888888853-----780599825889999874500788
Q ss_pred CHHHHHHHHHH--CCHHHHHHHHHHCCCC-------H---HHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHH--H
Q ss_conf 88999999740--3102054444531750-------6---9999999999885698799964875676136303457--6
Q gi|254780627|r 249 CALNLKDSLRN--IDLLLIDDMQFLQGKL-------I---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR--S 314 (502)
Q Consensus 249 ~~~~fr~~~r~--~DvLliDDiqfl~gk~-------t---qee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~--S 314 (502)
--+-| ++-|+ -=+|-+|...-++-|+ | -+.|+.-+|-.-.-.+-.|+++..-|.-|+ +-|. .
T Consensus 749 vR~lF-~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliD---pALLRpG 824 (952)
T KOG0735 749 VRDLF-ERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLID---PALLRPG 824 (952)
T ss_pred HHHHH-HHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC---HHHCCCC
T ss_conf 99999-9865149748971210243766687777742999999987603633445389997337834367---7662887
Q ss_pred HHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH-HHHHHHHHCCC-CHHHHHHHHHH
Q ss_conf 53021157751588899999999999886431168978989-99999850278-88999999999
Q gi|254780627|r 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE-VLMHVARTVTT-SGRELDGAFNQ 377 (502)
Q Consensus 315 R~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~-v~~~la~~~~~-~vR~Legal~~ 377 (502)
||---+ --..||-..|+.|++.- . ..+.++++ -++.+|....+ +--+|.+.+..
T Consensus 825 RlD~~v--~C~~P~~~eRl~il~~l-s------~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~ 880 (952)
T KOG0735 825 RLDKLV--YCPLPDEPERLEILQVL-S------NSLLKDTDVDLECLAQKTDGFTGADLQSLLYN 880 (952)
T ss_pred CCCEEE--ECCCCCCHHHHHHHHHH-H------HCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 654015--67998928999999998-5------34577521016887652178736659989877
No 122
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=97.90 E-value=0.00055 Score=48.35 Aligned_cols=270 Identities=15% Similarity=0.098 Sum_probs=150.5
Q ss_pred CEE-EEECCCCCCHHHHHHHHHHHHHHH-CCCCCEEEEEHHHHH-HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCC
Q ss_conf 548-986278888579999999999863-068816864698889-99999986198899999974031020544445317
Q gi|254780627|r 197 NPL-FIHASVGLGKTHLLQAIANASIKR-QPNLRVVYLTAEYFM-WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 (502)
Q Consensus 197 NPL-fi~G~~GlGKTHLl~ai~~~~~~~-~~~~~v~y~~~e~F~-~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~g 273 (502)
-|+ +|||.--.=+.+.+..|-+.+... ..+..+.++.+.++. .+++.+++.-.+ | -+--++++++..++.|
T Consensus 16 ~pvyli~G~e~~li~~~~~~i~~~~~~~~~~~~n~~~~d~~~~~~~~l~~~~~t~sl--f----~~krlViv~~~~~~~~ 89 (336)
T PRK05574 16 APVYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTVDGSETDWDDVLEACQSLPL--F----SDRKLVELRLPEGLTG 89 (336)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCC--C----CCCEEEEEECCCCCCC
T ss_conf 867999858699999999999998607786530589971686999999998648997--7----8975999988876653
Q ss_pred CCHHHH---HHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHH--HH----HCCEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 506999---99999998856987999648756761363034576--53----0211577515888999999999998864
Q gi|254780627|r 274 KLIQHE---FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS--RL----QGGVSVPLGLHDYEMRFSILKNRLAISQ 344 (502)
Q Consensus 274 k~tqee---~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~S--R~----~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~ 344 (502)
|+..++ |...+.......--++++.. ..++.|-.. .| ..|.+++..+|+.......++..
T Consensus 90 k~~~~~l~~l~~~l~~~~~~~~lvli~~~------~~~d~~~k~~k~~k~l~~~~~~i~~~~~~~~~l~~~i~~~----- 158 (336)
T PRK05574 90 KKGEEALKRLEAYLENPLPHTDLLLLAPL------PKLDKRKEKSAWFKALKKKAVVVEAQTPKEAELPQWIQQR----- 158 (336)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEC------CCCCHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHH-----
T ss_conf 11379999999987079999769999877------8633688889999999848079980699989999999999-----
Q ss_pred HHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH---
Q ss_conf 31168978989999998502788899999999999986302468778899999876303788757989999999998---
Q gi|254780627|r 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKH--- 421 (502)
Q Consensus 345 ~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~I~~~V~~~--- 421 (502)
+...|+.++++++.+|++.+.+|.+.+...+.+|..|+. ++.||.+.+..++.+. ...++-.+.++++..
T Consensus 159 ~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~-~~~It~~dV~~~v~~~------~~~~~f~L~dai~~~~~~ 231 (336)
T PRK05574 159 LKQQGLRIDAAALQLLAERVEGNLLALAQEIEKLALLYP-DGKITLEDVEEAVPDS------ARFDVFDLVDAILAGKIA 231 (336)
T ss_pred HHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHCCC------CCCCHHHHHHHHHCCCHH
T ss_conf 998499989899999999721139999999999998378-8887899999986164------335679999999878999
Q ss_pred --HCCCHHHHHCCCC-CHHHC--HHHHHH-HHHHHHH--CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH--CCHHHHH
Q ss_conf --0999999408887-74014--457999-9999985--15687899988479843799999999999986--1699999
Q gi|254780627|r 422 --YNISRNDLLSNRR-VRTVV--RPRQVA-MYLSKIM--TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE--TDITLKK 491 (502)
Q Consensus 422 --~~i~~~~l~s~~R-~~~i~--~~Rqia-myL~r~~--t~~s~~~IG~~fg~rdHsTV~~a~~ki~~~~~--~d~~~~~ 491 (502)
+.+-. ++....- .-.|. ..||+- +|.++.+ -+.+..+|.+.+|- |.-+ ++++.+... +...+.+
T Consensus 232 ~al~~l~-~l~~~~~~~~~il~~l~~~~r~l~~ik~~~~~g~~~~~i~~~l~i--~~~~---~~~~~~~~~~~s~~~L~~ 305 (336)
T PRK05574 232 RALRILD-GLRLEGEEPIKLLAALQREFRLLLQLKILLQQGYPLQQLFKELRV--WPYR---RKLALRALQRLSLKQLEQ 305 (336)
T ss_pred HHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC--CHHH---HHHHHHHHHCCCHHHHHH
T ss_conf 9999999-999779972999999999999999999998769999999988399--9999---999999997299999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780627|r 492 EVELL 496 (502)
Q Consensus 492 ~i~~i 496 (502)
.+..+
T Consensus 306 ~l~~l 310 (336)
T PRK05574 306 AIQLL 310 (336)
T ss_pred HHHHH
T ss_conf 99999
No 123
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=97.90 E-value=0.001 Score=46.38 Aligned_cols=237 Identities=20% Similarity=0.276 Sum_probs=153.5
Q ss_pred CCCCCHHHHHHHHHHH-HHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH--CCC----CCEEEEEHHHHHHH
Q ss_conf 2886147899999999-8241001365555548986278888579999999999863--068----81686469888999
Q gi|254780627|r 168 IEGSSNRVALTAAQSI-AEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR--QPN----LRVVYLTAEYFMWR 240 (502)
Q Consensus 168 VVG~sN~lA~aAAkaV-Ae~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~--~~~----~~v~y~~~e~F~~~ 240 (502)
++|---.+=.+ .+| |.. .-.||||+ |.+|+|||=+.-+.|..+.+. -|+ ++|+-+.- -.
T Consensus 210 LIGRE~EleRt--iQvLCRR-------~KNNPl~V-GEPGVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDm----G~ 275 (774)
T TIGR02639 210 LIGREDELERT--IQVLCRR-------KKNNPLLV-GEPGVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDM----GT 275 (774)
T ss_pred CCCCHHHHHHH--HHHHCCC-------CCCCCCEE-CCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECH----HH
T ss_conf 34566887423--3320345-------67887204-48886448999999998641564670024783454043----45
Q ss_pred HHHHHHC-CCHHH-HH------HHHHHCCHHHHHHHHHHCCC-CH---HHHHHHHHHHHHHCCCEEEEECCCCHHHHCCC
Q ss_conf 9999861-98899-99------99740310205444453175-06---99999999998856987999648756761363
Q gi|254780627|r 241 FASAIRD-NCALN-LK------DSLRNIDLLLIDDMQFLQGK-LI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 (502)
Q Consensus 241 ~~~a~~~-~~~~~-fr------~~~r~~DvLliDDiqfl~gk-~t---qee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l 308 (502)
++.+-|= |+.++ .| ++.-++.+|=||=||-+-|= +| ....=+++-=...+|+-=-|-|-.+-.-=..|
T Consensus 276 LLAGTKYRGDFE~RLK~V~~Ei~~~~~anILFIDEIHTIVGAGATSGGsmDASNLLKPaL~~G~iRCIGsTTy~EY~~~F 355 (774)
T TIGR02639 276 LLAGTKYRGDFEERLKAVVSEIEKEPNANILFIDEIHTIVGAGATSGGSMDASNLLKPALASGKIRCIGSTTYEEYKNHF 355 (774)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCHHHHHCHH
T ss_conf 64102454247899999999985289995466411010331787875155244321125307877862265248641110
Q ss_pred --CHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf --034576530211577515888999999999998864311689789899999985027888999999999999863024
Q gi|254780627|r 309 --DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 (502)
Q Consensus 309 --~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~ 386 (502)
+.-|.=||+- +||..|..|..+.||+- +....-++.++..+++++++-|+-...=|+ =+|-
T Consensus 356 eKDrALsRRFQK---IDv~EPs~eet~~ILkG-Lk~~YE~fH~V~Y~~eal~~Av~LS~ryI~------------DRfL- 418 (774)
T TIGR02639 356 EKDRALSRRFQK---IDVGEPSIEETVKILKG-LKEQYEEFHHVKYSDEALEAAVELSARYIN------------DRFL- 418 (774)
T ss_pred HCCCCCCCCCCE---ECCCCCCHHHHHHHHHH-HHHHHHCCCCEECCHHHHHHHHHHHHHHCC------------CCCC-
T ss_conf 102021654233---11795788899999986-554201325011386999999999888602------------5789-
Q ss_pred CCC--HHHHHHHHHH-HHCCC--CCCC--------------CCHHHHHHHHHHHHCCCHHHHHCCC-CCH
Q ss_conf 687--7889999987-63037--8875--------------7989999999998099999940888-774
Q gi|254780627|r 387 ILT--AEIADELLSH-LVNTG--ETKK--------------MRIEDIQRMVAKHYNISRNDLLSNR-RVR 436 (502)
Q Consensus 387 ~~~--~~~~~~~l~~-~~~~~--~~~~--------------i~~~~I~~~V~~~~~i~~~~l~s~~-R~~ 436 (502)
+| +|+..|+=+- -++.. +... |++.+|-++||+-=+|+...+.+.- |.+
T Consensus 419 -PDKAIDviDEaGA~~~l~~~~~~~~~eadekGleetalPev~~~diE~vvak~a~iP~~~~s~ddD~~~ 487 (774)
T TIGR02639 419 -PDKAIDVIDEAGAAFRLRAKAKKKANEADEKGLEETALPEVNVKDIEEVVAKMAKIPVKTVSSDDDREK 487 (774)
T ss_pred -CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHH
T ss_conf -854322889999999971202776432011253000478785444999998871899415426447988
No 124
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.88 E-value=0.00013 Score=52.79 Aligned_cols=103 Identities=19% Similarity=0.174 Sum_probs=71.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCC--H---------------------------
Q ss_conf 98627888857999999999986306881686469888999999986198--8---------------------------
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC--A--------------------------- 250 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~--~--------------------------- 250 (502)
.|.|++|.|||-|..-+..+..++ +.+++|+|.|+-..+++...+.-. .
T Consensus 3 Li~G~pGsGKT~~a~qfl~~~a~~--ge~~lyis~eE~~~~l~~~~~~~g~d~~~~~~~g~l~i~~~~~~~~~~~~~~~~ 80 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR 80 (187)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCHHHHHH
T ss_conf 587689999999999999999876--997899995079999999999839985898645856899626200220333236
Q ss_pred HHHHHHHH------HCCHHHHHHHHHHCC-C--CHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 99999974------031020544445317-5--069999999999885698799964875676
Q gi|254780627|r 251 LNLKDSLR------NIDLLLIDDMQFLQG-K--LIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 251 ~~fr~~~r------~~DvLliDDiqfl~g-k--~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
..+.+.+. ..|.++||-+..+.- . ....+++..+..|...|..+++++...+..
T Consensus 81 ~~l~~~i~~~i~~~~~~~vVIDSi~~l~~~~~~~~~~~~~~l~~~l~~~~~t~ll~~e~~~~~ 143 (187)
T cd01124 81 LELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLE 143 (187)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 789999999999849989999486887525666689999999999997699689999742566
No 125
>KOG0744 consensus
Probab=97.88 E-value=0.0009 Score=46.84 Aligned_cols=191 Identities=18% Similarity=0.216 Sum_probs=118.3
Q ss_pred CCCHHHH----HHHCCCCC--H-HHHHHHHHH-HHHCCCCCCCCCCCCEE-EEECCCCCCHHHHHHHHHHHHH----HHC
Q ss_conf 7644788----76328861--4-789999999-98241001365555548-9862788885799999999998----630
Q gi|254780627|r 158 LDSRFVF----STFIEGSS--N-RVALTAAQS-IAEVDSHGYTTVRLNPL-FIHASVGLGKTHLLQAIANASI----KRQ 224 (502)
Q Consensus 158 LNpryTF----DnFVVG~s--N-~lA~aAAka-VAe~pg~~~~~~~~NPL-fi~G~~GlGKTHLl~ai~~~~~----~~~ 224 (502)
+=|--+| ||.|-|.+ + -+-|+|+-. .++. +..-+-..||-| .+|||+|.|||-|..|.+..+- .++
T Consensus 131 ~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek-~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y 209 (423)
T KOG0744 131 YLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEK-KVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRY 209 (423)
T ss_pred ECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC-CCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHEEEECCCC
T ss_conf 0351154305788764132899999999999888761-788744664148998579998822799999875146523764
Q ss_pred CCCCEEEEEHHHHH-HHHHHHHHC-----CCHHHHHHHHHHCCHHHHHHHHHHCC-C-------------CHHHHHHHHH
Q ss_conf 68816864698889-999999861-----98899999974031020544445317-5-------------0699999999
Q gi|254780627|r 225 PNLRVVYLTAEYFM-WRFASAIRD-----NCALNLKDSLRNIDLLLIDDMQFLQG-K-------------LIQHEFCHLL 284 (502)
Q Consensus 225 ~~~~v~y~~~e~F~-~~~~~a~~~-----~~~~~fr~~~r~~DvLliDDiqfl~g-k-------------~tqee~f~~~ 284 (502)
+...++=+++.... .+|-.+-+. +++++.-+-=-+.=.+|||.|.-|+- + +.-.-++.-+
T Consensus 210 ~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQl 289 (423)
T KOG0744 210 YKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQL 289 (423)
T ss_pred CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 44069997046788988712113899999999999717896899980787888999875413799821899999999989
Q ss_pred HHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 998856987999648756761363034576530211577515888999999999998864311689789899
Q gi|254780627|r 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV 356 (502)
Q Consensus 285 n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v 356 (502)
|.|.....-+|+|...--. .++.-++.|- ..+.-|.+|..+.|..|++.-+++.. ..|+.++...
T Consensus 290 DrlK~~~NvliL~TSNl~~---siD~AfVDRA--Di~~yVG~Pt~~ai~~IlkscieEL~--~~gIi~~~~~ 354 (423)
T KOG0744 290 DRLKRYPNVLILATSNLTD---SIDVAFVDRA--DIVFYVGPPTAEAIYEILKSCIEELI--SSGIILFHQR 354 (423)
T ss_pred HHHCCCCCEEEEECCCHHH---HHHHHHHHHH--HHEEECCCCCHHHHHHHHHHHHHHHH--HCCEEEEECC
T ss_conf 9860479779996262677---7788861175--42110389639999999999999998--6384321000
No 126
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.0013 Score=45.58 Aligned_cols=257 Identities=19% Similarity=0.256 Sum_probs=145.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH-CC----CCCEEEEEHHHHHHHHH
Q ss_conf 28861478999999998241001365555548986278888579999999999863-06----88168646988899999
Q gi|254780627|r 168 IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR-QP----NLRVVYLTAEYFMWRFA 242 (502)
Q Consensus 168 VVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~-~~----~~~v~y~~~e~F~~~~~ 242 (502)
|+|-..+.-. +.+-..+ .+-.||++ -|.+|+|||-+..+.+..+... -| +.+++.+.- ..++
T Consensus 172 vIGRd~EI~r-----~iqIL~R---R~KNNPvL-iGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~----g~Lv 238 (786)
T COG0542 172 VIGRDEEIRR-----TIQILSR---RTKNNPVL-VGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL----GSLV 238 (786)
T ss_pred CCCHHHHHHH-----HHHHHHC---CCCCCCEE-ECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEECH----HHHH
T ss_conf 7374799999-----9999835---68899847-66898889999989999974699997875887997148----7674
Q ss_pred HHHH-CCCHHH-HHHHHHH-----CCHHHHHHHHHHCCC-CH---HHHHHHHHHHHHHCCCEEEEECCCCHHHHC---CC
Q ss_conf 9986-198899-9999740-----310205444453175-06---999999999988569879996487567613---63
Q gi|254780627|r 243 SAIR-DNCALN-LKDSLRN-----IDLLLIDDMQFLQGK-LI---QHEFCHLLNSLLDSAKQVVAAADRPPSELE---SL 308 (502)
Q Consensus 243 ~a~~-~~~~~~-fr~~~r~-----~DvLliDDiqfl~gk-~t---qee~f~~~n~l~~~gkqiv~tsd~~P~~l~---~l 308 (502)
.+-+ .|..++ +|.-... -=+|.||-||-+.|- ++ ..-.-+++.-...+|.--++.+-.. .|-. -=
T Consensus 239 AGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~g~a~DAaNiLKPaLARGeL~~IGATT~-~EYRk~iEK 317 (786)
T COG0542 239 AGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTL-DEYRKYIEK 317 (786)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCH-HHHHHHHHH
T ss_conf 6465357389999999999851798499982355405777666665125664677874587379973558-999887330
Q ss_pred CHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCH--HHH----HHHHHHHHHHH
Q ss_conf 034576530211577515888999999999998864311689789899999985027888--999----99999999986
Q gi|254780627|r 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG--REL----DGAFNQLVFRH 382 (502)
Q Consensus 309 ~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~v--R~L----egal~~l~~~~ 382 (502)
+..|.-||+. +.+..|+.+.-+.||+- ++.......++.++++++..-+.-...-+ |.| .-.+....++.
T Consensus 318 D~AL~RRFQ~---V~V~EPs~e~ti~ILrG-lk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~A~~ 393 (786)
T COG0542 318 DAALERRFQK---VLVDEPSVEDTIAILRG-LKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARV 393 (786)
T ss_pred CHHHHHCCCE---EECCCCCHHHHHHHHHH-HHHHHHHCCCCEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 6677846751---02799898999999987-7888877069643379999999999864556789946777889999999
Q ss_pred HHC--CCCCHH----------------------HHHHHHHHHHCC-----------CCCCCCCHHHHHHHHHHHHCCCHH
Q ss_conf 302--468778----------------------899999876303-----------788757989999999998099999
Q gi|254780627|r 383 SFA--PILTAE----------------------IADELLSHLVNT-----------GETKKMRIEDIQRMVAKHYNISRN 427 (502)
Q Consensus 383 ~~~--~~~~~~----------------------~~~~~l~~~~~~-----------~~~~~i~~~~I~~~V~~~~~i~~~ 427 (502)
.+. .+..++ ..+..+..+... -+. .++.+.|-++|++..||++.
T Consensus 394 ~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~Ia~vv~~~TgIPv~ 472 (786)
T COG0542 394 RLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEA-EVDEDDIAEVVARWTGIPVA 472 (786)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHCCCHH
T ss_conf 72034884056899999998888988744036888888778998754100567888762-26798999999998789836
Q ss_pred HHHCCCCCHHHCHHHH
Q ss_conf 9408887740144579
Q gi|254780627|r 428 DLLSNRRVRTVVRPRQ 443 (502)
Q Consensus 428 ~l~s~~R~~~i~~~Rq 443 (502)
.+...-+.+-....+.
T Consensus 473 ~l~~~e~~kll~le~~ 488 (786)
T COG0542 473 KLLEDEKEKLLNLERR 488 (786)
T ss_pred HHCHHHHHHHHHHHHH
T ss_conf 4133258899867999
No 127
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.0017 Score=44.93 Aligned_cols=227 Identities=18% Similarity=0.262 Sum_probs=130.5
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHH-CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHH
Q ss_conf 7644788763288614789999999982-410013655555489862788885799999999998630688168646988
Q gi|254780627|r 158 LDSRFVFSTFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 (502)
Q Consensus 158 LNpryTFDnFVVG~sN~lA~aAAkaVAe-~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~ 236 (502)
+|-.-.+..=|+|...... +.+.+|-. .-|-.-+..+---++.-||+|+|||.|..|++..+... +...+-+.--+
T Consensus 483 l~le~~L~~rViGQd~AV~-~v~~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DMSE 559 (786)
T COG0542 483 LNLERRLKKRVIGQDEAVE-AVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD--EQALIRIDMSE 559 (786)
T ss_pred HHHHHHHHCCEECHHHHHH-HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC--CCCCEEECHHH
T ss_conf 8679997365017399999-99999999856999999873578866788656999999999996599--74445545687
Q ss_pred HHHHHHHHHHCCC---------HHHHHHHHH--HCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHHC--------CCEEE
Q ss_conf 8999999986198---------899999974--0310205444453175069999999999--8856--------98799
Q gi|254780627|r 237 FMWRFASAIRDNC---------ALNLKDSLR--NIDLLLIDDMQFLQGKLIQHEFCHLLNS--LLDS--------AKQVV 295 (502)
Q Consensus 237 F~~~~~~a~~~~~---------~~~fr~~~r--~~DvLliDDiqfl~gk~tqee~f~~~n~--l~~~--------gkqiv 295 (502)
|+.+..-+---|. .-.+-+..| -.-|+|+|.|.- +.....+-|+++|+. |.+. +--||
T Consensus 560 y~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEK-AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiII 638 (786)
T COG0542 560 YMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEK-AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIII 638 (786)
T ss_pred HHHHHHHHHHHCCCCCCCEECCCCCHHHHHHCCCCEEEEECHHHH-CCHHHHHHHHHHHCCCCEECCCCCEEECCEEEEE
T ss_conf 777877998727999872006554003766069986888412644-0889999999984678055489988843002899
Q ss_pred EECCCCHHHHC------------------------CCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHH---H-C
Q ss_conf 96487567613------------------------630345765302115775158889999999999988643---1-1
Q gi|254780627|r 296 AAADRPPSELE------------------------SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK---E-D 347 (502)
Q Consensus 296 ~tsd~~P~~l~------------------------~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~---~-~ 347 (502)
+||.---..+. .|.+.+..|+.. ++.-.+-+.++-..|+..++..-.. + .
T Consensus 639 mTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~--II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~ 716 (786)
T COG0542 639 MTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDE--IIPFNPLSKEVLERIVDLQLNRLAKRLAERG 716 (786)
T ss_pred EECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCC--EEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 84502659897531343210046788999999985389989851261--7850679989999999999999999998689
Q ss_pred CCCCCCHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 68978989999998502788---89999999999998630246877889999987
Q gi|254780627|r 348 PKLNINEEVLMHVARTVTTS---GRELDGAFNQLVFRHSFAPILTAEIADELLSH 399 (502)
Q Consensus 348 ~~~~l~~~v~~~la~~~~~~---vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~ 399 (502)
-.+.+++++.+||++..... -|-|.-++.+- +--.+++.+|..
T Consensus 717 i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~---------i~~~La~~iL~~ 762 (786)
T COG0542 717 ITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQE---------IEDPLADEILFG 762 (786)
T ss_pred CEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHH---------HHHHHHHHHHHC
T ss_conf 5599888999999996468776736799999999---------989999999846
No 128
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.81 E-value=0.00024 Score=50.97 Aligned_cols=204 Identities=20% Similarity=0.336 Sum_probs=119.4
Q ss_pred CCCHHHHHHHCCCCCHHH--HHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH-
Q ss_conf 764478876328861478--99999999824100136555554898627888857999999999986306881686469-
Q gi|254780627|r 158 LDSRFVFSTFIEGSSNRV--ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA- 234 (502)
Q Consensus 158 LNpryTFDnFVVG~sN~l--A~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~- 234 (502)
+..+||||+.| |.|-.| +..-|+.+|..+ -|..|+|.||.||--+.|||-|.--+. +...+-+++
T Consensus 238 ~~a~y~f~~Ii-g~S~~m~~~~~~akr~A~td---------stVLi~GESGTGKElfA~~IH~~S~R~--~~PFIaiNCa 305 (560)
T COG3829 238 LKAKYTFDDII-GESPAMLRVLELAKRIAKTD---------STVLILGESGTGKELFARAIHNLSPRA--NGPFIAINCA 305 (560)
T ss_pred CCCCCCHHHHC-CCCHHHHHHHHHHHHHCCCC---------CCEEEECCCCCCHHHHHHHHHHCCCCC--CCCEEEEECC
T ss_conf 44536610020-58999999999998633899---------828995378866899999987448434--7980787643
Q ss_pred ---------HHHHHH---HHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHH--H--------HHCCC
Q ss_conf ---------888999---9999861988999999740310205444453175069999999999--8--------85698
Q gi|254780627|r 235 ---------EYFMWR---FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNS--L--------LDSAK 292 (502)
Q Consensus 235 ---------e~F~~~---~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~--l--------~~~gk 292 (502)
|-|-.+ |.-|.+.|+.--|- .-+---|.+|-|-.+. +..|--|+-.+-+ + +.-.=
T Consensus 306 AiPe~LlESELFGye~GAFTGA~~~GK~GlfE--~A~gGTLFLDEIgemp-l~LQaKLLRVLQEkei~rvG~t~~~~vDV 382 (560)
T COG3829 306 AIPETLLESELFGYEKGAFTGASKGGKPGLFE--LANGGTLFLDEIGEMP-LPLQAKLLRVLQEKEIERVGGTKPIPVDV 382 (560)
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE--ECCCCEEEEHHHCCCC-HHHHHHHHHHHHHCEEEECCCCCCEEEEE
T ss_conf 38888888887276776424644579976054--4169837712320399-89999999987535378537887535678
Q ss_pred EEEEECCCCHHHH---CCCCHHHHHHHHCCEEEEECCC-------CHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHH-
Q ss_conf 7999648756761---3630345765302115775158-------889999999999988643116897-898999999-
Q gi|254780627|r 293 QVVAAADRPPSEL---ESLDPRIRSRLQGGVSVPLGLH-------DYEMRFSILKNRLAISQKEDPKLN-INEEVLMHV- 360 (502)
Q Consensus 293 qiv~tsd~~P~~l---~~l~~rL~SR~~~Gl~~~i~~P-------d~e~r~~Il~~k~~~~~~~~~~~~-l~~~v~~~l- 360 (502)
+||-+..+.|.++ ..|-+-|.=|+. |++|.-| |.+.-...+-.|... ...+.+. ++++++..|
T Consensus 383 RIIAATN~nL~~~i~~G~FReDLYYRLN---V~~i~iPPLReR~eDI~~L~~~Fl~k~s~--~~~~~v~~ls~~a~~~L~ 457 (560)
T COG3829 383 RIIAATNRNLEKMIAEGTFREDLYYRLN---VIPITIPPLRERKEDIPLLAEYFLDKFSR--RYGRNVKGLSPDALALLL 457 (560)
T ss_pred EEEECCCCCHHHHHHCCCCHHHHEEEEC---EEEECCCCCCCCCCHHHHHHHHHHHHHHH--HCCCCCCCCCHHHHHHHH
T ss_conf 9994257589999863961655300304---01114777233820189999999999998--728876668999999998
Q ss_pred HHHCCCCHHHHHHHHHHHHHH
Q ss_conf 850278889999999999998
Q gi|254780627|r 361 ARTVTTSGRELDGAFNQLVFR 381 (502)
Q Consensus 361 a~~~~~~vR~Legal~~l~~~ 381 (502)
+-+-.|||||||-++-+++..
T Consensus 458 ~y~WPGNVRELeNviER~v~~ 478 (560)
T COG3829 458 RYDWPGNVRELENVIERAVNL 478 (560)
T ss_pred HCCCCCHHHHHHHHHHHHHHC
T ss_conf 689996099999999999810
No 129
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=97.80 E-value=0.00061 Score=48.01 Aligned_cols=211 Identities=16% Similarity=0.160 Sum_probs=121.8
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-HCCCCCEE--EEEHHHHHH
Q ss_conf 887632886147899999999824100136555554898627888857999999999986-30688168--646988899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK-RQPNLRVV--YLTAEYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~-~~~~~~v~--y~~~e~F~~ 239 (502)
+|+..| |...-. .+-..++.. |+.. .-....|.-|+|||-+-.-++..+.- ..+...-+ |-++.....
T Consensus 14 ~f~~~~-gq~~~~-~~l~~~~~~--~~~~-----~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~c~~i~~ 84 (705)
T PRK05648 14 SFREMV-GQTHVL-KALINALDN--QRLH-----HAYLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSVCREIDE 84 (705)
T ss_pred CHHHHC-CHHHHH-HHHHHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 576632-819999-999999970--9863-----0465007898889899999999867789998897877600466624
Q ss_pred H-H-----HHHHHCCCHHHHHHH-----HH----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 9-9-----999861988999999-----74----0310205444453175069999999999885698799964875676
Q gi|254780627|r 240 R-F-----ASAIRDNCALNLKDS-----LR----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 240 ~-~-----~~a~~~~~~~~fr~~-----~r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
- | ++|-.+..+++.|+- |. ..-|.|||.||.|+.. .-+-|+-|+.+==.+-|-|.-|.| |..
T Consensus 85 ~~~~d~~e~d~as~~~v~~~r~~~~~~~~~p~~~~~kv~~idevhmls~~-~fnallktleepp~~v~f~~att~--~~k 161 (705)
T PRK05648 85 GRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRYKVYLIDEVHMLSSH-SFNALLKTLEEPPPHVKFLLATTD--PQK 161 (705)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCHH-HHHHHHHHCCCCCCCEEEEEECCC--HHH
T ss_conf 89776344515544788999999985551776774579998426541799-999998740479754599984287--353
Q ss_pred HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
+.--..||+ +...+..-..+.-..-|+.- ...+++..+++.+..||....|++|+--+.+.+.+++.
T Consensus 162 ---~p~t~~src---~~~~~~~~~~~~~~~~l~~~-----~~~e~~~~~~~~~~~~~~~~~g~~rd~ls~~dq~~~~~-- 228 (705)
T PRK05648 162 ---LPVTILSRC---LQFSLKNMSPERVVEHLSHV-----LGAENVPFEEDALWLLGRAADGSMRDAMSLTDQAIAFG-- 228 (705)
T ss_pred ---CCHHHHHHH---HHCCCCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--
T ss_conf ---758999766---43023689999999999999-----99759977899999999974896777999999998606--
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24687788999998
Q gi|254780627|r 385 APILTAEIADELLS 398 (502)
Q Consensus 385 ~~~~~~~~~~~~l~ 398 (502)
++.++.+.++..|+
T Consensus 229 ~~~~~~~~v~~mlg 242 (705)
T PRK05648 229 EGKVLAADVRAMLG 242 (705)
T ss_pred CCCCCHHHHHHHHC
T ss_conf 88407999999858
No 130
>KOG0728 consensus
Probab=97.77 E-value=0.0025 Score=43.63 Aligned_cols=199 Identities=18% Similarity=0.254 Sum_probs=112.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHH-HHH-HHHHHCCHHHHHHHHHHC----
Q ss_conf 89862788885799999999998630688168646988899999998619889-999-997403102054444531----
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL-NLK-DSLRNIDLLLIDDMQFLQ---- 272 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~-~fr-~~~r~~DvLliDDiqfl~---- 272 (502)
..+||++|.|||-|..|++|+ ..+..+-++..+.+..|+--= .+-+. -|- .+-..-.+..+|.|.-+.
T Consensus 184 vlLygppgtGktLlaraVahh-----t~c~firvsgselvqk~igeg-srmvrelfvmarehapsiifmdeidsigs~r~ 257 (404)
T KOG0728 184 VLLYGPPGTGKTLLARAVAHH-----TDCTFIRVSGSELVQKYIGEG-SRMVRELFVMAREHAPSIIFMDEIDSIGSSRV 257 (404)
T ss_pred EEEECCCCCCHHHHHHHHHHH-----CCEEEEEECHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCEEEEHHCCCCCCCCC
T ss_conf 488469997562999998754-----140799964499999985013-89999999998750882675000012123434
Q ss_pred ----C-C-CHHHHHHHHHHH---HHH-CCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf ----7-5-069999999999---885-69879996487567613630345765302115775158889999999999988
Q gi|254780627|r 273 ----G-K-LIQHEFCHLLNS---LLD-SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 (502)
Q Consensus 273 ----g-k-~tqee~f~~~n~---l~~-~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~ 342 (502)
| . ..|.-.+.++|. +-. .+=.+|++..|- +-|++-|.--=.-.--.+..||+-+.|..||+---..
T Consensus 258 e~~~ggdsevqrtmlellnqldgfeatknikvimatnri----dild~allrpgridrkiefp~p~e~ar~~ilkihsrk 333 (404)
T KOG0728 258 ESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRI----DILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRK 333 (404)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC----CCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 578986389999999999740240003662699841642----2246866387754555648998778887899885553
Q ss_pred HHHHCCCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHC-CC-CCHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 643116897898999999850278-8899999999999986302-46-87788999998763037887579899
Q gi|254780627|r 343 SQKEDPKLNINEEVLMHVARTVTT-SGRELDGAFNQLVFRHSFA-PI-LTAEIADELLSHLVNTGETKKMRIED 413 (502)
Q Consensus 343 ~~~~~~~~~l~~~v~~~la~~~~~-~vR~Legal~~l~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~i~~~~ 413 (502)
. -.-+|+. +.-||+...+ +--|+.|..+.-..|+--. +. +|-+.-.-++.........+..++.+
T Consensus 334 m-nl~rgi~-----l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm~k~~e~nms~~k 401 (404)
T KOG0728 334 M-NLTRGIN-----LRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKK 401 (404)
T ss_pred H-HHHCCCC-----HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 0-1330667-----899998678986302543433545788876520023888999999997217612324988
No 131
>KOG0731 consensus
Probab=97.77 E-value=0.0022 Score=44.02 Aligned_cols=223 Identities=20% Similarity=0.204 Sum_probs=119.1
Q ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCE--EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHH
Q ss_conf 6447887632886147899999999824100136555554--89862788885799999999998630688168646988
Q gi|254780627|r 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP--LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 (502)
Q Consensus 159 NpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NP--Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~ 236 (502)
+..-+|+++.=.+.=+.=..=--..-.||.+-.-....=| ..|.||+|.|||-|..|++-|. +.-.+-+++.+
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~svSGSE 379 (774)
T KOG0731 305 NTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSVSGSE 379 (774)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCC-----CCCEEEECHHH
T ss_conf 9887601026708999999999998439899987477676751787899986789999885305-----89646413378
Q ss_pred HHHHHHHHHHCCCH-HHHHHHHH-HCCHHHHHHHHHHCCCC-------HHHHHHHHHHHHHH-------CCCEEEEECCC
Q ss_conf 89999999861988-99999974-03102054444531750-------69999999999885-------69879996487
Q gi|254780627|r 237 FMWRFASAIRDNCA-LNLKDSLR-NIDLLLIDDMQFLQGKL-------IQHEFCHLLNSLLD-------SAKQVVAAADR 300 (502)
Q Consensus 237 F~~~~~~a~~~~~~-~~fr~~~r-~~DvLliDDiqfl~gk~-------tqee~f~~~n~l~~-------~gkqiv~tsd~ 300 (502)
|+.-|+.. ..-.+ +-|...=. .--+.-||+|.-+++++ -|.|==.|||.|.- .+.-||+++..
T Consensus 380 FvE~~~g~-~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tn 458 (774)
T KOG0731 380 FVEMFVGV-GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATN 458 (774)
T ss_pred HHHHHCCC-CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 88876034-34888999987432698079714542003125566667888078889998878752776778479981168
Q ss_pred CHHHHCCCCHHH--HHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH--HHHHHHHCCCCH-HHHHHHH
Q ss_conf 567613630345--76530211577515888999999999998864311689789899--999985027888-9999999
Q gi|254780627|r 301 PPSELESLDPRI--RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV--LMHVARTVTTSG-RELDGAF 375 (502)
Q Consensus 301 ~P~~l~~l~~rL--~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v--~~~la~~~~~~v-R~Legal 375 (502)
-|..| +.-| -.||-.+ +.|..||..-|..|++.-+. ++.++.|- +.-||.+..+.. -+|--.+
T Consensus 459 r~d~l---d~allrpGRfdr~--i~i~~p~~~~r~~i~~~h~~-------~~~~~~e~~dl~~~a~~t~gf~gadl~n~~ 526 (774)
T KOG0731 459 RPDIL---DPALLRPGRFDRQ--IQIDLPDVKGRASILKVHLR-------KKKLDDEDVDLSKLASLTPGFSGADLANLC 526 (774)
T ss_pred CCCCC---CHHHCCCCCCCCC--EECCCCCHHHHHHHHHHHHH-------CCCCCCCHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 86642---8876498755552--32469851416899999862-------157763156799998608999678998642
Q ss_pred HHHHHHHH--HCCCCCHHHHHHHHHH
Q ss_conf 99999863--0246877889999987
Q gi|254780627|r 376 NQLVFRHS--FAPILTAEIADELLSH 399 (502)
Q Consensus 376 ~~l~~~~~--~~~~~~~~~~~~~l~~ 399 (502)
|.....+. -...++..-...++..
T Consensus 527 neaa~~a~r~~~~~i~~~~~~~a~~R 552 (774)
T KOG0731 527 NEAALLAARKGLREIGTKDLEYAIER 552 (774)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 49999998733673015649999999
No 132
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00067 Score=47.76 Aligned_cols=211 Identities=14% Similarity=0.196 Sum_probs=117.1
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHH---HHH
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630688168646988---899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY---FMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~---F~~ 239 (502)
+|+..| |... ...+-..++.. |+.. .-....|.-|+|||-+-.-++..+.-...-..--|-.++. ...
T Consensus 14 ~f~~~~-gq~~-~~~~l~~~~~~--~~~~-----~a~lf~g~rg~gkt~~ar~~a~~lnc~~~~~~~pc~~c~~c~~i~~ 84 (663)
T PRK08770 14 RFAELV-GQEH-VVRALSNALDS--GRVH-----HAFLFTGTRGVGKTTIARIFAKSLNCETGTSADPCGQCPACLDIDA 84 (663)
T ss_pred CHHHHC-CCHH-HHHHHHHHHHC--CCCC-----EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 464522-8599-99999999970--9974-----0476227998888899999999867899999997877877898854
Q ss_pred -HH-----HHHHHCCCHHHHHHHHH---------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf -99-----99986198899999974---------0310205444453175069999999999885698799964875676
Q gi|254780627|r 240 -RF-----ASAIRDNCALNLKDSLR---------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 240 -~~-----~~a~~~~~~~~fr~~~r---------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
.| ++|-.+..+++.|+-.. ..-|.|||.||.|+.. .-+-|+-|+.+==.+=|-|.-|.| |.
T Consensus 85 ~~~~d~~e~daas~~~v~~~r~~~~~~~~~p~~~~~kvy~idevhmls~~-~fna~lktleepp~~v~f~~att~--~~- 160 (663)
T PRK08770 85 GRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKFKVYLIDEVHMLSKA-AFNALLKTLEEPPEHVKFLLATTD--PQ- 160 (663)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHH-HHHHHHHHHCCCCCCEEEEEECCC--HH-
T ss_conf 89886588646765888999999984435887774369997004332899-999998740278644289985487--33-
Q ss_pred HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
.+..-+.||+.. .++..-..+.-..-|+.- ...+++..+++.+..||+.-.|++|+--..+.+.+++.
T Consensus 161 --k~p~t~~src~~---f~~~~~~~~~~~~~l~~~-----~~~e~~~~~~~~~~~~~~~~~gs~rd~lsl~~q~~~~~-- 228 (663)
T PRK08770 161 --KLPVTVLSRCLQ---FNLKRLDEDQIQGQMTRI-----LAAEQIESDPSAIVQLSKAADGSLRDGLSLLDQAIAYA-- 228 (663)
T ss_pred --HCCHHHHHHHHH---CCCCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--
T ss_conf --374899988876---343779999999999999-----99839976999999999974785677888999999866--
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24687788999998
Q gi|254780627|r 385 APILTAEIADELLS 398 (502)
Q Consensus 385 ~~~~~~~~~~~~l~ 398 (502)
++.++.+.+...|+
T Consensus 229 ~~~~~~~~v~~mlg 242 (663)
T PRK08770 229 GGALREDVVRTMLG 242 (663)
T ss_pred CCCCCHHHHHHHHC
T ss_conf 89768999999848
No 133
>KOG1514 consensus
Probab=97.76 E-value=0.0038 Score=42.43 Aligned_cols=197 Identities=16% Similarity=0.136 Sum_probs=113.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---HCCCCCEEEE--EHHHHH------HHHHHHHHC------CCHHHHHHHHH--
Q ss_conf 4898627888857999999999986---3068816864--698889------999999861------98899999974--
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIK---RQPNLRVVYL--TAEYFM------WRFASAIRD------NCALNLKDSLR-- 258 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~---~~~~~~v~y~--~~e~F~------~~~~~a~~~------~~~~~fr~~~r-- 258 (502)
-+||.|-+|.||||..+++-+++.. +..-....|+ .+-.|+ ...-.++-. ..++....+|-
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred EEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 79984699988321299999999987750578986079871446158899999999975557430778899998654167
Q ss_pred ----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHC--CCCHHHHHHHHCCEEEEECCCCHHHH
Q ss_conf ----031020544445317506999999999988569879996487567613--63034576530211577515888999
Q gi|254780627|r 259 ----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELE--SLDPRIRSRLQGGVSVPLGLHDYEMR 332 (502)
Q Consensus 259 ----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~--~l~~rL~SR~~~Gl~~~i~~Pd~e~r 332 (502)
.--|+|||.+..|-++ .|+-++++||--...+-.+|+-+-.--.+|+ -|..|..||+.. --...+|=+.+--
T Consensus 504 k~~~~~~VvLiDElD~Lvtr-~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~-tRi~F~pYth~qL 581 (767)
T KOG1514 504 KPKRSTTVVLIDELDILVTR-SQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGL-TRICFQPYTHEQL 581 (767)
T ss_pred CCCCCCEEEEECCHHHHHCC-CHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHCCCHHHHCCC-EEEECCCCCHHHH
T ss_conf 87878779996357877352-098897774077678986699995165647798854311233065-0551377889999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHH--HC-------CCCCHHHHHHHHHHH
Q ss_conf 99999999886431168978989999998502---7888999999999999863--02-------468778899999876
Q gi|254780627|r 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTV---TTSGRELDGAFNQLVFRHS--FA-------PILTAEIADELLSHL 400 (502)
Q Consensus 333 ~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~---~~~vR~Legal~~l~~~~~--~~-------~~~~~~~~~~~l~~~ 400 (502)
-.|+...+... -.+..++++++|.++ +|+.|.-.-.+.+..--+. .. ..+++..+.+++..+
T Consensus 582 q~Ii~~RL~~~------~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em 655 (767)
T KOG1514 582 QEIISARLKGL------DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEM 655 (767)
T ss_pred HHHHHHHCCCH------HHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHH
T ss_conf 99999860315------431424899999887750422788889989999975422134555533244329999999987
Q ss_pred HC
Q ss_conf 30
Q gi|254780627|r 401 VN 402 (502)
Q Consensus 401 ~~ 402 (502)
+.
T Consensus 656 ~~ 657 (767)
T KOG1514 656 LA 657 (767)
T ss_pred HH
T ss_conf 50
No 134
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=97.75 E-value=2.5e-05 Score=57.89 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=61.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH--HHHHHHH--HCCC----HHHHHHHHHHCCHHHHHHHH
Q ss_conf 48986278888579999999999863068816864698889--9999998--6198----89999997403102054444
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM--WRFASAI--RDNC----ALNLKDSLRNIDLLLIDDMQ 269 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~--~~~~~a~--~~~~----~~~fr~~~r~~DvLliDDiq 269 (502)
|++++|++|.|||+|.+.++..+.. ..+.+++....+ .+++-.. ..+. -..|-.-.++-.+|++|.|.
T Consensus 1 ~vll~Gp~G~GKT~la~~la~~l~~----~~~~~i~~~~~~~~~dl~G~~~~~~~~~~~~~g~l~~a~~~g~vl~lDEin 76 (139)
T pfam07728 1 GVLLVGPPGTGKSELAERLAAALSN----RPVFYVQLTRDTTEEDLKGRRNIANGTTSWVDGPLVRAAREGEIAVLDEIN 76 (139)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCC----CCCHHHCCCCCCCHHHCCCCEECCCCCEEEECCHHHCCCCCCCEEEECCHH
T ss_conf 9899989975699999999998079----831112146556522205734237993578155141010128689963434
Q ss_pred HHCCCCHHHHHHHHHHHHH----H-------------CCCEEEEECCCCHHHHCCCCHHHHHHH
Q ss_conf 5317506999999999988----5-------------698799964875676136303457653
Q gi|254780627|r 270 FLQGKLIQHEFCHLLNSLL----D-------------SAKQVVAAADRPPSELESLDPRIRSRL 316 (502)
Q Consensus 270 fl~gk~tqee~f~~~n~l~----~-------------~gkqiv~tsd~~P~~l~~l~~rL~SR~ 316 (502)
... ..+|..|+..++.-. . .+=++|.|..-.+.....|++.|.+||
T Consensus 77 ~a~-~~v~~~L~~~le~~~~~~~~~~~~~~~~~~~~~~~f~viaT~N~~~~g~~~l~~Al~~RF 139 (139)
T pfam07728 77 RAN-PDVLNSLLSLLDERRLLLPEGGELVKVAPDDFAKRFRLIATMNPLDRGLNELSPALRSRF 139 (139)
T ss_pred HCC-HHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHCCC
T ss_conf 489-999999999974896983689727336666789996999975896547800998997509
No 135
>KOG1969 consensus
Probab=97.71 E-value=0.0066 Score=40.70 Aligned_cols=156 Identities=21% Similarity=0.263 Sum_probs=89.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHH-------------HCCHHH
Q ss_conf 4898627888857999999999986306881686469888999999986198899999974-------------031020
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-------------NIDLLL 264 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r-------------~~DvLl 264 (502)
-|.++|+.|+|||-|.|-|+.+ .+-+|+=+.|-+ .++...|+++.- .--+|+
T Consensus 328 ilLL~GppGlGKTTLAHViAkq-----aGYsVvEINASD----------eRt~~~v~~kI~~avq~~s~l~adsrP~CLV 392 (877)
T KOG1969 328 ILLLCGPPGLGKTTLAHVIAKQ-----AGYSVVEINASD----------ERTAPMVKEKIENAVQNHSVLDADSRPVCLV 392 (877)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-----CCCEEEEECCCC----------CCCHHHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 6875368878724799999986-----285488732555----------4347889999999886411225688863599
Q ss_pred HHHHHHHCCCCHHHHHHHHHH--HHHHCCCE------------------EEEEC-CCCHHHHCCCCHHHHHHHHCCEEEE
Q ss_conf 544445317506999999999--98856987------------------99964-8756761363034576530211577
Q gi|254780627|r 265 IDDMQFLQGKLIQHEFCHLLN--SLLDSAKQ------------------VVAAA-DRPPSELESLDPRIRSRLQGGVSVP 323 (502)
Q Consensus 265 iDDiqfl~gk~tqee~f~~~n--~l~~~gkq------------------iv~ts-d~~P~~l~~l~~rL~SR~~~Gl~~~ 323 (502)
||.|.-=- +..-.-+.++++ .-+.-||| ||.-| |-.--.|..|-+ +.| ++-
T Consensus 393 iDEIDGa~-~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~-----~A~--ii~ 464 (877)
T KOG1969 393 IDEIDGAP-RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRP-----FAE--IIA 464 (877)
T ss_pred EECCCCCC-HHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCHHHHHCCC-----CEE--EEE
T ss_conf 84246872-8999999999974161421686632034555304654587789864755533331021-----048--999
Q ss_pred ECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 324 i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
.-+|. .+|+. .++.. ....+++..+--++.-|++-..++||. ++|.|-+-+.-
T Consensus 465 f~~p~-~s~Lv---~RL~~-IC~rE~mr~d~~aL~~L~el~~~DIRs---CINtLQfLa~~ 517 (877)
T KOG1969 465 FVPPS-QSRLV---ERLNE-ICHRENMRADSKALNALCELTQNDIRS---CINTLQFLASN 517 (877)
T ss_pred ECCCC-HHHHH---HHHHH-HHHHHCCCCCHHHHHHHHHHHCCHHHH---HHHHHHHHHHH
T ss_conf 56997-66899---99999-976415778878999999986130988---88899999970
No 136
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=97.70 E-value=0.00014 Score=52.66 Aligned_cols=90 Identities=22% Similarity=0.278 Sum_probs=56.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH--CC-C---------------------HHHHHHHHH
Q ss_conf 27888857999999999986306881686469888999999986--19-8---------------------899999974
Q gi|254780627|r 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR--DN-C---------------------ALNLKDSLR 258 (502)
Q Consensus 203 G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~--~~-~---------------------~~~fr~~~r 258 (502)
|+-|.||||||++|.+.+... + +.+.++|-.= +.|+. .+ + -...++++|
T Consensus 1 G~AGTGKS~ll~~i~~~l~~~--~-~~v~vtA~TG----iAA~~i~gG~TiHs~~gi~~~~~~~~~~~~~~~~~~~~~~~ 73 (418)
T pfam05970 1 GYGGTGKTFLWNALSARIRSR--G-KIVLNVASSG----IAALLLPGGRTAHSRFGIPLDIDEDSTCKIKRGSKLAELLK 73 (418)
T ss_pred CCCCCCHHHHHHHHHHHHHHC--C-CEEEEECCHH----HHHHCCCCCEEHHHCCCCCCCCCCCCCEEECCCHHHHHHHH
T ss_conf 979887999999999999768--9-8899989689----99851699873985269898877420112133778899874
Q ss_pred HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH-----------CCCEEEEECCCCHHHHC
Q ss_conf 0310205444453175069999999999885-----------69879996487567613
Q gi|254780627|r 259 NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLD-----------SAKQVVAAADRPPSELE 306 (502)
Q Consensus 259 ~~DvLliDDiqfl~gk~tqee~f~~~n~l~~-----------~gkqiv~tsd~~P~~l~ 306 (502)
.+|+|+||-|=.+. -++|..++.... -|.|+|+++| .-+|+
T Consensus 74 ~~~vLIIDEiSMv~-----~~lfd~id~~lr~i~~~~~~~PFGGiqvIl~GD--f~QLP 125 (418)
T pfam05970 74 KASLIIWDEAPMTH-----RHCFEALDRTLRDILKNTDDKPFGGKTVVLGGD--FRQIL 125 (418)
T ss_pred HCCEEEEECCCCCC-----HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC--HHHCC
T ss_conf 08799985411357-----899999999999987127876779747998244--76558
No 137
>KOG2035 consensus
Probab=97.66 E-value=0.0076 Score=40.26 Aligned_cols=249 Identities=16% Similarity=0.234 Sum_probs=146.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH-------------CCCCC---EEEEEHHHH---------------HHHHHHHHH
Q ss_conf 48986278888579999999999863-------------06881---686469888---------------999999986
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKR-------------QPNLR---VVYLTAEYF---------------MWRFASAIR 246 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~-------------~~~~~---v~y~~~e~F---------------~~~~~~a~~ 246 (502)
-|..|||||.||--.+.++-+++..- .|..+ +-++++..- ..+++.-+-
T Consensus 36 Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevA 115 (351)
T KOG2035 36 HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVA 115 (351)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCHHEEEEEEEEECCCCCEEEEEEECCCCEEEECHHHCCCCCHHHHHHHHHHHH
T ss_conf 07888889887211189999988578724505666788648886379999425651774734337511799999999987
Q ss_pred CCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECC
Q ss_conf 19889999997403102054444531750699999999998856987999648756761363034576530211577515
Q gi|254780627|r 247 DNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 (502)
Q Consensus 247 ~~~~~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~ 326 (502)
....-++. --|..-|++|-...-|. |.+|--|=-|... |.++-++|++|+..-. +-+-++|| .|.+.+..
T Consensus 116 Qt~qie~~-~qr~fKvvvi~ead~LT-~dAQ~aLRRTMEk-Ys~~~RlIl~cns~Sr----iIepIrSR---Cl~iRvpa 185 (351)
T KOG2035 116 QTQQIETQ-GQRPFKVVVINEADELT-RDAQHALRRTMEK-YSSNCRLILVCNSTSR----IIEPIRSR---CLFIRVPA 185 (351)
T ss_pred HHCCHHHC-CCCCEEEEEEECHHHHH-HHHHHHHHHHHHH-HHCCCEEEEEECCCCC----CHHHHHHH---EEEEECCC
T ss_conf 41413332-66654899980357650-8899999999999-8607169999267430----22677622---05876789
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-H-C--CC---CCHH-HHHHHHH
Q ss_conf 888999999999998864311689789899999985027888999999999999863-0-2--46---8778-8999998
Q gi|254780627|r 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-F-A--PI---LTAE-IADELLS 398 (502)
Q Consensus 327 Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~-~-~--~~---~~~~-~~~~~l~ 398 (502)
|..|.-..++.+-+ +.+++.+|++.+.-||+...+|.|.---.+-.+.+... + . .. ++-+ .++++-.
T Consensus 186 ps~eeI~~vl~~v~-----~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035 186 PSDEEITSVLSKVL-----KKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred CCHHHHHHHHHHHH-----HHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 98789999999999-----8733448499999999970643999999999998546543255787799449999999999
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 76303788757989999999998099999940888774014457999999998515687899988479843799999999
Q gi|254780627|r 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 (502)
Q Consensus 399 ~~~~~~~~~~i~~~~I~~~V~~~~~i~~~~l~s~~R~~~i~~~RqiamyL~r~~t~~s~~~IG~~fg~rdHsTV~~a~~k 478 (502)
.++.. -|+..+.+.-..-| ||++.- .-|+-|--=|.++++. -...+-|.-|++.--+
T Consensus 261 ~i~~e-----Qs~~~L~~vR~~LY-----eLL~~C-----IPP~~Ilk~Ll~~Ll~--------~~d~~~k~~~~~~Aa~ 317 (351)
T KOG2035 261 VILKE-----QSPAKLLEVRGRLY-----ELLSHC-----IPPNTILKELLEELLL--------KCDTQLKLEVIQHAAK 317 (351)
T ss_pred HHHHC-----CCHHHHHHHHHHHH-----HHHHCC-----CCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHH
T ss_conf 99860-----38788999999999-----998656-----9858899999999984--------5882448999999988
Q ss_pred HHHHHH
Q ss_conf 999986
Q gi|254780627|r 479 VEKMLE 484 (502)
Q Consensus 479 i~~~~~ 484 (502)
-+..+.
T Consensus 318 yEhRl~ 323 (351)
T KOG2035 318 YEHRLR 323 (351)
T ss_pred HHHHHH
T ss_conf 899986
No 138
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.62 E-value=0.00056 Score=48.32 Aligned_cols=72 Identities=25% Similarity=0.338 Sum_probs=48.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH---CC-C---------------HHHHH---HH
Q ss_conf 898627888857999999999986306881686469888999999986---19-8---------------89999---99
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR---DN-C---------------ALNLK---DS 256 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~---~~-~---------------~~~fr---~~ 256 (502)
..|+|++|.|||.|+..++..... ++.+++|++.|+-..+....+. .+ . .+... .+
T Consensus 2 ~li~g~~g~GKttl~~~~~~~~~~--~~~~~~~~~~ee~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--CCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 899989999899999999999876--399799998666448999999986224671307999359997699999999999
Q ss_pred HH---HCCHHHHHHHHHHC
Q ss_conf 74---03102054444531
Q gi|254780627|r 257 LR---NIDLLLIDDMQFLQ 272 (502)
Q Consensus 257 ~r---~~DvLliDDiqfl~ 272 (502)
++ ..+++++|+||.+.
T Consensus 80 ~~~~~~~vliiiDSit~~~ 98 (165)
T cd01120 80 LRERGGDDLIILDELTRLV 98 (165)
T ss_pred HHHCCCCEEEEEECHHHHH
T ss_conf 9986997799992889988
No 139
>KOG0733 consensus
Probab=97.61 E-value=0.00061 Score=48.03 Aligned_cols=151 Identities=22% Similarity=0.335 Sum_probs=98.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHH--CCHHHHHHHHHHCCC--
Q ss_conf 8986278888579999999999863068816864698889999999861988999999740--310205444453175--
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN--IDLLLIDDMQFLQGK-- 274 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~--~DvLliDDiqfl~gk-- 274 (502)
.++|||+|.|||-|..|++||.. ++.+-+-.-+.+|.||--. ++.+...=++-|+ --|.-+|.|.-|.-+
T Consensus 548 vLL~GPPGCGKTLlAKAVANEag-----~NFisVKGPELlNkYVGES-ErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~ 621 (802)
T KOG0733 548 VLLCGPPGCGKTLLAKAVANEAG-----ANFISVKGPELLNKYVGES-ERAVRQVFQRARASAPCVIFFDEIDALVPRRS 621 (802)
T ss_pred EEEECCCCCCHHHHHHHHHHHCC-----CCEEEECCHHHHHHHHHHH-HHHHHHHHHHHHCCCCEEEEECCHHHCCCCCC
T ss_conf 38757998618899999850304-----7547623889998774237-89999999986238983898511120276557
Q ss_pred --------CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHH--HHHHHCCEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf --------06999999999988569879996487567613630345--76530211577515888999999999998864
Q gi|254780627|r 275 --------LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI--RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 (502)
Q Consensus 275 --------~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL--~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~ 344 (502)
+.-..|+.-+|-+.++.+--|+++..-|.-++ +-+ -.||-- +.=+..|+-+.|.+||+.-
T Consensus 622 ~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiID---pAiLRPGRlDk--~LyV~lPn~~eR~~ILK~~----- 691 (802)
T KOG0733 622 DEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIID---PAILRPGRLDK--LLYVGLPNAEERVAILKTI----- 691 (802)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC---HHHCCCCCCCC--EEEECCCCHHHHHHHHHHH-----
T ss_conf 7775058999999998731621114259995068976555---65518775574--2450699878899999998-----
Q ss_pred HHCCCCCCCHHH-HHHHHHHCC
Q ss_conf 311689789899-999985027
Q gi|254780627|r 345 KEDPKLNINEEV-LMHVARTVT 365 (502)
Q Consensus 345 ~~~~~~~l~~~v-~~~la~~~~ 365 (502)
....+.+++++| ++-||.+..
T Consensus 692 tkn~k~pl~~dVdl~eia~~~~ 713 (802)
T KOG0733 692 TKNTKPPLSSDVDLDEIARNTK 713 (802)
T ss_pred HCCCCCCCCCCCCHHHHHHCCC
T ss_conf 5357998875458999851232
No 140
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.60 E-value=0.00097 Score=46.61 Aligned_cols=118 Identities=24% Similarity=0.367 Sum_probs=91.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCC-----------------------------
Q ss_conf 898627888857999999999986306881686469888999999986198-----------------------------
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC----------------------------- 249 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~----------------------------- 249 (502)
+.|-|+-|.|||-|.|-.+.-++.+ +.++.|+++|.=+.+|+.-+..=.
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~--g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~~~~ 108 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMN--GYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGRRSA 108 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEEECHHHHHHHHHHHHCCCCCHHHHHCCEEEEEEECCCCCCCCHHHH
T ss_conf 9998889854889999999988708--95489998403599999988863887168775062689993245422573778
Q ss_pred ------HHHHHHHHHHCCHHHHHHHHHHCCC---CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCE
Q ss_conf ------8999999740310205444453175---0699999999998856987999648756761363034576530211
Q gi|254780627|r 250 ------ALNLKDSLRNIDLLLIDDMQFLQGK---LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 (502)
Q Consensus 250 ------~~~fr~~~r~~DvLliDDiqfl~gk---~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl 320 (502)
+.+|. +.+..||++||-+--++-- ..-.+|+..+..|-+.||-||+|.+ |. .|++-+..|+.+--
T Consensus 109 ~~~L~~l~~~~-k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvh--p~---~l~e~~~~rirs~~ 182 (235)
T COG2874 109 RKLLDLLLEFI-KRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVH--PS---ALDEDVLTRIRSAC 182 (235)
T ss_pred HHHHHHHHHHH-HHHCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEC--HH---HCCHHHHHHHHHHH
T ss_conf 99999997557-75237789995343776526499999999999998728978999947--34---33789999998752
Q ss_pred EEEE
Q ss_conf 5775
Q gi|254780627|r 321 SVPL 324 (502)
Q Consensus 321 ~~~i 324 (502)
.+-+
T Consensus 183 d~~l 186 (235)
T COG2874 183 DVYL 186 (235)
T ss_pred HEEE
T ss_conf 0258
No 141
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.56 E-value=0.0017 Score=44.88 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=27.7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 9999999985156878999884798437999999999999861
Q gi|254780627|r 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 (502)
Q Consensus 443 qiamyL~r~~t~~s~~~IG~~fg~rdHsTV~~a~~ki~~~~~~ 485 (502)
.|-.+|+. ++|-.+|+...+ =+-.||=.-.+.|=.++.-
T Consensus 845 eVL~lLa~---GlSNkeIA~~L~-IS~~TVK~HlrnIy~KLgV 883 (903)
T PRK04841 845 QVLGLIYS---GYSNEQIAGELD-VAATTIKTHIRNLYQKLGI 883 (903)
T ss_pred HHHHHHHC---CCCHHHHHHHHC-CCHHHHHHHHHHHHHHCCC
T ss_conf 99999976---899999998819-9876999999999856599
No 142
>KOG0651 consensus
Probab=97.55 E-value=0.00061 Score=48.01 Aligned_cols=150 Identities=23% Similarity=0.391 Sum_probs=84.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHH-----CCHHHHHHHHHHCC
Q ss_conf 8986278888579999999999863068816864698889999999861988999999740-----31020544445317
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN-----IDLLLIDDMQFLQG 273 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~-----~DvLliDDiqfl~g 273 (502)
|.||||+|.|||-|..||+..+ ++..+.++|-.+...++- ....-.|+.||. --++.+|||+-..|
T Consensus 169 ~ll~GppGtGKTlla~~Vaa~m-----g~nfl~v~ss~lv~kyiG----EsaRlIRemf~yA~~~~pciifmdeiDAigG 239 (388)
T KOG0651 169 LLLYGPPGTGKTLLARAVAATM-----GVNFLKVVSSALVDKYIG----ESARLIRDMFRYAREVIPCIIFMDEIDAIGG 239 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHC-----CCCEEEEEHHHHHHHHCC----CHHHHHHHHHHHHHHHCCEEEEEHHHHHHCC
T ss_conf 6876799986459999999865-----985477447666330026----5788999999778652755775101231145
Q ss_pred CC-H---------HHHHHHHHHHHH---HCCC-EEEEECCCCHHHHCCCCHHHH--HHHHCCEEEEECCCCHHHHHHHHH
Q ss_conf 50-6---------999999999988---5698-799964875676136303457--653021157751588899999999
Q gi|254780627|r 274 KL-I---------QHEFCHLLNSLL---DSAK-QVVAAADRPPSELESLDPRIR--SRLQGGVSVPLGLHDYEMRFSILK 337 (502)
Q Consensus 274 k~-t---------qee~f~~~n~l~---~~gk-qiv~tsd~~P~~l~~l~~rL~--SR~~~Gl~~~i~~Pd~e~r~~Il~ 337 (502)
+. + |--|-++.|.+. ..|+ .+|+|..++- .|++-|. .|+.- -+.|..|....|+.|++
T Consensus 240 Rr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpd----tLdpaLlRpGRldr--k~~iPlpne~~r~~I~K 313 (388)
T KOG0651 240 RRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPD----TLDPALLRPGRLDR--KVEIPLPNEQARLGILK 313 (388)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCEEEECCCCC----CCCHHHCCCCCCCC--EECCCCCCHHHCEEEEE
T ss_conf 7733555205999999999987421401206631798538866----56655428752111--00268855442402676
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHCCC
Q ss_conf 99988643116897898999999850278
Q gi|254780627|r 338 NRLAISQKEDPKLNINEEVLMHVARTVTT 366 (502)
Q Consensus 338 ~k~~~~~~~~~~~~l~~~v~~~la~~~~~ 366 (502)
.-.. .-...-.+.++.+--+.+.+.+
T Consensus 314 ih~~---~i~~~Geid~eaivK~~d~f~g 339 (388)
T KOG0651 314 IHVQ---PIDFHGEIDDEAILKLVDGFNG 339 (388)
T ss_pred ECCC---CCCCCCCCCHHHHHHHHHCCCH
T ss_conf 2354---1133455458999988741570
No 143
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.53 E-value=0.00045 Score=48.97 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=36.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH
Q ss_conf 898627888857999999999986306881686469888999999986
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~ 246 (502)
..|||++|.|||+|+.-++....++ +.+|+|+++|.|..+-+..+-
T Consensus 26 tei~G~pG~GKTtl~lq~a~~~~~~--g~~vlYidtE~~~~er~~qi~ 71 (224)
T PRK09361 26 TQIYGPPGSGKTNICIQLAVEAARQ--GKKVIYIDTEGLSPERFKQIA 71 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHH
T ss_conf 9998999985999999999999974--990999678767889999985
No 144
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=97.50 E-value=0.00019 Score=51.65 Aligned_cols=138 Identities=19% Similarity=0.238 Sum_probs=81.1
Q ss_pred CCCCCHHHH--HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH
Q ss_conf 288614789--999999982410013655555489862788885799999999998630688168646988899999998
Q gi|254780627|r 168 IEGSSNRVA--LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 (502)
Q Consensus 168 VVG~sN~lA--~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~ 245 (502)
+||+|..|- +.-+..+|..+ .|++|.|.+|.||+.+-++|-..- .+.+...+-+++..+..+.+.+.
T Consensus 1 lIG~S~~m~~l~~~i~~~a~~~---------~pVLI~GE~GtGK~~lAr~IH~~S--~r~~~pfi~vnc~~~~~~~le~~ 69 (168)
T pfam00158 1 LIGESPAMQEVLELAKRVAPTD---------ATVLITGESGTGKELFARAIHQLS--PRADGPFVAVNCAAIPEELLESE 69 (168)
T ss_pred CEECCHHHHHHHHHHHHHHCCC---------CCEEEECCCCCCHHHHHHHHHHHC--CCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 9738999999999999995889---------988998999888899999999852--43568831256789987799998
Q ss_pred ----HCCC----HHHHHHHHH--HCCHHHHHHHHHHCCCCHHHHHHHHHHHH----------HHCCCEEEEECCCCHHHH
Q ss_conf ----6198----899999974--03102054444531750699999999998----------856987999648756761
Q gi|254780627|r 246 ----RDNC----ALNLKDSLR--NIDLLLIDDMQFLQGKLIQHEFCHLLNSL----------LDSAKQVVAAADRPPSEL 305 (502)
Q Consensus 246 ----~~~~----~~~fr~~~r--~~DvLliDDiqfl~gk~tqee~f~~~n~l----------~~~gkqiv~tsd~~P~~l 305 (502)
..+. ...-.-.+. +--.|.+|+|+.+. ...|..|++.++.- +..+-+||.+|.+.+.++
T Consensus 70 LFG~~~g~f~ga~~~~~G~le~A~gGTL~LdeI~~L~-~~~Q~~Ll~~L~~~~~~~~g~~~~~~~~vRiIast~~~L~~~ 148 (168)
T pfam00158 70 LFGHEKGAFTGAVSDRKGLFELADGGTLFLDEIGELP-LELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEA 148 (168)
T ss_pred HCCCCCCCCCCCCCCCCCCEEECCCCEEECCCHHHCC-HHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEECCCCHHHH
T ss_conf 7587667668987578996422699878802441399-999999999985796997799845888549999659889999
Q ss_pred C---CCCHHHHHHHH
Q ss_conf 3---63034576530
Q gi|254780627|r 306 E---SLDPRIRSRLQ 317 (502)
Q Consensus 306 ~---~l~~rL~SR~~ 317 (502)
- .|.+.|.-|+.
T Consensus 149 v~~G~Fr~DLyyrLn 163 (168)
T pfam00158 149 VAEGRFREDLYYRLN 163 (168)
T ss_pred HHCCCCHHHHHHHHC
T ss_conf 883996399888865
No 145
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.49 E-value=0.0016 Score=45.14 Aligned_cols=28 Identities=29% Similarity=0.207 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCH
Q ss_conf 89999999982410013655555489862788885
Q gi|254780627|r 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 (502)
Q Consensus 175 lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGK 209 (502)
=|+.|-+...|.|.. +..||..-+-.-|
T Consensus 134 ~a~nallKtlEePp~-------~~~Filatte~~k 161 (541)
T PRK05563 134 GAVNAFLKTLEEPPS-------NVIFILATTDPQK 161 (541)
T ss_pred HHHHHHHHHHHCCCC-------CCEEEEECCCCCC
T ss_conf 999999999854877-------7569997698442
No 146
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.47 E-value=0.0021 Score=44.24 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=41.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHC
Q ss_conf 548986278888579999999999863068816864698889999999861
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~ 247 (502)
...+|.|++|.|||-|.+-......++ +.+++|++.|+-..+++..++.
T Consensus 33 ~~~li~G~~G~GKt~~~~~f~~~~~~~--g~~~~~~~~ee~~~~~~~~~~~ 81 (241)
T PRK06067 33 SLILIEGENDTGKSVLSQQFVWGALNQ--GKRGLAITTENTSKSYLKQMES 81 (241)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEEECCCHHHHHHHHHH
T ss_conf 089998079988799999999999867--9829999942899999999998
No 147
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=97.46 E-value=0.002 Score=44.30 Aligned_cols=49 Identities=20% Similarity=0.179 Sum_probs=35.0
Q ss_pred CEEEEECCCCCCHHHHHHH-HHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHC
Q ss_conf 5489862788885799999-99999863068816864698889999999861
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQA-IANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~a-i~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~ 247 (502)
.-..|+|++|.|||-|..- +.+.+.+. +.+++|+|.|+-..+++..+..
T Consensus 20 s~~LI~G~pGsGKT~la~qfl~~ga~~~--ge~~lYis~ee~~~~l~~~~~~ 69 (231)
T pfam06745 20 RVVLITGGPGTGKTIFGLQFLYNGALEY--GEPGVYVTLEEPPEDLRENAKS 69 (231)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHHHHHHH
T ss_conf 6999985897259999999999999865--8968999813799999999998
No 148
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.43 E-value=0.00054 Score=48.42 Aligned_cols=111 Identities=21% Similarity=0.249 Sum_probs=77.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH-------HHHHHHHH-----CCCHHHH---HHHHHHCCH
Q ss_conf 48986278888579999999999863068816864698889-------99999986-----1988999---999740310
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM-------WRFASAIR-----DNCALNL---KDSLRNIDL 262 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~-------~~~~~a~~-----~~~~~~f---r~~~r~~Dv 262 (502)
..++.||+|+|||-.+-=++-...-.+...+|..+|++.|- ..|..-+. -.+..+| -++++++|+
T Consensus 212 vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~~~~~dl 291 (412)
T PRK05703 212 VVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQLANCDL 291 (412)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCE
T ss_conf 69998888875676999999999997299817999837677779999999999719737984799999999987158997
Q ss_pred HHHHHHHHHCCC----CH-HHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHH
Q ss_conf 205444453175----06-999999999988569879996487567613630345
Q gi|254780627|r 263 LLIDDMQFLQGK----LI-QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 (502)
Q Consensus 263 LliDDiqfl~gk----~t-qee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL 312 (502)
.|||- +|. .. .+||-..+.....-...+|+++...+.++..+-+|.
T Consensus 292 ILIDT----aG~s~~d~~~~~eL~~~~~~~~~~~~~LVlsat~~~~dl~~i~~~f 342 (412)
T PRK05703 292 ILIDT----AGRSQRDPRLISELKALIENSKPIDVYLVLSATTKYRDLKDIVKHF 342 (412)
T ss_pred EEEEC----CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 99968----9889789999999999986248871899975989989999999984
No 149
>KOG0736 consensus
Probab=97.42 E-value=0.014 Score=38.40 Aligned_cols=251 Identities=21% Similarity=0.289 Sum_probs=134.0
Q ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHH---HCCCCCCCCCCCCE-EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 64478876328861478999999998---24100136555554-898627888857999999999986306881686469
Q gi|254780627|r 159 DSRFVFSTFIEGSSNRVALTAAQSIA---EVDSHGYTTVRLNP-LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 (502)
Q Consensus 159 NpryTFDnFVVG~sN~lA~aAAkaVA---e~pg~~~~~~~~NP-Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~ 234 (502)
....+..||+.+.--..-..-+-+|- .+||.. ....|| +.++|++|.|||-+..+++.++ +..++-+++
T Consensus 392 s~~~~l~n~~~~~~~~~~~~~l~~vl~p~~~~s~~--~~~~~~~vLLhG~~g~GK~t~V~~vas~l-----g~h~~evdc 464 (953)
T KOG0736 392 SSLSTLWNSLSPPGLEAKVLELVAVLSPQKQPSGA--LLTLNPSVLLHGPPGSGKTTVVRAVASEL-----GLHLLEVDC 464 (953)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHH--CCCCCEEEEEECCCCCCHHHHHHHHHHHH-----CCCEEECCH
T ss_conf 26678751588766027999999984865585300--13355379986799987579999999983-----872570138
Q ss_pred HHHHHHHHHHHHCCCHHHHH-HH--------HHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH------CCCEEEEECC
Q ss_conf 88899999998619889999-99--------740310205444453175069999999999885------6987999648
Q gi|254780627|r 235 EYFMWRFASAIRDNCALNLK-DS--------LRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLD------SAKQVVAAAD 299 (502)
Q Consensus 235 e~F~~~~~~a~~~~~~~~fr-~~--------~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~------~gkqiv~tsd 299 (502)
.+|+.+-.+..-.+-..-|- .+ +|+.|+|.||--+ |- --.+...|+.+.. .++++++.+.
T Consensus 465 ~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg---ge--d~rl~~~i~~~ls~e~~~~~~~~~ivv~t 539 (953)
T KOG0736 465 YELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GE--DARLLKVIRHLLSNEDFKFSCPPVIVVAT 539 (953)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCC---CH--HHHHHHHHHHHHHCCCCCCCCCCEEEEEE
T ss_conf 98864363313789999999875268628987224245533777---44--27799999999720235677996599996
Q ss_pred CCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH-HHHHHHHHCCC-CHHHHHHHHHH
Q ss_conf 75676136303457653021157751588899999999999886431168978989-99999850278-88999999999
Q gi|254780627|r 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE-VLMHVARTVTT-SGRELDGAFNQ 377 (502)
Q Consensus 300 ~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~-v~~~la~~~~~-~vR~Legal~~ 377 (502)
.. .+.++..-..|-|.- ...+..|+.|-|+.|||-.+. ...+.++ -+.-+|....+ ++++|+..+..
T Consensus 540 ~~--s~~~lp~~i~~~f~~--ei~~~~lse~qRl~iLq~y~~-------~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~ 608 (953)
T KOG0736 540 TS--SIEDLPADIQSLFLH--EIEVPALSEEQRLEILQWYLN-------HLPLNQDVNLKQLARKTSGFSFGDLEALVAH 608 (953)
T ss_pred CC--CCCCCCHHHHHHHHH--HCCCCCCCHHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 25--302398789875265--213778887889999999983-------0652357787899986589877779977147
Q ss_pred H--------HHHHHH---------------CCCCCHHHHHHHHH-------HHHCCCCCCCCC------HHHHHHHHHHH
Q ss_conf 9--------998630---------------24687788999998-------763037887579------89999999998
Q gi|254780627|r 378 L--------VFRHSF---------------APILTAEIADELLS-------HLVNTGETKKMR------IEDIQRMVAKH 421 (502)
Q Consensus 378 l--------~~~~~~---------------~~~~~~~~~~~~l~-------~~~~~~~~~~i~------~~~I~~~V~~~ 421 (502)
. ... .+ +..++.+.....+. +-+...+..+++ ++..+..+-+.
T Consensus 609 ~s~~~~~~i~~~-~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldT 687 (953)
T KOG0736 609 SSLAAKTRIKNK-GLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDT 687 (953)
T ss_pred CHHHHHHHHHHH-CCCCCCHHCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHHHHHHHHH
T ss_conf 518889999752-0144311102454012464101988888988988865553079888964600155789999999987
Q ss_pred HCC--CHHHHHCCC
Q ss_conf 099--999940888
Q gi|254780627|r 422 YNI--SRNDLLSNR 433 (502)
Q Consensus 422 ~~i--~~~~l~s~~ 433 (502)
-++ .+-+|.|+.
T Consensus 688 IqlPL~hpeLfssg 701 (953)
T KOG0736 688 IQLPLKHPELFSSG 701 (953)
T ss_pred HCCCCCCHHHHHCC
T ss_conf 54754375665125
No 150
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0019 Score=44.58 Aligned_cols=195 Identities=18% Similarity=0.227 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH----HHHHHHHHHCCCH
Q ss_conf 899999999824100136555554898627888857999999999986306881686469888----9999999861988
Q gi|254780627|r 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF----MWRFASAIRDNCA 250 (502)
Q Consensus 175 lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F----~~~~~~a~~~~~~ 250 (502)
+-|-|-+........ --|-+.||+|+|||-|-++|+..+-+.+-...+==+.-|.= -+.|+-|+-.+=+
T Consensus 336 lEyLAV~~l~~~~kG-------pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGaMPGrIi 408 (782)
T COG0466 336 LEYLAVQKLTKKLKG-------PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKII 408 (782)
T ss_pred HHHHHHHHHHCCCCC-------CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHH
T ss_conf 999999986146788-------5799978998870118999999958977999547654277753553123356872899
Q ss_pred HHHHHHHHHCCHHHHHHHHHHC----CC-C-HHHH-H----HHHHHHH-----HHCCCEEEEECCCCHHHHCCCCHHHHH
Q ss_conf 9999997403102054444531----75-0-6999-9----9999998-----856987999648756761363034576
Q gi|254780627|r 251 LNLKDSLRNIDLLLIDDMQFLQ----GK-L-IQHE-F----CHLLNSL-----LDSAKQVVAAADRPPSELESLDPRIRS 314 (502)
Q Consensus 251 ~~fr~~~r~~DvLliDDiqfl~----gk-~-tqee-~----f~~~n~l-----~~~gkqiv~tsd~~P~~l~~l~~rL~S 314 (502)
+..++-=..-.|.|+|-|.-++ |. + +.-| | -++|..- ++-.+-+-+|.- +.+.+++.-|..
T Consensus 409 Q~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTA---Nsl~tIP~PLlD 485 (782)
T COG0466 409 QGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATA---NSLDTIPAPLLD 485 (782)
T ss_pred HHHHHHCCCCCEEEEECHHHCCCCCCCCHHHHHHHHCCHHHCCCHHHCCCCCCCCHHHEEEEEEC---CCCCCCCHHHHC
T ss_conf 99998677687478640333167777886888886269765676122201676644325888603---751329867843
Q ss_pred HHHCCEEEEECCCCHHHHHHHHHHHHHHHHH-----HCCCCCCCHHHHHHHHHHCC--CCHHHHHHHHHHHHHHH
Q ss_conf 5302115775158889999999999988643-----11689789899999985027--88899999999999986
Q gi|254780627|r 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQK-----EDPKLNINEEVLMHVARTVT--TSGRELDGAFNQLVFRH 382 (502)
Q Consensus 315 R~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~-----~~~~~~l~~~v~~~la~~~~--~~vR~Legal~~l~~~~ 382 (502)
|++ +.+|.-=..+.++.|.++-+--... ....+.++++++.+|.+..+ ..||.||--+.++...+
T Consensus 486 RME---iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~ 557 (782)
T COG0466 486 RME---VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKA 557 (782)
T ss_pred CEE---EEEECCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 030---564268886999999998445689997599823355658999999998767621038999999999999
No 151
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.0036 Score=42.54 Aligned_cols=187 Identities=16% Similarity=0.124 Sum_probs=100.7
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCC---------------
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630688---------------
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL--------------- 227 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~--------------- 227 (502)
+|+.. +|-....+ +-.+... .|+.. +-+.++|+.|+|||.|-.+++..++......
T Consensus 21 ~~~~l-iGq~~~~~--~L~~a~~-~gRl~-----HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~ 91 (352)
T PRK09112 21 ENNRL-FGHEEARA--FLAQAYR-EGRLH-----HALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPL 91 (352)
T ss_pred CHHHH-CCHHHHHH--HHHHHHH-CCCCC-----CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
T ss_conf 46462-78699999--9999998-49965-----2465358998089999999999986699866686556788878778
Q ss_pred ----------CEEEEEHHHHHHHHHHHHHCC-CHHHHH---HHHH------HCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf ----------168646988899999998619-889999---9974------03102054444531750699999999998
Q gi|254780627|r 228 ----------RVVYLTAEYFMWRFASAIRDN-CALNLK---DSLR------NIDLLLIDDMQFLQGKLIQHEFCHLLNSL 287 (502)
Q Consensus 228 ----------~v~y~~~e~F~~~~~~a~~~~-~~~~fr---~~~r------~~DvLliDDiqfl~gk~tqee~f~~~n~l 287 (502)
.++++.-. .++-....+.. .+++-| +++. ..-|.+||+.+.+. ...++-|.-++.+=
T Consensus 92 ~r~i~~g~hpdl~~i~r~--~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~-~~aaNALLK~LEEP 168 (352)
T PRK09112 92 WRQIAQGAHPNLLHLTRP--FDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMN-RNAANAILKTLEEP 168 (352)
T ss_pred HHHHHCCCCCCEEEEECC--CCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHH-HHHHHHHHHHHHCC
T ss_conf 999974899995655343--220214543357779999999984548866880699981878746-99999999985348
Q ss_pred HHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 85698799964875676136303457653021157751588899999999999886431168978989999998502788
Q gi|254780627|r 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTS 367 (502)
Q Consensus 288 ~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~ 367 (502)
-.+ --+|+.|..+ . .+-+-++||+. .....|.+.+.-...|+.- ....++. .++.++.|+....||
T Consensus 169 p~~-~~fiLit~~~-~---~ll~TI~SRCq---~~~f~pL~~~di~~~L~~i-----~~~~~~~-~~~~~~~l~~~a~GS 234 (352)
T PRK09112 169 PAR-ALFILISHSS-G---RLLPTIRSRCQ---PISLKPLDDDELKKALSHL-----GSKQGIS-AGEETEALLQRSEGS 234 (352)
T ss_pred CCC-EEEEEEECCH-H---HCHHHHHHHCC---CCCCCCCCHHHHHHHHHHH-----HHCCCCC-CHHHHHHHHHHHCCC
T ss_conf 987-4899886997-7---77689997433---2148893989999999987-----5126899-879999999870899
Q ss_pred HHHHHHHH
Q ss_conf 89999999
Q gi|254780627|r 368 GRELDGAF 375 (502)
Q Consensus 368 vR~Legal 375 (502)
+|.-...+
T Consensus 235 ~~~Al~L~ 242 (352)
T PRK09112 235 VRKALLLL 242 (352)
T ss_pred HHHHHHHH
T ss_conf 88999874
No 152
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.37 E-value=0.011 Score=39.14 Aligned_cols=199 Identities=19% Similarity=0.194 Sum_probs=120.8
Q ss_pred CCCCCHHHH--HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH
Q ss_conf 288614789--999999982410013655555489862788885799999999998630688168646988899999998
Q gi|254780627|r 168 IEGSSNRVA--LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 (502)
Q Consensus 168 VVG~sN~lA--~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~ 245 (502)
++|.|=.|- +..+..||... -|.+|.|.||.||--+-+|| |+.-.+. +.-.+.+++-....+.+.+-
T Consensus 143 liG~S~am~~l~~~i~kvA~s~---------a~VLI~GESGtGKElvAr~I-H~~S~R~-~~PFVavNcaAip~~l~ESE 211 (464)
T COG2204 143 LVGESPAMQQLRRLIAKVAPSD---------ASVLITGESGTGKELVARAI-HQASPRA-KGPFIAVNCAAIPENLLESE 211 (464)
T ss_pred CCCCCHHHHHHHHHHHHHHCCC---------CCEEEECCCCCCHHHHHHHH-HHHCCCC-CCCCEEEECCCCCHHHHHHH
T ss_conf 5206999999999999984779---------97899778987589999999-8607445-89925633464898887777
Q ss_pred HCC--------CHHHHHHHH--HHCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHHC--------CCEEEEECCCCHHHH
Q ss_conf 619--------889999997--40310205444453175069999999999--8856--------987999648756761
Q gi|254780627|r 246 RDN--------CALNLKDSL--RNIDLLLIDDMQFLQGKLIQHEFCHLLNS--LLDS--------AKQVVAAADRPPSEL 305 (502)
Q Consensus 246 ~~~--------~~~~fr~~~--r~~DvLliDDiqfl~gk~tqee~f~~~n~--l~~~--------gkqiv~tsd~~P~~l 305 (502)
--| ....=.-+| -+=-.|.+|.|--+. -..|.-|+-.+.. +..- +-.||-++++...+.
T Consensus 212 LFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mp-l~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~ 290 (464)
T COG2204 212 LFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMP-LELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEE 290 (464)
T ss_pred HHCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCC-HHHHHHHHHHHHCCEEEECCCCCEECEEEEEEEECCCCHHHH
T ss_conf 6145656767764345761577379658732311099-999999999987070673588860000169996057789999
Q ss_pred C---CCCHHHHHHHHCCEEEEECCCCHHHHHH--------HHHHHHHHHHHHCCCCCCCHHHHHHH-HHHCCCCHHHHHH
Q ss_conf 3---6303457653021157751588899999--------99999988643116897898999999-8502788899999
Q gi|254780627|r 306 E---SLDPRIRSRLQGGVSVPLGLHDYEMRFS--------ILKNRLAISQKEDPKLNINEEVLMHV-ARTVTTSGRELDG 373 (502)
Q Consensus 306 ~---~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~--------Il~~k~~~~~~~~~~~~l~~~v~~~l-a~~~~~~vR~Leg 373 (502)
- .|-+-|.-||. |+.|.-|-+-.|.. ++++-+.... .+-..++++.+..| +-...||||||+-
T Consensus 291 v~~G~FReDLyyRLn---V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~--~~~~~~s~~a~~~L~~y~WPGNVREL~N 365 (464)
T COG2204 291 VAAGRFREDLYYRLN---VVPLRLPPLRERKEDIPLLAEHFLKRFAAELG--RPPKGFSPEALAALLAYDWPGNVRELEN 365 (464)
T ss_pred HHCCCCHHHHHHHHC---CCEECCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHCCCCHHHHHHHH
T ss_conf 881973788886523---31104876223620079999999999999809--9988879999999973899818999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999863
Q gi|254780627|r 374 AFNQLVFRHS 383 (502)
Q Consensus 374 al~~l~~~~~ 383 (502)
++-+....+.
T Consensus 366 ~ver~~il~~ 375 (464)
T COG2204 366 VVERAVILSE 375 (464)
T ss_pred HHHHHHHCCC
T ss_conf 9999985178
No 153
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0025 Score=43.68 Aligned_cols=130 Identities=21% Similarity=0.312 Sum_probs=84.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCH-HHHHHHHHHCC-HHHHHHHHHHCCCC-
Q ss_conf 8986278888579999999999863068816864698889999999861988-99999974031-02054444531750-
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA-LNLKDSLRNID-LLLIDDMQFLQGKL- 275 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~-~~fr~~~r~~D-vLliDDiqfl~gk~- 275 (502)
..++||+|.|||-|-.|++.+. .-| .+++|.-+|+.-||-- -...+ +-|.+--+++. +.-||-|.-+..++
T Consensus 186 vlLvGpPGTGKTLLAkAvAgEA--~VP---Ff~iSGS~FVemfVGv-GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg 259 (596)
T COG0465 186 VLLVGPPGTGKTLLAKAVAGEA--GVP---FFSISGSDFVEMFVGV-GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRG 259 (596)
T ss_pred EEEECCCCCCCHHHHHHHHCCC--CCC---CEECCCHHHHHHHCCC-CCHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC
T ss_conf 2685599987278999984546--898---3530344464431478-838889999985515996698763433145457
Q ss_pred ------------HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHH--HHHHCCEEEEECCCCHHHHHHHHHHH
Q ss_conf ------------69999999999885698799964875676136303457--65302115775158889999999999
Q gi|254780627|r 276 ------------IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR--SRLQGGVSVPLGLHDYEMRFSILKNR 339 (502)
Q Consensus 276 ------------tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~--SR~~~Gl~~~i~~Pd~e~r~~Il~~k 339 (502)
|...++--.|-+-.+...||+++-.-|.-| ++-|. .||-. .+-|+.||..-|..||+.-
T Consensus 260 ~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVl---D~ALlRpgRFDR--qI~V~~PDi~gRe~IlkvH 332 (596)
T COG0465 260 AGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVL---DPALLRPGRFDR--QILVELPDIKGREQILKVH 332 (596)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCC---HHHHCCCCCCCE--EEECCCCCHHHHHHHHHHH
T ss_conf 788998069999998888520157888754885267874333---176528877662--5544785156578887886
No 154
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=97.35 E-value=0.019 Score=37.47 Aligned_cols=138 Identities=23% Similarity=0.348 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHCCC-----------CHHHHHHHHHHHHHHC-------CCEEEEECCC-----CHHHHCCCCHHHHHHHH
Q ss_conf 10205444453175-----------0699999999998856-------9879996487-----56761363034576530
Q gi|254780627|r 261 DLLLIDDMQFLQGK-----------LIQHEFCHLLNSLLDS-------AKQVVAAADR-----PPSELESLDPRIRSRLQ 317 (502)
Q Consensus 261 DvLliDDiqfl~gk-----------~tqee~f~~~n~l~~~-------gkqiv~tsd~-----~P~~l~~l~~rL~SR~~ 317 (502)
-+.-||-|.-++.+ ..|..|+-++.--.=+ -..|+|-|-. .|++| =+.|..||-
T Consensus 250 GIVFIDEIDKIa~~~~~~g~DVS~EGVQrdLLpivEGt~V~tK~G~V~TdhILFIasGAFh~sKPSDL---IPEl~GRlP 326 (442)
T PRK05201 250 GIVFIDEIDKIAKRGEGSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVAKPSDL---IPELQGRFP 326 (442)
T ss_pred CCEEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHH---HHHHCCCCE
T ss_conf 70451146565303578898977330788878875388555677760255034550450014782022---498717550
Q ss_pred CCEEEEECCCCHHHHHHHH--------HHHHHHHHHHCCCCCCCHHHHHHHHHHCCC--------CHHHHHHHHHHHHHH
Q ss_conf 2115775158889999999--------999988643116897898999999850278--------889999999999998
Q gi|254780627|r 318 GGVSVPLGLHDYEMRFSIL--------KNRLAISQKEDPKLNINEEVLMHVARTVTT--------SGRELDGAFNQLVFR 381 (502)
Q Consensus 318 ~Gl~~~i~~Pd~e~r~~Il--------~~k~~~~~~~~~~~~l~~~v~~~la~~~~~--------~vR~Legal~~l~~~ 381 (502)
+.|.+++-+.+.-..|| ++.-+....+.-.+.+++++++.||+.... .-|.|-+.+-++.--
T Consensus 327 --v~v~L~~L~~~dl~~ILtepknsL~kQy~~Lf~~egv~L~Ft~~Al~~IA~~A~~~n~~~~~iGAR~L~tI~E~vl~d 404 (442)
T PRK05201 327 --IRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLED 404 (442)
T ss_pred --EEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf --588824499999999967861578999999986249679984799999999999851447667737889999999898
Q ss_pred HHHC------C--CCCHHHHHHHHHHHHCC
Q ss_conf 6302------4--68778899999876303
Q gi|254780627|r 382 HSFA------P--ILTAEIADELLSHLVNT 403 (502)
Q Consensus 382 ~~~~------~--~~~~~~~~~~l~~~~~~ 403 (502)
.+|. . .||.+++++-|++++..
T Consensus 405 ~~Fe~p~~~~~~v~I~~~~V~~~l~~i~~~ 434 (442)
T PRK05201 405 ISFEAPDRSGEKITIDAAYVDEKLGDLVKD 434 (442)
T ss_pred HCCCCCCCCCCEEEECHHHHHHHHHHHHHC
T ss_conf 614688999977998899999999887635
No 155
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.015 Score=38.14 Aligned_cols=181 Identities=16% Similarity=0.214 Sum_probs=103.6
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH---------------CCCCC
Q ss_conf 876328861478999999998241001365555548986278888579999999999863---------------06881
Q gi|254780627|r 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR---------------QPNLR 228 (502)
Q Consensus 164 FDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~---------------~~~~~ 228 (502)
|++ |+|-.....+- ++..++ ++.. +-+.++|+.|+||+-+..+.+..+... ||+.
T Consensus 3 F~~-iiGq~~~~~~L--~~ai~~-~rl~-----hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~~~ri~~~nHPDl- 72 (314)
T PRK07399 3 FAN-LIGQPLAIELL--TAAIEQ-NRIA-----PAYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNIRRRLEEGNHPDL- 72 (314)
T ss_pred CCC-CCCCHHHHHHH--HHHHHC-CCCC-----CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCE-
T ss_conf 331-25949999999--999985-9967-----4487789998329999999999985789999766558751899977-
Q ss_pred EEEEE-----------HHHHHHHHHHHHHCC-----CHHHHH---HHHH------HCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 68646-----------988899999998619-----889999---9974------0310205444453175069999999
Q gi|254780627|r 229 VVYLT-----------AEYFMWRFASAIRDN-----CALNLK---DSLR------NIDLLLIDDMQFLQGKLIQHEFCHL 283 (502)
Q Consensus 229 v~y~~-----------~e~F~~~~~~a~~~~-----~~~~fr---~~~r------~~DvLliDDiqfl~gk~tqee~f~~ 283 (502)
.++. ..+.... .+..+ .+++.| +++. ..-|.+|||.+.+ +..+++-|+-|
T Consensus 73 -~~i~P~~~~~g~~~~~~~~~~~---~~~~~~~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m-~~~AaNaLLKt 147 (314)
T PRK07399 73 -LWVEPTYQHQGKLITASEAEEA---GLKRKSPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-NEAAANALLKT 147 (314)
T ss_pred -EEEECCCCCCCCCCCHHHHHHH---HHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHC-CHHHHHHHHHH
T ss_conf -8860562003454557789876---530268777879999999999731885688479998897871-99999999986
Q ss_pred HHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99988569879996487567613630345765302115775158889999999999988643116897898999999850
Q gi|254780627|r 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 (502)
Q Consensus 284 ~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~ 363 (502)
+.+ =.++ .+|+.+.. |. .+-+-++||+. .++..+.+.+.-..+|++. .......+..+.+-.+|.
T Consensus 148 LEE-P~~~-~fILit~~-~~---~lLpTI~SRCQ---~i~F~~l~~~~i~~~L~~~-----~~~~~~~~~~~~l~~~A~- 212 (314)
T PRK07399 148 LEE-PGNG-TLILIAPS-PE---SLLPTIVSRCQ---IIPFYRLSDEQLEQVLKRL-----GDNINEILDHPELLALAQ- 212 (314)
T ss_pred HCC-CCCC-EEEEEECC-HH---HCCHHHHCCCE---EEECCCCCHHHHHHHHHHC-----CCCCCCCCCHHHHHHHHC-
T ss_conf 147-8785-69999799-36---49146641875---6338998999999999971-----664331027899998817-
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 2788899999999
Q gi|254780627|r 364 VTTSGRELDGAFN 376 (502)
Q Consensus 364 ~~~~vR~Legal~ 376 (502)
||...+-.+..
T Consensus 213 --GspG~a~~~~~ 223 (314)
T PRK07399 213 --GSPGAAIANIE 223 (314)
T ss_pred --CCHHHHHHHHH
T ss_conf --99799999999
No 156
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=97.32 E-value=0.0024 Score=43.78 Aligned_cols=204 Identities=17% Similarity=0.261 Sum_probs=120.6
Q ss_pred HHHCCCCCHHHH-HHHHHHHH----HCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH-H
Q ss_conf 763288614789-99999998----24100136555554898627888857999999999986306881686469888-9
Q gi|254780627|r 165 STFIEGSSNRVA-LTAAQSIA----EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF-M 238 (502)
Q Consensus 165 DnFVVG~sN~lA-~aAAkaVA----e~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F-~ 238 (502)
-.-|=|--+... .+.|-.-+ .+|.++-. -+..+||+|+|||=|....|-.+ =+.=++| |
T Consensus 496 ~~kIfGQD~AI~~lv~aiK~SrAGl~~~nkP~G-----SFLF~GPTGVGKTElak~LA~~L----------Gv~l~RFDM 560 (774)
T TIGR02639 496 KAKIFGQDEAIEQLVSAIKRSRAGLGEPNKPVG-----SFLFVGPTGVGKTELAKQLAEEL----------GVHLLRFDM 560 (774)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEE-----EEEEECCCCCCHHHHHHHHHHHH----------CCHHCCCCC
T ss_conf 013151589999999999998742477888168-----88864798962578899999970----------820010465
Q ss_pred HHHHHHH------H---------CC-CHHHHHHHHHH-CCHHHHHHHHHHCCCCHHHHHHHHHHH--HHHCCCE------
Q ss_conf 9999998------6---------19-88999999740-310205444453175069999999999--8856987------
Q gi|254780627|r 239 WRFASAI------R---------DN-CALNLKDSLRN-IDLLLIDDMQFLQGKLIQHEFCHLLNS--LLDSAKQ------ 293 (502)
Q Consensus 239 ~~~~~a~------~---------~~-~~~~fr~~~r~-~DvLliDDiqfl~gk~tqee~f~~~n~--l~~~gkq------ 293 (502)
+||..-. - .| =..+-- .++ .=|||+|=|.= |-.-.-+-|++++|+ |.||+++
T Consensus 561 SEYmEKHTVsRLIGsPPGYVGfEqGGLLT~Av--rK~P~cVLLLDEIEK-AHpDI~NILLQVMD~AtLTDN~GrKaDFRN 637 (774)
T TIGR02639 561 SEYMEKHTVSRLIGSPPGYVGFEQGGLLTDAV--RKHPHCVLLLDEIEK-AHPDIYNILLQVMDYATLTDNNGRKADFRN 637 (774)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH--CCCCCEEEHHHHHHH-HHHHHHHHHHHHHCCCEEECCCCCEEEECC
T ss_conf 04468999987416888851316777212233--128853542346666-313366678766335434058885763113
Q ss_pred --EEEECCCCHHHHCC---------------------CCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHH----H
Q ss_conf --99964875676136---------------------30345765302115775158889999999999988643----1
Q gi|254780627|r 294 --VVAAADRPPSELES---------------------LDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK----E 346 (502)
Q Consensus 294 --iv~tsd~~P~~l~~---------------------l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~----~ 346 (502)
+|+||..--++... |.+..+.||-. ++.=.+-+.++-..|++|.+..-.. .
T Consensus 638 VILIMTSNaGa~E~~~~~iGF~~~~~~~~~~~Aikk~F~PEFRNRLDa--ii~F~~L~~~~~~~i~~K~l~el~~~L~eK 715 (774)
T TIGR02639 638 VILIMTSNAGAREMSKNPIGFGGERVEDKSEKAIKKLFSPEFRNRLDA--IIAFNDLSEEVAEKIVKKFLDELQKQLNEK 715 (774)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC--EEECCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 688840370010236776442555412334888973158742013346--441699889999999999999999755306
Q ss_pred CCCCCCCHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 168978989999998502788---899999999999986302468778899999
Q gi|254780627|r 347 DPKLNINEEVLMHVARTVTTS---GRELDGAFNQLVFRHSFAPILTAEIADELL 397 (502)
Q Consensus 347 ~~~~~l~~~v~~~la~~~~~~---vR~Legal~~l~~~~~~~~~~~~~~~~~~l 397 (502)
+-.+.|++++..|||+.--+. .|. |.||+ ...|...+++|+|
T Consensus 716 ~v~l~l~~~a~~~LA~KGY~~efGARp----l~R~I-----~~~i~~~L~dEIL 760 (774)
T TIGR02639 716 NVELELTDDAIKYLAEKGYDEEFGARP----LARVI-----QEEIKKPLSDEIL 760 (774)
T ss_pred CEEEEECHHHHHHHHHHCCCCCCCCCH----HHHHH-----HHHHHHHHHHHHC
T ss_conf 537876478999998636781105544----89998-----8741257654420
No 157
>KOG0727 consensus
Probab=97.31 E-value=0.009 Score=39.71 Aligned_cols=162 Identities=22% Similarity=0.370 Sum_probs=92.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHH-----HCCHHHHHHHHHHCC
Q ss_conf 898627888857999999999986306881686469888999999986198899999974-----031020544445317
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-----NIDLLLIDDMQFLQG 273 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r-----~~DvLliDDiqfl~g 273 (502)
.++|||+|.|||-|..|++|+.... .+-+...+|+..|. .++ ..-.|+-|| .-.+..||.|.-++.
T Consensus 192 vllygppg~gktml~kava~~t~a~-----firvvgsefvqkyl---geg-prmvrdvfrlakenapsiifideidaiat 262 (408)
T KOG0727 192 VLLYGPPGTGKTMLAKAVANHTTAA-----FIRVVGSEFVQKYL---GEG-PRMVRDVFRLAKENAPSIIFIDEIDAIAT 262 (408)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCHH-----EEEECCHHHHHHHH---CCC-CHHHHHHHHHHHCCCCCEEEEEHHHHHHH
T ss_conf 2775799975789999986126111-----44630189999985---548-38999999987616983798622456766
Q ss_pred C----------CHHHHHHHHHHHHH----HCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEEC--CCCHHHHHHHHH
Q ss_conf 5----------06999999999988----5698799964875676136303457653021157751--588899999999
Q gi|254780627|r 274 K----------LIQHEFCHLLNSLL----DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG--LHDYEMRFSILK 337 (502)
Q Consensus 274 k----------~tqee~f~~~n~l~----~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~--~Pd~e~r~~Il~ 337 (502)
| ..|.-|..++|.+- ..+-.+|++..|+ +.|++-|.-- +-|--.|+ -||.--+.-+..
T Consensus 263 krfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnra----dtldpallrp--grldrkiefplpdrrqkrlvf~ 336 (408)
T KOG0727 263 KRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRA----DTLDPALLRP--GRLDRKIEFPLPDRRQKRLVFS 336 (408)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC----CCCCHHHCCC--CCCCCCCCCCCCCHHHHHHHHH
T ss_conf 412444463189999999999751476766655899832755----5668766287--6434443577985466522277
Q ss_pred HHHHHHHHHCCCCCCCHH--HHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 999886431168978989--999998502788899999999999986
Q gi|254780627|r 338 NRLAISQKEDPKLNINEE--VLMHVARTVTTSGRELDGAFNQLVFRH 382 (502)
Q Consensus 338 ~k~~~~~~~~~~~~l~~~--v~~~la~~~~~~vR~Legal~~l~~~~ 382 (502)
.- .. .+.++++ .-+|++..-.-+--++..++..-...+
T Consensus 337 ti-----ts--km~ls~~vdle~~v~rpdkis~adi~aicqeagm~a 376 (408)
T KOG0727 337 TI-----TS--KMNLSDEVDLEDLVARPDKISGADINAICQEAGMLA 376 (408)
T ss_pred HH-----HH--CCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 54-----31--026785448898741854343466999999976899
No 158
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.0056 Score=41.19 Aligned_cols=179 Identities=15% Similarity=0.123 Sum_probs=96.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEE--------EEEHHHHHH
Q ss_conf 288614789999999982410013655555489862788885799999999998630688168--------646988899
Q gi|254780627|r 168 IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV--------YLTAEYFMW 239 (502)
Q Consensus 168 VVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~--------y~~~e~F~~ 239 (502)
|+|-....+.- ..++.. |+.. .-..++|+.|+|||.|-.+++..++...+..... .+..+..+.
T Consensus 19 liGqe~~~~~L-~~a~~~--grl~-----HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~~p~~ 90 (363)
T PRK07471 19 LFGHAAAEAAL-LDAYRS--GRLH-----HAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPDHPVA 90 (363)
T ss_pred CCCHHHHHHHH-HHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHH
T ss_conf 16819999999-999985--9976-----458767999818899999999998579997777767870531258777289
Q ss_pred HHHHHHHCC--------------------CHHHHH---HHHH------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 999998619--------------------889999---9974------03102054444531750699999999998856
Q gi|254780627|r 240 RFASAIRDN--------------------CALNLK---DSLR------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDS 290 (502)
Q Consensus 240 ~~~~a~~~~--------------------~~~~fr---~~~r------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~ 290 (502)
..+.+-... .+++-| +++. ..-|.|||+.+.+. ..+++-|+-|+.+== .
T Consensus 91 r~i~~~~hpdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn-~~aaNALLK~LEEPP-~ 168 (363)
T PRK07471 91 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMN-ANAANALLKVLEEPP-A 168 (363)
T ss_pred HHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHC-HHHHHHHHHHHCCCC-C
T ss_conf 99952699984667620011333212445399999999997248524896699986878738-899999999721589-8
Q ss_pred CCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHH
Q ss_conf 98799964875676136303457653021157751588899999999999886431168978989999998502788899
Q gi|254780627|r 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 (502)
Q Consensus 291 gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~ 370 (502)
+--+|++|..+- .|-+-++||+. .+...|.+.+.-.+.|.. ..+...+++.+.++|.-..||++.
T Consensus 169 ~t~fiLit~~~~----~llpTI~SRCq---~~~~~~l~~~~~~~~L~~--------~~~~~~~~~~~~~la~~a~Gs~~~ 233 (363)
T PRK07471 169 RSLLLLVSHAPA----RLLPTIRSRCR---KLRLRPLAPEDVIAALAE--------AGGPALDDAELAALAALAEGSVGR 233 (363)
T ss_pred CEEEEEEECCHH----HCHHHHHHHCC---CCCCCCCCHHHHHHHHHH--------HCCCCCCHHHHHHHHHHCCCCHHH
T ss_conf 838998639977----77799997352---425899599999999998--------438999989999999975899999
Q ss_pred H
Q ss_conf 9
Q gi|254780627|r 371 L 371 (502)
Q Consensus 371 L 371 (502)
-
T Consensus 234 A 234 (363)
T PRK07471 234 A 234 (363)
T ss_pred H
T ss_conf 9
No 159
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=97.28 E-value=0.022 Score=36.99 Aligned_cols=208 Identities=10% Similarity=0.104 Sum_probs=126.5
Q ss_pred HHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCCEEEEEHHHHHH---HHHHHHHCCCHHHHHHH
Q ss_conf 9998241001365555548986278888579999999999863-0688168646988899---99999861988999999
Q gi|254780627|r 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR-QPNLRVVYLTAEYFMW---RFASAIRDNCALNLKDS 256 (502)
Q Consensus 181 kaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~-~~~~~v~y~~~e~F~~---~~~~a~~~~~~~~fr~~ 256 (502)
.....+|.. .++-.++||+--.-+....+.+...+... ...-++..++.++... .+.+.+.+..+ |-
T Consensus 10 ~~f~~~p~~-----~~~~~LlyG~d~glv~e~~~~l~~~~~~~~~~~f~~~~l~~~el~~d~~~l~de~~t~sl--F~-- 80 (343)
T PRK06585 10 DRFLARPDG-----KIRAVLLYGPDRGLVRERARRLAKSVVDDPDDPFAVVRLDGDELDADPARLEDEANTISL--FG-- 80 (343)
T ss_pred HHHHHCCCC-----CCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHCCHHHHHHHHHCCCC--CC--
T ss_conf 999819864-----765899963876479999999999725566787415774799883399999999847687--68--
Q ss_pred HHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHH---HCCEEEEECCCCHHHHH
Q ss_conf 740310205444453175069999999999885698799964875676136303457653---02115775158889999
Q gi|254780627|r 257 LRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL---QGGVSVPLGLHDYEMRF 333 (502)
Q Consensus 257 ~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~---~~Gl~~~i~~Pd~e~r~ 333 (502)
+--+++|++. +++..+.+-..++. ...+..+|+.++.-.+ ...|+.=| ..+.+++.-+++..+..
T Consensus 81 --~~rlI~i~~~----~d~~~~~l~~~l~~-~~~~~~lIi~a~~L~k-----~skLrk~~e~~~~~~~i~cY~d~~~~l~ 148 (343)
T PRK06585 81 --GRRLIWVRAG----GKSLAAALKALLAE-PPGDAFIVIEAGDLKK-----GSSLRKLFETAASAAAIPCYADDERDLA 148 (343)
T ss_pred --CCEEEEEECC----CHHHHHHHHHHHHC-CCCCEEEEEECCCCCC-----CCHHHHHHHHCCCEEEEEECCCCHHHHH
T ss_conf --9848997268----72569999999817-8998289997389773-----1189999986478699950069988999
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 99999998864311689789899999985027888999999999999863024687788999998763037887579899
Q gi|254780627|r 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIED 413 (502)
Q Consensus 334 ~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~ 413 (502)
.+++..+ ...|+.++.+++.+|+..+.+|-..+.+-+.+|..|+.-.+.+|.+.+.+++.+ ....+++.
T Consensus 149 ~~i~~~l-----~~~g~~i~~~a~~~L~~~~g~d~~~~~~EleKL~ly~~~~~~It~edv~~~v~~------~~~~~~~~ 217 (343)
T PRK06585 149 RLIDDEL-----AKAGLRITPDARAYLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGD------ASALSLDD 217 (343)
T ss_pred HHHHHHH-----HHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC------CCCCCHHH
T ss_conf 9999999-----982999779999999987342799999999999998489997899999998686------41024999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780627|r 414 IQRMVAK 420 (502)
Q Consensus 414 I~~~V~~ 420 (502)
+.+++..
T Consensus 218 l~da~l~ 224 (343)
T PRK06585 218 AADAALA 224 (343)
T ss_pred HHHHHHC
T ss_conf 9999980
No 160
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=97.27 E-value=0.00035 Score=49.71 Aligned_cols=58 Identities=24% Similarity=0.368 Sum_probs=44.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHH--CCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 8986278888579999999999863--06881686469888999999986198899999974031020544445
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKR--QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~--~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqf 270 (502)
++|||++|.|||+|.+.++..+.+. .+...-+|. .+...+|..-|+.-.+.++||+--
T Consensus 1 i~l~G~~G~GKS~~a~~la~~~~~~~~~~~~~~~Y~--------------~~~~~~~wdgY~gq~vvi~DD~~~ 60 (105)
T pfam00910 1 IWLYGPPGCGKSTLAKYLARALLDHLGLPKKDSVYS--------------RNPDDDFWDGYTGQPVVIIDDFGQ 60 (105)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEE--------------CCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 989799989889999999999999837787897796--------------788776567889985799965777
No 161
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=97.25 E-value=0.0063 Score=40.84 Aligned_cols=114 Identities=17% Similarity=0.198 Sum_probs=65.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE-----------------EEHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 54898627888857999999999986306881686-----------------4698889999999861988999999740
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY-----------------LTAEYFMWRFASAIRDNCALNLKDSLRN 259 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y-----------------~~~e~F~~~~~~a~~~~~~~~fr~~~r~ 259 (502)
=|+.|.||||.|||-|++++....-... ...|-| +|-++|. ..+.++..-+..+..
T Consensus 2 klivl~GPSG~GK~tl~~~L~~~~~~~~-~~~vs~TTR~~R~~E~~G~dY~Fvs~~~F~----~~i~~~~FlE~~~~~-- 74 (182)
T pfam00625 2 RPIVLSGPSGVGKSHIKKALLDEYPEKF-GYSVSHTTRPPRPGEVDGKDYHFVSKEEME----NDISANEFLEHAEFN-- 74 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCE-EEEEEEECCCCCCCCCCCCEEEEECHHHHH----HHHHHHHHHHHHHHC--
T ss_conf 8699989899999999999998486673-445765547999878789657996589999----987543777626407--
Q ss_pred CCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHH
Q ss_conf 310205444453175-0699999999998856987999648756761363034576530211577515888999999999
Q gi|254780627|r 260 IDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 (502)
Q Consensus 260 ~DvLliDDiqfl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~ 338 (502)
... .|. ...++...++|+-+|+-.| |+-+. .|....-..+++=|.||+.+.-..-|++
T Consensus 75 ------------g~~YGt~---~~~I~~~~~~g~~vvl~id--~~g~~----~lk~~~~~~~~IfI~pps~~~L~~RL~~ 133 (182)
T pfam00625 75 ------------GNYYGTS---KEAIEQIAESGKICILDVD--IQGVK----QLRKAELSPISVFIKPPSLKVLQRRLKG 133 (182)
T ss_pred ------------CCCEEEC---HHHHHHHHHCCCEEEEEEC--HHHHH----HHHHHCCCCEEEEEECCCHHHHHHHHHH
T ss_conf ------------9725640---2777999867996999972--89999----9987495748999938799999999981
No 162
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=97.22 E-value=0.0013 Score=45.77 Aligned_cols=183 Identities=22% Similarity=0.368 Sum_probs=108.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCC--H-HHHH-HHHHHCCHHHHHHHHHHCCC
Q ss_conf 898627888857999999999986306881686469888999999986198--8-9999-99740310205444453175
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC--A-LNLK-DSLRNIDLLLIDDMQFLQGK 274 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~--~-~~fr-~~~r~~DvLliDDiqfl~gk 274 (502)
.++|||+|.|||=|-.|++++.... .+-+-+.+|++.|+ .+|. + +-|+ .|=..--++-||.|.-++.|
T Consensus 159 vLLyGPPGtGKTLlAKAvA~et~AT-----FIrvVgSElV~KyI---GEGArLV~~~F~LAkEKaPsIiFIDEiDAiaak 230 (364)
T TIGR01242 159 VLLYGPPGTGKTLLAKAVAHETNAT-----FIRVVGSELVRKYI---GEGARLVREVFELAKEKAPSIIFIDEIDAIAAK 230 (364)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCE-----EEEEEHHHHHHHHH---CCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHH
T ss_conf 5700757976889999863145512-----68860444444441---331689999999853069816861013335432
Q ss_pred ----------CHHHHHHHHHHH---HHHCCCEEEEECCCCHHHHCCCCHHHH--HHHHCCEEEEECCCCHHHHHHHHHHH
Q ss_conf ----------069999999999---885698799964875676136303457--65302115775158889999999999
Q gi|254780627|r 275 ----------LIQHEFCHLLNS---LLDSAKQVVAAADRPPSELESLDPRIR--SRLQGGVSVPLGLHDYEMRFSILKNR 339 (502)
Q Consensus 275 ----------~tqee~f~~~n~---l~~~gkqiv~tsd~~P~~l~~l~~rL~--SR~~~Gl~~~i~~Pd~e~r~~Il~~k 339 (502)
..|--+.+++-+ +-..|.-=|+++-.-|.-| |+-+. .||-. ..++--|+++=|+.||+-
T Consensus 231 R~~~~TsGdREV~RTlmQLLAElDGFd~rg~VkviaATNR~Dil---DPA~LRPGRFDR--~IEVPlP~~~GR~eIlki- 304 (364)
T TIGR01242 231 RVDSSTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDIL---DPAILRPGRFDR--IIEVPLPDFEGRLEILKI- 304 (364)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHC---CCCCCCCCCCCC--EEECCCCCCCCHHHHHHH-
T ss_conf 11467787315788999999752488876761688720762020---432148886132--573169783220566555-
Q ss_pred HHHHHHHCCCCCCCHHH-HHHHHHHCCCC-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 98864311689789899-99998502788-89999999999998630246877889999987630378875798999999
Q gi|254780627|r 340 LAISQKEDPKLNINEEV-LMHVARTVTTS-GRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 (502)
Q Consensus 340 ~~~~~~~~~~~~l~~~v-~~~la~~~~~~-vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~I~~~ 417 (502)
+-+++.|.+|| ++.||+-..|. --+|...+..-.. .-++. ....+|.++..++
T Consensus 305 ------HTr~~~la~dVdl~~~A~~TeG~sGAdlKAi~tEAG~------------------~AIR~-~r~~vT~~Df~kA 359 (364)
T TIGR01242 305 ------HTRKMKLAEDVDLEAIAKLTEGASGADLKAICTEAGM------------------FAIRE-ERDYVTMDDFLKA 359 (364)
T ss_pred ------HHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHH------------------HHHHH-HHHHHHHHHHHHH
T ss_conf ------2100001235687999987478866304234346204------------------77774-4567669999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780627|r 418 VAK 420 (502)
Q Consensus 418 V~~ 420 (502)
|-+
T Consensus 360 v~K 362 (364)
T TIGR01242 360 VEK 362 (364)
T ss_pred HHH
T ss_conf 873
No 163
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=97.22 E-value=0.014 Score=38.42 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 06999999999988569879996487567613630345765302115775158889999999999988643116897898
Q gi|254780627|r 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 (502)
Q Consensus 275 ~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~ 354 (502)
...+.++..+..... ...+++...........+..-+ -.+..|.+++..+|+.+.....+++++. ..|+.++.
T Consensus 90 ~~~~~l~~~~~~~p~-~~~~l~~~~~kl~~~~~~~k~~-~~~~~~~~~~~~~~~~~~l~~~i~~~~~-----~~~l~i~~ 162 (334)
T COG1466 90 DKNLALLELAALLPS-TDLLLLVESNKLDKAKKLTKWL-KKLAKAVVVECKPLDEAELPQWIKKRAK-----ELGLKIDQ 162 (334)
T ss_pred CHHHHHHHHHCCCCC-CCEEEEEECCCCCHHHHHHHHH-HHHCCCCEEEECCCCHHHHHHHHHHHHH-----HCCCCCCH
T ss_conf 278999998536897-8689999618875277878988-8744473466258877889999999999-----91898899
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9999998502788899999999999986302468778899999876
Q gi|254780627|r 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHL 400 (502)
Q Consensus 355 ~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~ 400 (502)
+++++++..+.+|.+.+.+.+.+|..++.-+ .||.+.+++++.+.
T Consensus 163 ~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~-~I~~~~V~~~v~~~ 207 (334)
T COG1466 163 EAIQLLLEALGGNLLAIAQEIEKLALYAGDK-EITLEDVEEVVSDV 207 (334)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHCCC
T ss_conf 9999999985882999999999998747898-66799999997364
No 164
>pfam06144 DNA_pol3_delta DNA polymerase III, delta subunit. DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction. The delta subunit is also known as HolA.
Probab=97.20 E-value=0.014 Score=38.31 Aligned_cols=165 Identities=12% Similarity=0.110 Sum_probs=106.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHC-CCCCEEEEEHHHHH-HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHH
Q ss_conf 9862788885799999999998630-68816864698889-999999861988999999740310205444453175069
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQ-PNLRVVYLTAEYFM-WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQ 277 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~-~~~~v~y~~~e~F~-~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~tq 277 (502)
++||+--.=......+|-..+.... .+..+.++.+++.. .+++.+++.-.+ | -+--+++|.+.++..++...
T Consensus 2 ll~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~~~~~~~i~~~~~t~sl--F----~~~rlvii~~~~~~~~~~~~ 75 (172)
T pfam06144 2 LLYGEDPFLLEETKDQILKAALDQGFEDFNYIYFDLEEDWADDVLEECETLPF--F----SDKRIVILNNPNLKESKLNE 75 (172)
T ss_pred EEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCCCC--C----CCCEEEEEECCCCCCCCCCH
T ss_conf 79728599999999999999737997303689862776669999999728998--8----89769999776424455539
Q ss_pred H---HHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 9---9999999988569879996487567613630345765302115775158889999999999988643116897898
Q gi|254780627|r 278 H---EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 (502)
Q Consensus 278 e---e~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~ 354 (502)
. .|...+... ..+.-+|+.+...+..=..+ ...--..|.+++..+|+-..-...++.. +...|+.+++
T Consensus 76 ~~~~~l~~~l~~~-~~~~~lv~~~~~~~~~~~k~---~k~l~k~~~~i~~~~~~~~~l~~wi~~~-----~~~~g~~i~~ 146 (172)
T pfam06144 76 KLLKRLEEYLSNP-PEDTLLIIEAPGKLDERKKL---TKLLKKKATVVECFTLKEEELIQWIQKR-----AKELGLKIEK 146 (172)
T ss_pred HHHHHHHHHHHCC-CCCEEEEEEECCCHHHHHHH---HHHHHHCCEEEEECCCCHHHHHHHHHHH-----HHHCCCCCCH
T ss_conf 9999999998369-98728999836741367888---9999837669993489878999999999-----9984999899
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9999998502788899999999999
Q gi|254780627|r 355 EVLMHVARTVTTSGRELDGAFNQLV 379 (502)
Q Consensus 355 ~v~~~la~~~~~~vR~Legal~~l~ 379 (502)
+++++|++++.+|.+.+..-+.+|.
T Consensus 147 ~a~~~L~~~~g~nl~~l~~EieKL~ 171 (172)
T pfam06144 147 DALQLLAEKVENNLLAIAQELEKLA 171 (172)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHC
T ss_conf 9999999997848999999999766
No 165
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.19 E-value=0.0027 Score=43.50 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=32.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
Q ss_conf 48986278888579999999999863068816864698889
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~ 238 (502)
-.-|||++|.|||.|+.-++..+.+. +.+|+|+++|.+.
T Consensus 21 it~i~G~pG~GKStl~lq~a~~~~~~--g~~v~YidtE~~~ 59 (218)
T cd01394 21 VTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLS 59 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEECCCCC
T ss_conf 99998999984999999999998636--9869999665567
No 166
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=97.15 E-value=0.00065 Score=47.81 Aligned_cols=172 Identities=18% Similarity=0.255 Sum_probs=106.6
Q ss_pred CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHH-H-HHHH----------------HHHHHCCC
Q ss_conf 0013655555489862788885799999999998630688168646988-8-9999----------------99986198
Q gi|254780627|r 188 SHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY-F-MWRF----------------ASAIRDNC 249 (502)
Q Consensus 188 g~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~-F-~~~~----------------~~a~~~~~ 249 (502)
+..|-...| |+=+-||.|.|||-|-.++|++. . .=|+.++++. | +.++ |..+-+ .
T Consensus 14 ~l~yL~~G~-PvHl~GPaG~GKT~LA~hvA~~r--~---RPV~l~~Gd~eL~~~DLvG~~~g~~~~kv~DqfihnV~K-~ 86 (265)
T TIGR02640 14 ALRYLKSGY-PVHLRGPAGTGKTTLAMHVARKR--D---RPVVLINGDAELTTSDLVGSYAGYTRKKVVDQFIHNVVK-L 86 (265)
T ss_pred HHHHHCCCC-CEEEECCCCCCHHHHHHHHHHHC--C---CCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCEEEEEC-C
T ss_conf 766322788-66744788855689999999736--8---968998658232654423154675222232012111342-5
Q ss_pred HHHHHHHHHHCCHHHHHHHH---------HHCCC-CHHHHHHHHHHHHHH--CC-------------CEEEEECCCCHHH
Q ss_conf 89999997403102054444---------53175-069999999999885--69-------------8799964875676
Q gi|254780627|r 250 ALNLKDSLRNIDLLLIDDMQ---------FLQGK-LIQHEFCHLLNSLLD--SA-------------KQVVAAADRPPSE 304 (502)
Q Consensus 250 ~~~fr~~~r~~DvLliDDiq---------fl~gk-~tqee~f~~~n~l~~--~g-------------kqiv~tsd~~P~~ 304 (502)
-+.+++++ +|-=|.--+| |=-.| .|.+-|+.+|.+-.- -| =++||||. |.|
T Consensus 87 ~d~~~~~W--~D~rLt~Av~eG~TLVYdEF~RskP~~nNVLLSvlEE~vL~LPg~~~~~~Yv~VhP~FR~IfTSN--p~E 162 (265)
T TIGR02640 87 EDIVRQNW--VDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVLEEGVLELPGKRGESRYVDVHPEFRVIFTSN--PVE 162 (265)
T ss_pred CCCCCCCC--CCCHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEECCC--CCC
T ss_conf 12200266--78357899756972766475788620456567555523215888787787225788702463148--701
Q ss_pred HCCCC---HHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH--
Q ss_conf 13630---3457653021157751588899999999999886431168978989999998502788899999999999--
Q gi|254780627|r 305 LESLD---PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-- 379 (502)
Q Consensus 305 l~~l~---~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~-- 379 (502)
-.|.. |-|.-||- +..|.-||.+|-.+|+..| ..+.++-+..|..-+ .++|.=+|.=+...
T Consensus 163 YAGVh~~QDALlDRL~---ti~~D~~D~~~e~ai~~~~----------t~~~~~~a~~IV~lv-~~~R~a~g~e~~~Gl~ 228 (265)
T TIGR02640 163 YAGVHETQDALLDRLV---TISMDYPDEDTETAILRAK----------TDVAEESAATIVRLV-RELRLASGDEKTSGLS 228 (265)
T ss_pred CCCCCCHHHHHHHHHC---CCCCCCCCHHHHHHHHHHH----------HCCCHHHHHHHHHHH-HHHHHHCCCCCCCCHH
T ss_conf 0576771667766440---0457854447899999986----------061246789999999-9984212553337436
Q ss_pred HHHHH
Q ss_conf 98630
Q gi|254780627|r 380 FRHSF 384 (502)
Q Consensus 380 ~~~~~ 384 (502)
.+|++
T Consensus 229 ~RA~l 233 (265)
T TIGR02640 229 LRASL 233 (265)
T ss_pred HHHHH
T ss_conf 89999
No 167
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.019 Score=37.48 Aligned_cols=145 Identities=17% Similarity=0.220 Sum_probs=85.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH---------------------HCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 54898627888857999999999986---------------------306881686469888999999986198899999
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIK---------------------RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~---------------------~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~ 255 (502)
+-+.++|+.|+||+.+..+.+-.+.- .||+ +.++.+|. ..++-..+.+.++
T Consensus 29 HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~C~~~~~~~HPD--~~~i~p~~------~~i~idqiR~L~~ 100 (329)
T PRK08058 29 HAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIESGNHPD--VHLVAPDG------QSIKKDQIRYLKE 100 (329)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCC--EEEECCCC------CCCCHHHHHHHHH
T ss_conf 156557899988999999999997399999999887888999987699997--67745661------4077999999999
Q ss_pred HH--H----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCH
Q ss_conf 97--4----03102054444531750699999999998856987999648756761363034576530211577515888
Q gi|254780627|r 256 SL--R----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 (502)
Q Consensus 256 ~~--r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~ 329 (502)
++ + ..-|.+||+.+-+. ..+++-|+-|+.+=- .+--+|++++.+ . .+-+-++||.. .+.+.||..
T Consensus 101 ~~~~~p~~g~~KV~II~~Ae~m~-~~AaNALLKtLEEPp-~~t~fIL~t~~~-~---~lLpTI~SRCq---~i~f~~~~~ 171 (329)
T PRK08058 101 EFSKSGVESNKKVYIIEHADKMT-ASAANSLLKFLEEPS-GDTTAILLTENK-H---QILPTILSRCQ---VVEFRPLPP 171 (329)
T ss_pred HHCCCCCCCCCEEEEEECHHHHC-HHHHHHHHHHHHCCC-CCCEEEEEECCH-H---HHHHHHHHCCE---EEECCCCCH
T ss_conf 96438757886799973477629-999999999864689-786799872996-6---64368863142---565889999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHH
Q ss_conf 99999999999886431168978989999998502788899
Q gi|254780627|r 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 (502)
Q Consensus 330 e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~ 370 (502)
+.-...|.. .+ ++++... ++....++++.
T Consensus 172 ~~i~~~L~~---------~~--i~~~~a~-l~a~~~gs~~~ 200 (329)
T PRK08058 172 ESLIQRLQE---------EG--ISESLAT-LLAQLTNSVEE 200 (329)
T ss_pred HHHHHHHHH---------CC--CCHHHHH-HHHHHCCCHHH
T ss_conf 999999998---------79--9989999-99987899999
No 168
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=97.14 E-value=0.00082 Score=47.11 Aligned_cols=166 Identities=16% Similarity=0.191 Sum_probs=85.8
Q ss_pred HHHHHHHCCHHHHHHHCCCEEEEEEE---CCEEEE---EECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 99999866978897430240578853---998989---838989999999989999999999862776650789721455
Q gi|254780627|r 43 SSRLKNQVGPDVYASWFQRLKFHSVL---HNIVHL---SVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVAL 116 (502)
Q Consensus 43 l~~Lk~~l~~~~F~tWi~pL~~i~~e---~~~L~L---~vPn~FikdwIe~~Y~~~I~~al~~~~g~~~~I~i~i~~~~~ 116 (502)
...|+..++++.. ++|+.-..+++- ||.|-+ +-|-.+.-.-+.---.+.|-.......+..+.-+ +|...
T Consensus 3 ~r~l~~~lG~~i~-~~LdD~~vvEIMLNpDG~Lwve~Lg~G~~~~G~t~~~~~a~~Ii~~vA~~l~~~V~~~---~Pive 78 (315)
T TIGR02782 3 VRKLRRALGPEIA-AALDDPKVVEIMLNPDGKLWVERLGEGMEPLGKTVSPADAERIIGLVADYLGTEVDRD---KPIVE 78 (315)
T ss_pred HHHHHHHHHHHHH-HHHCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECC---CCEEE
T ss_conf 6789999899999-9737988389986698701050067973001661178999999999987644604357---86266
Q ss_pred CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 555555-5665544447533223222123554444543445576447887632886147899999999824100136555
Q gi|254780627|r 117 PSVEKT-ASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 (502)
Q Consensus 117 ~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~s~LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~ 195 (502)
...+-. ..+-=.= .-|+......+.-.. +=-.=||.|.|| +++-|-.+..-.+.+.-. ..
T Consensus 79 gELPldflGsRFeG----------l~PPVV~~p~F~IRk--kA~~vfTLDdYV--~~gimtaaQ~d~l~~Av~-----ar 139 (315)
T TIGR02782 79 GELPLDFLGSRFEG----------LLPPVVEAPSFAIRK--KAVRVFTLDDYV--EAGIMTAAQRDVLREAVA-----AR 139 (315)
T ss_pred ECCCCCHHHCCCCC----------CCCCCCCCCCCHHCC--CCCCCCCCHHHH--HHCCCCHHHHHHHHHHHH-----HC
T ss_conf 10751112011004----------687755655101110--224104707776--404455789999999997-----12
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH-HCCCCCEEEE
Q ss_conf 554898627888857999999999986-3068816864
Q gi|254780627|r 196 LNPLFIHASVGLGKTHLLQAIANASIK-RQPNLRVVYL 232 (502)
Q Consensus 196 ~NPLfi~G~~GlGKTHLl~ai~~~~~~-~~~~~~v~y~ 232 (502)
.|=| |-||+|.|||-|.+|+=+++.. +.|+-||+-+
T Consensus 140 ~NIl-v~GGTGSGKTTLaNAlla~I~~l~~P~dR~vIi 176 (315)
T TIGR02782 140 KNIL-VVGGTGSGKTTLANALLAEIAKLNDPDDRVVII 176 (315)
T ss_pred CCEE-EECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 9889-981458857999999999885216999618998
No 169
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=97.13 E-value=0.0042 Score=42.08 Aligned_cols=151 Identities=21% Similarity=0.308 Sum_probs=97.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCH-HHHHHHHHH-CCHHHHHHHHHHCCC--
Q ss_conf 8986278888579999999999863068816864698889999999861988-999999740-310205444453175--
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA-LNLKDSLRN-IDLLLIDDMQFLQGK-- 274 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~-~~fr~~~r~-~DvLliDDiqfl~gk-- 274 (502)
.++|||+|.|||-|..|++++-- +..+-+.+-+..+..+--. .+.+ +-|++--+. --++.+|.|.-++-+
T Consensus 578 vll~GPPGtGktllakava~es~-----anfi~v~GPe~lskWvGes-e~~ir~if~~arq~aP~~~f~deidaiaP~rG 651 (980)
T TIGR01243 578 VLLFGPPGTGKTLLAKAVATESG-----ANFIAVRGPEILSKWVGES-EKAIREIFRKARQAAPAIIFFDEIDAIAPARG 651 (980)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-----CCEEEECCCHHHHHHHCHH-HHHHHHHHHHHHHCCCEEEEEECHHHHCCCCC
T ss_conf 48746898616888887740145-----6467740731223440324-79999999986412873787302111054124
Q ss_pred -C---------HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHH--HHHHCCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf -0---------69999999999885698799964875676136303457--65302115775158889999999999988
Q gi|254780627|r 275 -L---------IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR--SRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 (502)
Q Consensus 275 -~---------tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~--SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~ 342 (502)
. .-+.++.-++-+.....-+|+++...|.-| ++-|. .||.. ++-+..||-+.|..|.+-
T Consensus 652 ~~~~~~~vtd~~~nqll~e~dG~~~~~~vvvi~atnrPdi~---dPallrPGr~dr--~i~vP~Pd~~ar~~ifk~---- 722 (980)
T TIGR01243 652 ASLDEKGVTDRIVNQLLTELDGLEELSDVVVIAATNRPDIL---DPALLRPGRLDR--LILVPAPDEEARLEIFKI---- 722 (980)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC---CCCCCCCCCCCE--EEEECCCCHHHHHHHHHH----
T ss_conf 42100102689999999864044343665898615887423---610048874121--686059855676767655----
Q ss_pred HHHHCCCCCCCHHH-HHHHHHHCCCC
Q ss_conf 64311689789899-99998502788
Q gi|254780627|r 343 SQKEDPKLNINEEV-LMHVARTVTTS 367 (502)
Q Consensus 343 ~~~~~~~~~l~~~v-~~~la~~~~~~ 367 (502)
+.+.++|.+|| ++-||....|-
T Consensus 723 ---ht~~~~l~~dv~l~~la~~teGy 745 (980)
T TIGR01243 723 ---HTRSMPLAEDVDLEELAKKTEGY 745 (980)
T ss_pred ---HHCCCCCCCCCCHHHHHHHHCCC
T ss_conf ---31113530134389998651687
No 170
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.12 E-value=0.0017 Score=44.95 Aligned_cols=69 Identities=25% Similarity=0.419 Sum_probs=48.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH-------HHHHHHHHH-----CCCHHHHH---HHHHHCCHH
Q ss_conf 898627888857999999999986306881686469888-------999999986-----19889999---997403102
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF-------MWRFASAIR-----DNCALNLK---DSLRNIDLL 263 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F-------~~~~~~a~~-----~~~~~~fr---~~~r~~DvL 263 (502)
+++-||+|+|||-.+--++..+.-.++..+|..+|++.| +..|..-+. -.+..+|+ ++++++|+.
T Consensus 197 i~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQLk~ya~il~vp~~vv~~~~~l~~~l~~~~~~d~I 276 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELAKALERLRDKDLI 276 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCCCCEE
T ss_conf 99977888757889999999999973899679998077767899999999999597489939999999999865798999
Q ss_pred HHHH
Q ss_conf 0544
Q gi|254780627|r 264 LIDD 267 (502)
Q Consensus 264 liDD 267 (502)
|||-
T Consensus 277 lIDT 280 (282)
T TIGR03499 277 LIDT 280 (282)
T ss_pred EEEC
T ss_conf 9819
No 171
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.11 E-value=0.0029 Score=43.25 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=46.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHC----CCCCEEEEEHHH-HHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCC
Q ss_conf 89862788885799999999998630----688168646988-8999999986198899999974031020544445317
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQ----PNLRVVYLTAEY-FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~----~~~~v~y~~~e~-F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~g 273 (502)
-=|||++|.|||.|...++-.+.... ++.+++|+.+|. |..+.+..+-.....+..+ ++|.+....-
T Consensus 22 tEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE~~f~~~rl~~i~~~~~~~~~~--------~l~~i~~~~~ 93 (226)
T cd01393 22 TEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEE--------VLDNIYVARP 93 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCHHH--------HHHHEEEECC
T ss_conf 99999999989999999999985422116999619999557753199999998760326677--------6433368437
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 5069999999999885
Q gi|254780627|r 274 KLIQHEFCHLLNSLLD 289 (502)
Q Consensus 274 k~tqee~f~~~n~l~~ 289 (502)
.+-|+++++++.+..
T Consensus 94 -~~~e~~~~~~~~l~~ 108 (226)
T cd01393 94 -YNGEQQLEIVEELER 108 (226)
T ss_pred -CCHHHHHHHHHHHHH
T ss_conf -999999999999998
No 172
>pfam00493 MCM MCM2/3/5 family.
Probab=97.10 E-value=0.0033 Score=42.79 Aligned_cols=127 Identities=23% Similarity=0.220 Sum_probs=63.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH-HHHHH-HCCCHHHHHHH-----HHHCCHHHHHHHHHH
Q ss_conf 898627888857999999999986306881686469888999-99998-61988999999-----740310205444453
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR-FASAI-RDNCALNLKDS-----LRNIDLLLIDDMQFL 271 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~-~~~a~-~~~~~~~fr~~-----~r~~DvLliDDiqfl 271 (502)
+.+-|.+|+|||.||+.+.. -.| +.+|++...=+.- ++.++ +.....+|.-+ .-+--|++||.+.-.
T Consensus 60 iLLvGdPG~gKSqlLk~~~~----~~p--r~~~tsg~~ss~~GLTa~~~~d~~~~~~~leaGalvlAd~Gv~cIDEfdk~ 133 (327)
T pfam00493 60 VLLVGDPGTAKSQLLKYVAK----LAP--RAVYTSGKGSSAAGLTAAVVRDPDTGEWTLEAGALVLADGGVCCIDEFDKM 133 (327)
T ss_pred EEEECCCCCCHHHHHHHHHH----HCC--CCEEECCCCCCCCCCEEEEEEECCCCCEEEECCCEEECCCCEEEEECCCCC
T ss_conf 89846998156099999998----688--708831776656776158998068883698368477558982785005558
Q ss_pred CCCCHHHHHHHHHHHHHHC-------C-------CEEEEECCCCH----------HHHCCCCHHHHHHH-HCCEEEEECC
Q ss_conf 1750699999999998856-------9-------87999648756----------76136303457653-0211577515
Q gi|254780627|r 272 QGKLIQHEFCHLLNSLLDS-------A-------KQVVAAADRPP----------SELESLDPRIRSRL-QGGVSVPLGL 326 (502)
Q Consensus 272 ~gk~tqee~f~~~n~l~~~-------g-------kqiv~tsd~~P----------~~l~~l~~rL~SR~-~~Gl~~~i~~ 326 (502)
.. ++|.-+. .++-++ | +..|+++-.|- .+--+|++-|.||| ..-++ ...
T Consensus 134 ~~-~d~saL~---EAMEqqtVsIaKaGi~~tL~ar~sVlAaaNP~~g~yd~~~~~~~ni~Lp~~lLsRFDLif~l--~D~ 207 (327)
T pfam00493 134 NE-EDRVAIH---EAMEQQTISIAKAGIVATLNARCSVLAAANPIFGRYDPKKSVAENINLPPPLLSRFDLIFVL--LDK 207 (327)
T ss_pred CH-HHHHHHH---HHHHHCEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCEEEEEEE--ECC
T ss_conf 87-6799999---99986817763385389725871799852776773788889888558976774501079884--068
Q ss_pred CCHHHHHHHHH
Q ss_conf 88899999999
Q gi|254780627|r 327 HDYEMRFSILK 337 (502)
Q Consensus 327 Pd~e~r~~Il~ 337 (502)
||.+.-..|.+
T Consensus 208 ~~~~~D~~ia~ 218 (327)
T pfam00493 208 PDEEKDEELAK 218 (327)
T ss_pred CCHHHHHHHHH
T ss_conf 98688999999
No 173
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.10 E-value=0.028 Score=36.22 Aligned_cols=111 Identities=19% Similarity=0.282 Sum_probs=65.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCC---CEEE-----------------EEHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 5489862788885799999999998630688---1686-----------------4698889999999861988999999
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNL---RVVY-----------------LTAEYFMWRFASAIRDNCALNLKDS 256 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~---~v~y-----------------~~~e~F~~~~~~a~~~~~~~~fr~~ 256 (502)
=|+.|-||||.||+.|+..+ .+..|.. .|.| +|.++|. ..++++..-+..+.
T Consensus 3 r~iil~Gpsg~GK~tl~~~l----~~~~~~~~~~~v~~TTR~~r~gE~~G~dY~Fvs~~~F~----~~i~~~~flE~~~~ 74 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAEL----IQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFE----DDIKSGLFLEWGEY 74 (184)
T ss_pred CEEEEECCCCCCHHHHHHHH----HHHCCCCEEEEEEEECCCCCCCCCCCCEEEEEEHHHHH----HHHHCCHHHHHHHH
T ss_conf 77999999999999999999----86396450577876727998899999636997179999----99872741788874
Q ss_pred HHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHH
Q ss_conf 74031020544445317506999999999988569879996487567613630345765302115775158889999999
Q gi|254780627|r 257 LRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 (502)
Q Consensus 257 ~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il 336 (502)
.-+ +-| |- ...++...++|+-+|+-.| |.-+.. |........++=|.||+.+.-.+-|
T Consensus 75 ~g~-----------~YG--t~---~~~I~~~~~~g~~~ildi~--~~g~~~----l~~~~~~~~~Ifi~pps~e~L~~RL 132 (184)
T smart00072 75 SGN-----------YYG--TS---KETIRQVAEQGKHCLLDID--PQGVKQ----LRKAQLYPIVIFIAPPSSEELERRL 132 (184)
T ss_pred CCC-----------CCC--CH---HHHHHHHHCCCCEEEEEEC--HHHHHH----HHHHCCCCEEEEEECCCHHHHHHHH
T ss_conf 787-----------754--10---6789998726986999962--999999----9985888079999389999999999
Q ss_pred H
Q ss_conf 9
Q gi|254780627|r 337 K 337 (502)
Q Consensus 337 ~ 337 (502)
+
T Consensus 133 ~ 133 (184)
T smart00072 133 R 133 (184)
T ss_pred H
T ss_conf 7
No 174
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.08 E-value=0.0036 Score=42.56 Aligned_cols=109 Identities=20% Similarity=0.273 Sum_probs=70.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH-------HHHHHHHH-----CCCHHHHH---HHHHHCCHHH
Q ss_conf 986278888579999999999863068816864698889-------99999986-----19889999---9974031020
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM-------WRFASAIR-----DNCALNLK---DSLRNIDLLL 264 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~-------~~~~~a~~-----~~~~~~fr---~~~r~~DvLl 264 (502)
.+-||+|+|||--+--++-...-++...+|-.+|++.|- ..|..-+. -.+.++|+ ++++++|+.|
T Consensus 180 alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l~~~dlIL 259 (404)
T PRK06995 180 ALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALAELRNKHIVL 259 (404)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCEEE
T ss_conf 98668887637589999999999838983799976875478999999999875955999599999999999708999999
Q ss_pred HHHHHHHCCC----CHHHHHHHHHHHH-HHCCCEEEEECCCCHHHHCCCCHHH
Q ss_conf 5444453175----0699999999998-8569879996487567613630345
Q gi|254780627|r 265 IDDMQFLQGK----LIQHEFCHLLNSL-LDSAKQVVAAADRPPSELESLDPRI 312 (502)
Q Consensus 265 iDDiqfl~gk----~tqee~f~~~n~l-~~~gkqiv~tsd~~P~~l~~l~~rL 312 (502)
||- +|. ..+.|....+... ..-...+|+++...+.+|..+-+|.
T Consensus 260 IDT----aGrs~rD~~~~e~l~~l~~~~~~~~~~LVLsat~~~~dl~~i~~~f 308 (404)
T PRK06995 260 IDT----VGMSQRDRMVSEQIAMLHGAGAPVQRLLLLNATSHGDTLNEVVQAY 308 (404)
T ss_pred EEC----CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 809----9989768889999999973578852899977989999999999984
No 175
>pfam00931 NB-ARC NB-ARC domain.
Probab=97.08 E-value=0.035 Score=35.57 Aligned_cols=179 Identities=16% Similarity=0.093 Sum_probs=90.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH--HHHCCCCCEEEEE----HHHHHHHHHHHHHCC-------CHH----HHHHHHHH-
Q ss_conf 48986278888579999999999--8630688168646----988899999998619-------889----99999740-
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANAS--IKRQPNLRVVYLT----AEYFMWRFASAIRDN-------CAL----NLKDSLRN- 259 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~--~~~~~~~~v~y~~----~e~F~~~~~~a~~~~-------~~~----~fr~~~r~- 259 (502)
=+-|||..|+|||-|.+++.|.. ....+..-.+.++ ..+....+...+... +.+ ..++..++
T Consensus 21 vI~I~G~gGiGKTtLA~~v~~~~~i~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~L~~k 100 (285)
T pfam00931 21 VVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFRLQKDILQELGLDDSDWVEKNESELAVKIKEALLRK 100 (285)
T ss_pred EEEEECCCCCCHHHHHHHHHCCHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99988999563999999997165565059838999979766689999999998566654555578999999999997279
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHH-CCEEEEECCCCHHHHHHHHHH
Q ss_conf 3102054444531750699999999998856987999648756761363034576530-211577515888999999999
Q gi|254780627|r 260 IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ-GGVSVPLGLHDYEMRFSILKN 338 (502)
Q Consensus 260 ~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~-~Gl~~~i~~Pd~e~r~~Il~~ 338 (502)
-=+|++|||..- ..-+.+...+.. ..+|-.||+|+...- ....+. ..-+.++++.+.+.-..++.+
T Consensus 101 r~LiVLDDVw~~---~~~~~l~~~~~~-~~~gSrIIvTTR~~~---------V~~~~~~~~~~~~l~~L~~~es~~Lf~~ 167 (285)
T pfam00931 101 RFLLVLDDVWEK---NDWDKIGVPFPD-GENGSRVIVTTRSES---------VAGRMGGTSKPHEVESLEPEESWELFSN 167 (285)
T ss_pred CEEEEECCCCCH---HHHHHHHCCCCC-CCCCCEEEEECCCHH---------HHHHCCCCCCEEECCCCCHHHHHHHHHH
T ss_conf 669996388878---999997345757-899827998557589---------9987378883476168987999999999
Q ss_pred HHHHHHHHCCCCCCC---HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 998864311689789---89999998502788899999999999986302468778899999876
Q gi|254780627|r 339 RLAISQKEDPKLNIN---EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHL 400 (502)
Q Consensus 339 k~~~~~~~~~~~~l~---~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~ 400 (502)
++... ....+ +++..-|++.+.|.. =|+..+... +....+...=+.+++.+
T Consensus 168 ~a~~~-----~~~~~~~l~~~~~~Iv~~C~GlP----Lai~~lg~~--L~~k~~~~~W~~~l~~l 221 (285)
T pfam00931 168 KVFEK-----ELPPCPELEEVAKEIVEKCKGLP----LALKVLGGL--LAFKSTVQEWEHVLEQL 221 (285)
T ss_pred HHCCC-----CCCCCHHHHHHHHHHHHHHCCCH----HHHHHHHHH--HCCCCCHHHHHHHHHHH
T ss_conf 84689-----89997679999999999858994----999999999--71799899999999975
No 176
>PRK04328 hypothetical protein; Provisional
Probab=97.05 E-value=0.011 Score=39.03 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=37.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH
Q ss_conf 54898627888857999999999986306881686469888999999986
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~ 246 (502)
....|.|++|.|||-|..-...+-.++ +-+++|+|.|+--.+++...+
T Consensus 25 s~~Lv~G~pGtGKT~la~qFl~~g~~~--GE~~lyis~eE~~~~l~~~~~ 72 (250)
T PRK04328 25 NVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEEHPVQVRRNMA 72 (250)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHC--CCCEEEEEEECCHHHHHHHHH
T ss_conf 699998289999899999999999876--997799997279999999999
No 177
>KOG1968 consensus
Probab=97.03 E-value=0.0053 Score=41.35 Aligned_cols=160 Identities=18% Similarity=0.209 Sum_probs=107.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH------HHHHHHHHHHHCCCHHHHHHHH------HHCC-HHHH
Q ss_conf 8986278888579999999999863068816864698------8899999998619889999997------4031-0205
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE------YFMWRFASAIRDNCALNLKDSL------RNID-LLLI 265 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e------~F~~~~~~a~~~~~~~~fr~~~------r~~D-vLli 265 (502)
+.++|+.|+|||-.+|+++-+..- +|+=..|+ ...+.+-.+.....+..++.++ +..+ |+|+
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~-----~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~ 434 (871)
T KOG1968 360 LLLSGPPGIGKTTAAHKAAKELGF-----KVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILM 434 (871)
T ss_pred HHHCCCCCCCCHHHHHHHHHHCCC-----CEEECCCCCCCCCCHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCEEEEEE
T ss_conf 873178877720567663012065-----401047543344227776640244664000111111330004666069997
Q ss_pred HHHHHHCCC-C-HHHHHHHHHHHHHHCCCEEEEEC-CCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 444453175-0-69999999999885698799964-87567613630345765302115775158889999999999988
Q gi|254780627|r 266 DDMQFLQGK-L-IQHEFCHLLNSLLDSAKQVVAAA-DRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 (502)
Q Consensus 266 DDiqfl~gk-~-tqee~f~~~n~l~~~gkqiv~ts-d~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~ 342 (502)
|++.-..|. + --.++-.+.+ ..-+.||++| |+.+-....+ +| .++.+.+..|+.++...-+..-
T Consensus 435 devD~~~~~dRg~v~~l~~l~~---ks~~Piv~~cndr~~p~sr~~-----~~--~~~~l~f~kP~~~~i~~ri~si--- 501 (871)
T KOG1968 435 DEVDGMFGEDRGGVSKLSSLCK---KSSRPLVCTCNDRNLPKSRAL-----SR--ACSDLRFSKPSSELIRSRIMSI--- 501 (871)
T ss_pred ECCCCCCCHHHHHHHHHHHHHH---HCCCCEEEEECCCCCCCCCCH-----HH--HCCEEEECCCCHHHHHHHHHHH---
T ss_conf 4255442000136999999998---635776887337777665202-----23--2002340488577777666533---
Q ss_pred HHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 643116897898999999850278889999999999
Q gi|254780627|r 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 (502)
Q Consensus 343 ~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l 378 (502)
...+++.+++++++-+.....+++|+..+-|...
T Consensus 502 --~~se~~ki~~~~l~~~s~~~~~DiR~~i~~lq~~ 535 (871)
T KOG1968 502 --CKSEGIKISDDVLEEISKLSGGDIRQIIMQLQFW 535 (871)
T ss_pred --HCCCCEECCCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf --0246424172788999875064799999877644
No 178
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.0038 Score=42.38 Aligned_cols=114 Identities=19% Similarity=0.192 Sum_probs=76.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH------------CCCHHHH---HHHHHHCCHH
Q ss_conf 898627888857999999999986306881686469888999999986------------1988999---9997403102
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR------------DNCALNL---KDSLRNIDLL 263 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~------------~~~~~~f---r~~~r~~DvL 263 (502)
+-+-||+|+|||-=+--++-.+..++...+|..+|.+.|----..-++ -.+..++ -..++++|+.
T Consensus 351 ~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l~~~l~~l~~~~lv 430 (557)
T PRK12727 351 IALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYKLV 430 (557)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHCCCCEE
T ss_conf 78743777673117999999999973998189997266408799999999998397579828999999999983699989
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHH
Q ss_conf 0544445317506999999999988569879996487567613630345
Q gi|254780627|r 264 LIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 (502)
Q Consensus 264 liDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL 312 (502)
|||-.-.=.......+-++.++....-...+|+++...+.+|...-.++
T Consensus 431 liDTaG~~~rd~~~~~~~~~l~~~~~~~~~Lvl~a~~~~~~l~~~~~~~ 479 (557)
T PRK12727 431 LIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRF 479 (557)
T ss_pred EEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 9949998846999999999875147763599996889989999999985
No 179
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.98 E-value=0.0032 Score=42.90 Aligned_cols=42 Identities=26% Similarity=0.236 Sum_probs=29.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH----HCCCCCEEEEEHHH-HHHH
Q ss_conf 898627888857999999999986----30688168646988-8999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIK----RQPNLRVVYLTAEY-FMWR 240 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~----~~~~~~v~y~~~e~-F~~~ 240 (502)
.-|||++|.|||+|...++-.+.. ...+.+|+|+++|. |..+
T Consensus 22 tEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE~~f~~~ 68 (235)
T cd01123 22 TEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPE 68 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
T ss_conf 99999999849999999999984247536789629999536775889
No 180
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=96.94 E-value=0.0011 Score=46.35 Aligned_cols=100 Identities=17% Similarity=0.304 Sum_probs=60.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH-HHHHHHCC--------CHHHHHHHH--HHCCHHHHHH
Q ss_conf 898627888857999999999986306881686469888999-99998619--------889999997--4031020544
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR-FASAIRDN--------CALNLKDSL--RNIDLLLIDD 267 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~-~~~a~~~~--------~~~~fr~~~--r~~DvLliDD 267 (502)
++++||+|+|||.|..+++..+... ....+.+.+.+|+.+ .++.+-.. ..-.+-+.. +..-|+++|.
T Consensus 6 ~l~~GPsGvGKT~lAk~la~~l~~~--~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~~v~~~p~~VillDE 83 (168)
T pfam07724 6 FLFLGPTGVGKTELAKALAELLFGD--ERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVLIDE 83 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC--CCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEHH
T ss_conf 9988989989999999999996798--53448855756542569998705899872624265078999838984898657
Q ss_pred HHHHCCCCHHHHHHHHHHH--HHH-CCCE-------EEEECCCC
Q ss_conf 4453175069999999999--885-6987-------99964875
Q gi|254780627|r 268 MQFLQGKLIQHEFCHLLNS--LLD-SAKQ-------VVAAADRP 301 (502)
Q Consensus 268 iqfl~gk~tqee~f~~~n~--l~~-~gkq-------iv~tsd~~ 301 (502)
|.-. ....|.-|+.+++. +.+ .|++ +|+||.-.
T Consensus 84 IeKa-~~~V~~~LL~ild~g~~~d~~g~~v~~~n~i~i~Tsn~g 126 (168)
T pfam07724 84 IEKA-HPGVQNDLLQILEGGTLTDKQGRKVDFRNTLFIMTGNFG 126 (168)
T ss_pred HHHH-CHHHHHHHHHHCCCCCEECCCCCEEECCCEEEEECCCCC
T ss_conf 7665-899999999870587063699967844647999768737
No 181
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=96.94 E-value=0.03 Score=36.00 Aligned_cols=110 Identities=25% Similarity=0.294 Sum_probs=70.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHC-CC
Q ss_conf 55489862788885799999999998630688168646988899999998619889999997403102054444531-75
Q gi|254780627|r 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ-GK 274 (502)
Q Consensus 196 ~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~-gk 274 (502)
+....|+|.+|+|||.||++..+. +..| +.-|...++- ...|=. +. +.
T Consensus 127 ~~~~vl~G~TG~GKT~iL~~L~~~------G~qv--iDLEglAnHR--------GS~FG~---------------~~~~~ 175 (311)
T TIGR03167 127 FPLIVLGGMTGSGKTELLHALANA------GAQV--LDLEGLANHR--------GSSFGA---------------LGLGP 175 (311)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHC------CCCC--CCHHHHHHCC--------CCCCCC---------------CCCCC
T ss_conf 876998788887789999999976------9974--2589986314--------653468---------------88899
Q ss_pred C-HHHHHH-HHHHHHH--HCCCEEEEECC-CCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHH
Q ss_conf 0-699999-9999988--56987999648-756761363034576530211577515888999999999
Q gi|254780627|r 275 L-IQHEFC-HLLNSLL--DSAKQVVAAAD-RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 (502)
Q Consensus 275 ~-tqee~f-~~~n~l~--~~gkqiv~tsd-~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~ 338 (502)
+ ||..|= .++..|. +..+.|++-+. +.-..+ .+++.|..++..|-.+.|+.| +|.|++.|..
T Consensus 176 QPsQk~FEn~l~~~l~~~~~~~~i~vE~ES~~IG~~-~iP~~l~~~M~~a~~i~i~~~-le~Rv~~l~~ 242 (311)
T TIGR03167 176 QPSQKRFENALAEALRRLDPGRPIFVEDESRRIGRV-ALPDALFEAMRAAPLVELEAS-LEERVERLVE 242 (311)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCCHHHHHHHHCCCEEEEECC-HHHHHHHHHH
T ss_conf 978999999999999817888956996033130571-389999999851998999899-9999999999
No 182
>KOG0736 consensus
Probab=96.91 E-value=0.0091 Score=39.70 Aligned_cols=155 Identities=22% Similarity=0.333 Sum_probs=99.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHH--CCHHHHHHHHHHC--
Q ss_conf 548986278888579999999999863068816864698889999999861988999999740--3102054444531--
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN--IDLLLIDDMQFLQ-- 272 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~--~DvLliDDiqfl~-- 272 (502)
.-+.+|||+|.|||-|..|++.|+. ...+-+..-+..|-||--.-.|--+-| +|-|+ -=|+-+|.+.-++
T Consensus 706 SGILLYGPPGTGKTLlAKAVATEcs-----L~FlSVKGPELLNMYVGqSE~NVR~VF-erAR~A~PCVIFFDELDSlAP~ 779 (953)
T KOG0736 706 SGILLYGPPGTGKTLLAKAVATECS-----LNFLSVKGPELLNMYVGQSEENVREVF-ERARSAAPCVIFFDELDSLAPN 779 (953)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCE-----EEEEEECCHHHHHHHHCCHHHHHHHHH-HHHHCCCCEEEEECCCCCCCCC
T ss_conf 5058877999855799999875430-----367850588998877430188899999-9854469749983121232756
Q ss_pred ----CC------CHHHHHHHHHHHHHH--CCCEEEEECCCCHHHHCCCCHHHH--HHHHCCEEEEECCCCHHHHHHHHHH
Q ss_conf ----75------069999999999885--698799964875676136303457--6530211577515888999999999
Q gi|254780627|r 273 ----GK------LIQHEFCHLLNSLLD--SAKQVVAAADRPPSELESLDPRIR--SRLQGGVSVPLGLHDYEMRFSILKN 338 (502)
Q Consensus 273 ----gk------~tqee~f~~~n~l~~--~gkqiv~tsd~~P~~l~~l~~rL~--SR~~~Gl~~~i~~Pd~e~r~~Il~~ 338 (502)
|. +.--.++--+|-|.+ ..+--|+.+..-|.-| |+-|. .||--=+-|.+.. |.|.+.+||+.
T Consensus 780 RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLL---DpALLRPGRFDKLvyvG~~~-d~esk~~vL~A 855 (953)
T KOG0736 780 RGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLL---DPALLRPGRFDKLVYVGPNE-DAESKLRVLEA 855 (953)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC---CHHHCCCCCCCEEEEECCCC-CHHHHHHHHHH
T ss_conf 788788654089999999998626667888865998258885545---76553887655248855885-67889999999
Q ss_pred HHHHHHHHCCCCCCCHHH-HHHHHHHCCCCH
Q ss_conf 998864311689789899-999985027888
Q gi|254780627|r 339 RLAISQKEDPKLNINEEV-LMHVARTVTTSG 368 (502)
Q Consensus 339 k~~~~~~~~~~~~l~~~v-~~~la~~~~~~v 368 (502)
.-+.+.++++| +.-||+++..+.
T Consensus 856 -------lTrkFkLdedVdL~eiAk~cp~~~ 879 (953)
T KOG0736 856 -------LTRKFKLDEDVDLVEIAKKCPPNM 879 (953)
T ss_pred -------HHHHCCCCCCCCHHHHHHHCCCCC
T ss_conf -------887702878767999996389677
No 183
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.89 E-value=0.0077 Score=40.19 Aligned_cols=82 Identities=26% Similarity=0.294 Sum_probs=54.9
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHHHCCCCCEEEEEHHH-HHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCH
Q ss_conf 89862788885799-999999998630688168646988-8999999986198899999974031020544445317506
Q gi|254780627|r 199 LFIHASVGLGKTHL-LQAIANASIKRQPNLRVVYLTAEY-FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI 276 (502)
Q Consensus 199 Lfi~G~~GlGKTHL-l~ai~~~~~~~~~~~~v~y~~~e~-F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~t 276 (502)
.=|||+++.|||.| ||++++ ..+. +..++|+.+|. |..+|..++ .+|+ |++- +..-.+
T Consensus 58 vei~G~essGKTtlal~~ia~-aQk~--gg~~~~iDaE~a~d~~~a~~l-------------GVD~---~~l~-~~qp~~ 117 (325)
T cd00983 58 IEIYGPESSGKTTLALHAIAE-AQKL--GGTVAFIDAEHALDPVYAKKL-------------GVDL---DNLL-ISQPDT 117 (325)
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHHC--CCEEEEEEHHHCCCHHHHHHC-------------CCCH---HHEE-EECCCH
T ss_conf 999889877799999999999-8735--983999962542598999980-------------9984---6758-966638
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 999999999988569879996487
Q gi|254780627|r 277 QHEFCHLLNSLLDSAKQVVAAADR 300 (502)
Q Consensus 277 qee~f~~~n~l~~~gkqiv~tsd~ 300 (502)
-|+.+.+++.|...|..-++.-|.
T Consensus 118 ~Eq~l~i~~~li~s~~~dliViDS 141 (325)
T cd00983 118 GEQALEIADSLVRSGAVDLIVVDS 141 (325)
T ss_pred HHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 999999999975158876799815
No 184
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.89 E-value=0.015 Score=38.23 Aligned_cols=157 Identities=19% Similarity=0.226 Sum_probs=88.1
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE---EHHHHHHH
Q ss_conf 876328861478999999998241001365555548986278888579999999999863068816864---69888999
Q gi|254780627|r 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL---TAEYFMWR 240 (502)
Q Consensus 164 FDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~---~~e~F~~~ 240 (502)
.+..++| .-+....+-.++.. | -|+++-|++|+|||-|..+++..+- .|-.+|.+. ++++.+-.
T Consensus 22 ~~~~~~g-~~~~~~~~l~a~~~--~--------~~vll~G~PG~gKT~la~~lA~~l~--~~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 22 LEKVVVG-DEEVIELALLALLA--G--------GHVLLEGPPGVGKTLLARALARALG--LPFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred CCCCCCC-CHHHHHHHHHHHHC--C--------CCEEEECCCCCCHHHHHHHHHHHHC--CCCEEEECCCCCCHHHHCCH
T ss_conf 2565526-69999999999985--9--------9778779898777999999999838--98189956899888882056
Q ss_pred HHHHHHC--CCHHHHHHHHHHCC---HHHHHHHHHHCCCCHHHHHHHHHHH----------HHHCCCEEEEECCCCHHHH
Q ss_conf 9999861--98899999974031---0205444453175069999999999----------8856987999648756761
Q gi|254780627|r 241 FASAIRD--NCALNLKDSLRNID---LLLIDDMQFLQGKLIQHEFCHLLNS----------LLDSAKQVVAAADRPPSEL 305 (502)
Q Consensus 241 ~~~a~~~--~~~~~fr~~~r~~D---vLliDDiqfl~gk~tqee~f~~~n~----------l~~~gkqiv~tsd~~P~~l 305 (502)
++...+. .....|....--.. +|++|-|-.- ..++|.-|+..++. ..-...-+|+++-. |-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra-~p~~q~aLl~~l~e~~vt~~~~~~~~~~~~f~viaT~N-p~e~ 166 (329)
T COG0714 89 YAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRA-PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQN-PGEY 166 (329)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCEEEEEECCCCC-CHHHHHHHHHHHHHCEEEECCCCCCCCCCCCEEEEECC-CCCC
T ss_conf 888766425771898468733451338998703458-98899999999972689707966533799878998268-6765
Q ss_pred C---CCCHHHHHHHHCCEEEEECCCCHHHHHHHHH
Q ss_conf 3---6303457653021157751588899999999
Q gi|254780627|r 306 E---SLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 (502)
Q Consensus 306 ~---~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~ 337 (502)
. .+.+-+..||. +...+..|+.+.-..++.
T Consensus 167 ~g~~~l~eA~ldRf~--~~~~v~yp~~~~e~~~i~ 199 (329)
T COG0714 167 EGTYPLPEALLDRFL--LRIYVDYPDSEEEERIIL 199 (329)
T ss_pred CCCCCCCHHHHCCCE--EEEECCCCCCHHHHHHHH
T ss_conf 788789988881038--877648997388999998
No 185
>KOG0742 consensus
Probab=96.89 E-value=0.049 Score=34.47 Aligned_cols=134 Identities=25% Similarity=0.332 Sum_probs=77.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH---HHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHH-HHCC
Q ss_conf 4898627888857999999999986306881686469888---99999998619889999997403102054444-5317
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF---MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ-FLQG 273 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F---~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiq-fl~g 273 (502)
-...|||+|.|||-....++. +.+.--..+|.-+- ..+-|.+|. .+-+.-++-|.-=+|.||.-. ||.-
T Consensus 386 NilfyGPPGTGKTm~ArelAr-----~SGlDYA~mTGGDVAPlG~qaVTkiH--~lFDWakkS~rGLllFIDEADAFLce 458 (630)
T KOG0742 386 NILFYGPPGTGKTMFARELAR-----HSGLDYAIMTGGDVAPLGAQAVTKIH--KLFDWAKKSRRGLLLFIDEADAFLCE 458 (630)
T ss_pred HEEEECCCCCCHHHHHHHHHH-----HCCCCEEHHCCCCCCCCHHHHHHHHH--HHHHHHHHCCCCEEEEEHHHHHHHHH
T ss_conf 003247999860499999988-----52874100137875552178899999--98788751566449986116789987
Q ss_pred --C-CHHHHHHHHHHHHHH-CC---CE--EEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf --5-069999999999885-69---87--999648756761363034576530211577515888999999999998864
Q gi|254780627|r 274 --K-LIQHEFCHLLNSLLD-SA---KQ--VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 (502)
Q Consensus 274 --k-~tqee~f~~~n~l~~-~g---kq--iv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~ 344 (502)
| ...|-.=..+|+|.= -| +. +|+++.+ |.+ |+.-...|+.- +++-.-|.-|.|.++|.-.+..+.
T Consensus 459 RnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNr-pgd---lDsAV~DRide--~veFpLPGeEERfkll~lYlnkyi 532 (630)
T KOG0742 459 RNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNR-PGD---LDSAVNDRIDE--VVEFPLPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCC-CCC---HHHHHHHHHHH--HEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 520102588999998898762565542689960588-321---01678765554--130689977899999999999981
No 186
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.89 E-value=0.05 Score=34.45 Aligned_cols=171 Identities=19% Similarity=0.195 Sum_probs=95.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCC-------------------CCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 54898627888857999999999986306-------------------88168646988899999998619889999997
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQP-------------------NLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~-------------------~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~ 257 (502)
.+|.+||++|.|||-+.+++++++....+ .-.++-+++.+=-.. .+....+.+|.+..
T Consensus 25 halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~---~i~~~~vr~~~~~~ 101 (325)
T COG0470 25 HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKI---DIIVEQVRELAEFL 101 (325)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCC---CCHHHHHHHHHHHC
T ss_conf 610037999997899999999996586643345520022444320256886599773213333---00699999999860
Q ss_pred ------HHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHH
Q ss_conf ------40310205444453175069999999999885698799964875676136303457653021157751588899
Q gi|254780627|r 258 ------RNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 (502)
Q Consensus 258 ------r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~ 331 (502)
-..-|.+||+++-+.. ..|..+.-+.. -...+-.++++|+ .|..+ -+-++||. ..+.+.+|....
T Consensus 102 ~~~~~~~~~kviiidead~mt~-~A~nallk~lE-ep~~~~~~il~~n-~~~~i---l~tI~SRc---~~i~f~~~~~~~ 172 (325)
T COG0470 102 SESPLEGGYKVVIIDEADKLTE-DAANALLKTLE-EPPKNTRFILITN-DPSKI---LPTIRSRC---QRIRFKPPSRLE 172 (325)
T ss_pred CCCCCCCCCEEEEEECCCCCCH-HHHHHHHHHCC-CCCCCEEEEEEEC-CHHHC---HHHHHHHE---EEEECCCCCHHH
T ss_conf 4465667726999732032698-88876754332-4888716999749-85556---47877560---788767741889
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999999999886431168978989999998502788899999999999986302468778899999876
Q gi|254780627|r 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHL 400 (502)
Q Consensus 332 r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~ 400 (502)
++..++ ++.++.++....++.|. +++.+.+.+.. ......+.+++...
T Consensus 173 ~i~~~e----------------~~~l~~i~~~~~gd~r~---~i~~lq~~~~~--~~~~~~~~~~~~~~ 220 (325)
T COG0470 173 AIAWLE----------------DQGLEEIAAVAEGDARK---AINPLQALAAL--EIGEESIYEALLLA 220 (325)
T ss_pred HHHHHH----------------HHHHHHHHHHHCCHHHH---HCCHHHHHHHC--CCCHHHHHHHHHHH
T ss_conf 999850----------------75799999870406887---34899999861--44467899998765
No 187
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.87 E-value=0.014 Score=38.30 Aligned_cols=151 Identities=15% Similarity=0.213 Sum_probs=87.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHH-----H--HHHHHHC---------CCHHHHHH---H-
Q ss_conf 5489862788885799999999998630688168646988899-----9--9999861---------98899999---9-
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW-----R--FASAIRD---------NCALNLKD---S- 256 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~-----~--~~~a~~~---------~~~~~fr~---~- 256 (502)
+-+.++|+.|+||+.+..+++..+.-..++..... .+..+.. + +++.+.+ -.+++.|+ +
T Consensus 27 HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~~~~~~~-~~~~~i~~g~HPD~~~i~~~~~~~~~k~k~~I~IdqiR~l~~~~ 105 (319)
T PRK08769 27 HGLLICGPEGLGKRAVALALAEHVLASGPDPALAQ-RTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCC-HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 06875899987899999999999837997976543-38899966899896877534444543112348699999999996
Q ss_pred ----HH-HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHH
Q ss_conf ----74-0310205444453175069999999999885698799964875676136303457653021157751588899
Q gi|254780627|r 257 ----LR-NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 (502)
Q Consensus 257 ----~r-~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~ 331 (502)
+. ..-|.+||+.+.+. ..++.-|+-|+.+- ..+--+|++++.+- .+.+-++||.. .+.+.+|..|.
T Consensus 106 ~~~p~~g~~KV~IId~Ad~mn-~~AaNalLK~LEEP-p~~~~~iL~~~~~~----~ll~TI~SRCq---~~~~~~p~~~~ 176 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAIN-RSACNALLKTLEEP-SPGRYLWLISAQPA----RLPATIRSRCQ---RLEFKLPPAHE 176 (319)
T ss_pred HHCCCCCCCEEEEECCHHHCC-HHHHHHHHHHHCCC-CCCEEEEEEECCHH----HCCHHHHHCCE---EECCCCCCHHH
T ss_conf 137202795699980667528-99999999982279-98848999869936----58247764850---11189969999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCH
Q ss_conf 9999999998864311689789899999985027888
Q gi|254780627|r 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 (502)
Q Consensus 332 r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~v 368 (502)
-.+.|+.. | +++......+.-..+.+
T Consensus 177 ~~~~L~~~---------g--~~~~~a~~~l~~a~g~p 202 (319)
T PRK08769 177 ALAWLLSQ---------G--VSERAAQEALDAARGHP 202 (319)
T ss_pred HHHHHHHC---------C--CCHHHHHHHHHHHCCCH
T ss_conf 99999975---------9--99189999999827996
No 188
>KOG2228 consensus
Probab=96.87 E-value=0.02 Score=37.33 Aligned_cols=141 Identities=16% Similarity=0.196 Sum_probs=81.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE--EHHHHH-----HHHHHHH--HC-------CC-HHHH------
Q ss_conf 548986278888579999999999863068816864--698889-----9999998--61-------98-8999------
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL--TAEYFM-----WRFASAI--RD-------NC-ALNL------ 253 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~--~~e~F~-----~~~~~a~--~~-------~~-~~~f------ 253 (502)
|-+.|-||-|.|||-|+..+--. .+.+.+ +.+-+ .++--+ ++.+.-+ +. +. .+.|
T Consensus 50 nsviiigprgsgkT~li~~~Ls~-~q~~~E-~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~ 127 (408)
T KOG2228 50 NSVIIIGPRGSGKTILIDTRLSD-IQENGE-NFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEA 127 (408)
T ss_pred CCEEEECCCCCCCEEEEHHHHHH-HHHCCC-EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHH
T ss_conf 72699814778816740778766-775177-2799987850015589999999999999753212422533469999998
Q ss_pred ---HHHHHHC-CHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEC-CCCHHHHCCCCHHHHHHHHCCEEEEECCCC
Q ss_conf ---9997403-10205444453175069999999999885698799964-875676136303457653021157751588
Q gi|254780627|r 254 ---KDSLRNI-DLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAA-DRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 (502)
Q Consensus 254 ---r~~~r~~-DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~ts-d~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd 328 (502)
+++--++ =++++|.+..+++..-|.-++|.||--..+.-.|-+-+ ...-.-+.-|+.|.+|||+.-.+-=..+-.
T Consensus 128 L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~ 207 (408)
T KOG2228 128 LKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLP 207 (408)
T ss_pred HHCCCCCCCCEEEEEEEHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 73378778851999831000246403567899998887624798699985032338999999987433552462269888
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999999
Q gi|254780627|r 329 YEMRFSILKNR 339 (502)
Q Consensus 329 ~e~r~~Il~~k 339 (502)
++.-..|.++-
T Consensus 208 l~~yv~l~r~l 218 (408)
T KOG2228 208 LGDYVDLYRKL 218 (408)
T ss_pred HHHHHHHHHHH
T ss_conf 58899999997
No 189
>KOG2004 consensus
Probab=96.86 E-value=0.013 Score=38.58 Aligned_cols=179 Identities=18% Similarity=0.209 Sum_probs=106.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH----HHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHC-
Q ss_conf 4898627888857999999999986306881686469888----99999998619889999997403102054444531-
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF----MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ- 272 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F----~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~- 272 (502)
-|-++||+|+|||-+-.+|+..+-+++-...|==++-+.= -+.||-|+-.+-++.+|.-=-+-.+.|||.|.-+.
T Consensus 440 IlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~ 519 (906)
T KOG2004 440 ILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGS 519 (906)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCEEEEEHHHHHCC
T ss_conf 79986899877321899999984874699853663427764254211001488489999986177886588532234178
Q ss_pred ---CC-C-HHHHHH-----HHHHH-----HHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHH
Q ss_conf ---75-0-699999-----99999-----885698799964875676136303457653021157751588899999999
Q gi|254780627|r 273 ---GK-L-IQHEFC-----HLLNS-----LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 (502)
Q Consensus 273 ---gk-~-tqee~f-----~~~n~-----l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~ 337 (502)
|. + +.-|++ +.|+. =++-. +++|.|- .+.+..+++-|..|++- .++.-=-.|.+++|.+
T Consensus 520 g~qGDPasALLElLDPEQNanFlDHYLdVp~DLS-kVLFicT--AN~idtIP~pLlDRMEv---IelsGYv~eEKv~IA~ 593 (906)
T KOG2004 520 GHQGDPASALLELLDPEQNANFLDHYLDVPVDLS-KVLFICT--ANVIDTIPPPLLDRMEV---IELSGYVAEEKVKIAE 593 (906)
T ss_pred CCCCCHHHHHHHHCCHHHCCCHHHHCCCCCCCHH-HEEEEEE--CCCCCCCCHHHHHHHHE---EECCCCCHHHHHHHHH
T ss_conf 8779868999874396535534542026642111-0688985--36445698566412232---2036722798999999
Q ss_pred HHHHH-----HHHHCCCCCCCHHHHHHHHHHCC--CCHHHHHHHHHHHHHHH
Q ss_conf 99988-----64311689789899999985027--88899999999999986
Q gi|254780627|r 338 NRLAI-----SQKEDPKLNINEEVLMHVARTVT--TSGRELDGAFNQLVFRH 382 (502)
Q Consensus 338 ~k~~~-----~~~~~~~~~l~~~v~~~la~~~~--~~vR~Legal~~l~~~~ 382 (502)
+.+.- +.....++.++++++.-|-++.. +.||.|+--+-++...+
T Consensus 594 ~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~Rk~ 645 (906)
T KOG2004 594 RYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKICRKV 645 (906)
T ss_pred HHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8412578987499878658629999999999988876778999999999999
No 190
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.83 E-value=0.025 Score=36.61 Aligned_cols=164 Identities=20% Similarity=0.243 Sum_probs=84.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC---EEEEEHHHHHHHHHHHHHCC----------CHHHHHHHHHHCCHH
Q ss_conf 54898627888857999999999986306881---68646988899999998619----------889999997403102
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLR---VVYLTAEYFMWRFASAIRDN----------CALNLKDSLRNIDLL 263 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~---v~y~~~e~F~~~~~~a~~~~----------~~~~fr~~~r~~DvL 263 (502)
.=+.|.||||+|||.|++.+ .+.+|+.- |-|+| ..-|.+ +-++|.+...+=..|
T Consensus 8 ~livisGPSG~GK~tl~~~L----~~~~p~~~~~~vs~TT---------R~pR~~E~dG~dY~Fvs~eeF~~~i~~g~Fl 74 (208)
T PRK00300 8 LLIVLSAPSGAGKSTLVRAL----LERDPNDLQLSVSATT---------RAPRPGEVDGVHYHFVSREEFEEMIENGEFL 74 (208)
T ss_pred CEEEEECCCCCCHHHHHHHH----HHHCCCCEEEEEEEEC---------CCCCCCCCCCCEEEEECHHHHHHHHHHCCCE
T ss_conf 38999999988999999999----9729986899897468---------8989987789657996199999998628366
Q ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 05444453175-06999999999988569879996487567613630345765302115775158889999999999988
Q gi|254780627|r 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 (502)
Q Consensus 264 liDDiqfl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~ 342 (502)
--- ++..+. .|. ...++...++|+-+|+--| ++ |.. .|++.+...+.+=|.||+++.-..=|++
T Consensus 75 E~~--~~~g~~YGT~---~~~I~~~~~~G~~vildid--vq---Ga~-~lk~~~~~~~~IFI~Pps~e~L~~RL~~---- 139 (208)
T PRK00300 75 EWA--EVFGNYYGTP---REPVEEALAAGKDVLLEID--WQ---GAQ-QVKKKMPDAVSIFILPPSLEELERRLRG---- 139 (208)
T ss_pred EEE--EECCCCEECC---HHHHHHHHHCCCCEEEECC--HH---HHH-HHHHHCCCCEEEEEECCCHHHHHHHHHH----
T ss_conf 789--9838703524---6999999856998797467--89---999-9998597757999828899999999986----
Q ss_pred HHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHCCC
Q ss_conf 643116897898999999850278889999999999998630246---87788999998763037
Q gi|254780627|r 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI---LTAEIADELLSHLVNTG 404 (502)
Q Consensus 343 ~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~---~~~~~~~~~l~~~~~~~ 404 (502)
++-. +++.++ .+ |.-|-..+.....+.-. -+++.+-+.|..++...
T Consensus 140 -----Rg~e-s~~~I~---~R-------l~~A~~El~~~~~fD~vIiNddl~~a~~~l~~ii~~e 188 (208)
T PRK00300 140 -----RGTD-SEEVIA---RR-------LEAAKEEIAHASEYDYVIVNDDLETALEELKAIIRAE 188 (208)
T ss_pred -----CCCC-CHHHHH---HH-------HHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHH
T ss_conf -----3899-888999---99-------9999999988855999998999999999999999998
No 191
>KOG0726 consensus
Probab=96.82 E-value=0.0013 Score=45.76 Aligned_cols=138 Identities=20% Similarity=0.332 Sum_probs=80.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHH-----CCHHHHHHHHHHCC
Q ss_conf 8986278888579999999999863068816864698889999999861988999999740-----31020544445317
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN-----IDLLLIDDMQFLQG 273 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~-----~DvLliDDiqfl~g 273 (502)
..+||.+|.|||-|..|++|..... .+-+... +++.-.-.....-.|+-||- -.+..||.|.-+..
T Consensus 222 VIlyG~PGTGKTLLAKAVANqTSAT-----FlRvvGs----eLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGt 292 (440)
T KOG0726 222 VILYGEPGTGKTLLAKAVANQTSAT-----FLRVVGS----ELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT 292 (440)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCHH-----HHHHHHH----HHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCC
T ss_conf 5886799975368888772455212-----4556508----999987365519999999888752982698640011045
Q ss_pred C----------CHHH---HHHHHHHHHHHCCC-EEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 5----------0699---99999999885698-79996487567613630345765302115775158889999999999
Q gi|254780627|r 274 K----------LIQH---EFCHLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 (502)
Q Consensus 274 k----------~tqe---e~f~~~n~l~~~gk-qiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k 339 (502)
| ..|. ||++-++-+-.+|- .+|++..+ +..|++-|+--=.----.+...||..|+.+|++-
T Consensus 293 KRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnr----ie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~I- 367 (440)
T KOG0726 293 KRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNR----IETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQI- 367 (440)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC----CCCCCHHHCCCCCCCCCCCCCCCCHHHHCEEEEE-
T ss_conf 21347885078999999999874268665677589974165----3446775527875431112579755632315687-
Q ss_pred HHHHHHHCCCCCCCHHH
Q ss_conf 98864311689789899
Q gi|254780627|r 340 LAISQKEDPKLNINEEV 356 (502)
Q Consensus 340 ~~~~~~~~~~~~l~~~v 356 (502)
+--++.|.++|
T Consensus 368 ------HTs~Mtl~~dV 378 (440)
T KOG0726 368 ------HTSRMTLAEDV 378 (440)
T ss_pred ------EECCCCCCCCC
T ss_conf ------50243001246
No 192
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=96.81 E-value=0.049 Score=34.50 Aligned_cols=176 Identities=11% Similarity=0.057 Sum_probs=90.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-----HCCCCCEEEEEHHHHHHHHHHHH------HCCCHHHHHHH------HH--
Q ss_conf 4898627888857999999999986-----30688168646988899999998------61988999999------74--
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIK-----RQPNLRVVYLTAEYFMWRFASAI------RDNCALNLKDS------LR-- 258 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~-----~~~~~~v~y~~~e~F~~~~~~a~------~~~~~~~fr~~------~r-- 258 (502)
=|++.||+|.|||-.++.++.++-= .+|.. ...++|..++-... ..-..++|.+. |-
T Consensus 47 iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~----~~~~~~~~q~~d~~g~~~~~~~S~~~~F~eFLlr~~ky~sL 122 (490)
T pfam03215 47 ILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEY----LHNPDNECQKPDFRGDCIVNSLSQMEQFREFLLRGARYGSL 122 (490)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCC----CCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 89987989988999999999975968998148654----56775022101212345766663777767887622335654
Q ss_pred -----HCCHHHHHHHHHHCCCCHHHHHHHHHHHH-HHCCC-E-EEEECCC-CH-HHH----CCC-CHHH----HHHHHCC
Q ss_conf -----03102054444531750699999999998-85698-7-9996487-56-761----363-0345----7653021
Q gi|254780627|r 259 -----NIDLLLIDDMQFLQGKLIQHEFCHLLNSL-LDSAK-Q-VVAAADR-PP-SEL----ESL-DPRI----RSRLQGG 319 (502)
Q Consensus 259 -----~~DvLliDDiqfl~gk~tqee~f~~~n~l-~~~gk-q-iv~tsd~-~P-~~l----~~l-~~rL----~SR~~~G 319 (502)
+--++||||+-..... ....|...+-.. ...|. . |++.|+. .+ .+- ..+ ..|| +..--+=
T Consensus 123 ~~~~~~kriILIEE~Pn~~~~-d~~~fr~~L~~~L~s~~~~PlV~IiSEt~s~~g~~~~~~~~~ta~rLlg~eIl~hp~i 201 (490)
T pfam03215 123 QGGGLKKKLILVEELPNQFYS-DAEKFREVIREVLQSIWHLPLIFCLTECNSLEGDNNQDRFGIDAETIMTKDILIMPRI 201 (490)
T ss_pred CCCCCCCEEEEEECCCCCCCC-CHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHCCHHHHHCCCC
T ss_conf 457887359999658874423-6699999999999708999879999704666677643323210786359888708896
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 1577515888999999999998864311689789899999985027888999999999999863
Q gi|254780627|r 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 (502)
Q Consensus 320 l~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~ 383 (502)
-+++.+|..--...+.|.+-+... + ..........++.||+...|+||- |+|.|-+.+.
T Consensus 202 ~~I~FNpIApT~M~KaL~~I~~kE-~-~~~~~~~~~~le~Ia~~S~GDIRs---AInsLQF~~~ 260 (490)
T pfam03215 202 DTITFNPIAPTFMKKALVRISVQE-G-KLKSPKSDSKLEVICQEAGGDLRS---AINSLQFSSS 260 (490)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHH-C-CCCCCCCHHHHHHHHHHCCCCHHH---HHHHHHHHCC
T ss_conf 369868887889999999999985-7-655675203899999864872999---9999998626
No 193
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ; InterPro: IPR013364 Proteins in this entry are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase (IPR013363 from INTERPRO) of a type-IV secretion-like system of the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii..
Probab=96.80 E-value=0.00082 Score=47.10 Aligned_cols=71 Identities=21% Similarity=0.293 Sum_probs=46.5
Q ss_pred HHHCCCCCHHHHHHHH--HHHHHCCCCCCC-----------CCCCCEE-EEECCCCCCHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 7632886147899999--999824100136-----------5555548-9862788885799999999998630688168
Q gi|254780627|r 165 STFIEGSSNRVALTAA--QSIAEVDSHGYT-----------TVRLNPL-FIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 (502)
Q Consensus 165 DnFVVG~sN~lA~aAA--kaVAe~pg~~~~-----------~~~~NPL-fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~ 230 (502)
-|||.+.+-++--|.| ++|..+.=+.-. -.+.|=| ||||.+|.||+-|+-||-.++.+.+|+.||+
T Consensus 104 ~nf~QAt~~~~~~AislTlRvips~IP~L~~MgiE~DLf~alLP~~GLGLiCG~TGSGKSTl~AaiY~~~l~t~pdRKiv 183 (374)
T TIGR02525 104 CNFIQATIGKLETAISLTLRVIPSDIPDLKKMGIEPDLFEALLPKAGLGLICGETGSGKSTLAAAIYRHCLETYPDRKIV 183 (374)
T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 10004415554444434420055666513234787689987050037802217789728999999999850748897079
Q ss_pred EEEHHHH
Q ss_conf 6469888
Q gi|254780627|r 231 YLTAEYF 237 (502)
Q Consensus 231 y~~~e~F 237 (502)
|-||=
T Consensus 184 --T~EDP 188 (374)
T TIGR02525 184 --TYEDP 188 (374)
T ss_pred --EEECC
T ss_conf --86577
No 194
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=96.78 E-value=0.014 Score=38.44 Aligned_cols=81 Identities=22% Similarity=0.287 Sum_probs=53.9
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHHHCCCCCEEEEEHHHHH-HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCH
Q ss_conf 89862788885799-99999999863068816864698889-99999986198899999974031020544445317506
Q gi|254780627|r 199 LFIHASVGLGKTHL-LQAIANASIKRQPNLRVVYLTAEYFM-WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI 276 (502)
Q Consensus 199 Lfi~G~~GlGKTHL-l~ai~~~~~~~~~~~~v~y~~~e~F~-~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~t 276 (502)
.-|||+++.|||.| ||+|++ ..+ .+..++|+.+|.-+ .+|..++. +|+ |.+ ++.--.+
T Consensus 55 ~ei~G~essGKTtlal~~ia~-aQk--~gg~~~~iD~E~a~d~~~a~~lG-------------VD~---~~l-~~~qpd~ 114 (322)
T pfam00154 55 IEIYGPESSGKTTLALHAIAE-AQK--AGGTAAFIDAEHALDPVYAKKLG-------------VDI---DNL-LVSQPDT 114 (322)
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHH--CCCEEEEEEHHHHCCHHHHHHCC-------------CCH---HHE-EEECCCH
T ss_conf 999889877789999999999-973--49938998536605988999809-------------880---253-8977883
Q ss_pred HHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 99999999998856987999648
Q gi|254780627|r 277 QHEFCHLLNSLLDSAKQVVAAAD 299 (502)
Q Consensus 277 qee~f~~~n~l~~~gkqiv~tsd 299 (502)
-|+.+.+++.|...|..-++.-|
T Consensus 115 ~Eqal~i~~~li~~~~~~liViD 137 (322)
T pfam00154 115 GEQALEIADMLVRSGAVDLIVVD 137 (322)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 99999999998537997659982
No 195
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=96.77 E-value=0.011 Score=39.10 Aligned_cols=122 Identities=25% Similarity=0.324 Sum_probs=67.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHC-------------CCCCEEE----E-EHHH--HHH-HHHHHHHCC----CH---
Q ss_conf 89862788885799999999998630-------------6881686----4-6988--899-999998619----88---
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQ-------------PNLRVVY----L-TAEY--FMW-RFASAIRDN----CA--- 250 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~-------------~~~~v~y----~-~~e~--F~~-~~~~a~~~~----~~--- 250 (502)
+||-|++|.|||.|++-+...+.+.. .+.++-| + +.++ |.. +.....+-+ ++
T Consensus 2 i~ITG~pGvGKTTli~kv~~~l~~~~~~v~GF~T~evre~g~R~GF~iv~l~~g~~~~la~~~~~~~~~vGky~v~~~~f 81 (168)
T pfam03266 2 IFITGPPGVGKTTLVKKVIELLKSEGVKVGGFYTPEVREGGRRIGFDIVDLASGERGPLARVGGVSGPRVGKYVVNLEEF 81 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCEECCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEECHHHH
T ss_conf 89978999889999999999998679707489930212589378999999047826774440688775457716668999
Q ss_pred -----HHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEEC
Q ss_conf -----999999740310205444453175069999999999885698799964875676136303457653021157751
Q gi|254780627|r 251 -----LNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 (502)
Q Consensus 251 -----~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~ 325 (502)
+.+++...++|+++||-|=.+.- ....|...+..+.+.++.++.|--+. +.. .+=+++..|= .+-+.++.
T Consensus 82 e~~~~~~L~~a~~~~dlivIDEIG~mEl--~s~~F~~~v~~~l~~~~~vl~ti~~~-~~~-~~v~~i~~~~-d~~i~~vt 156 (168)
T pfam03266 82 EEIALPALRRALEEADLIIIDEIGPMEL--KSPKFREAIEEVLSSNKPVLAVVHRR-SDS-PLVERIRRRP-DVKIFVVT 156 (168)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCHHHH--HHHHHHHHHHHHHCCCCCEEEEEEEC-CCC-HHHHHHHCCC-CCEEEEEC
T ss_conf 9999999984066898999976314533--14999999999966999799999725-898-3899974179-93899978
No 196
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76 E-value=0.0093 Score=39.63 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=75.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH-------HHHHHHHH-----CCCHHHH---HHHHHH---C
Q ss_conf 8986278888579999999999863068816864698889-------99999986-----1988999---999740---3
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM-------WRFASAIR-----DNCALNL---KDSLRN---I 260 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~-------~~~~~a~~-----~~~~~~f---r~~~r~---~ 260 (502)
.=+-||+|+|||-=+.-++..+... +.+|-.+|.+.|- ..|..-+. ..+..++ -..|++ |
T Consensus 244 IALVGPTGVGKTTTIAKLAArf~~~--~KkVALITtDTYRIGAVEQLKTYAeIMgVPV~VV~dp~eL~~AL~~lkdka~~ 321 (436)
T PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321 (436)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 9998999988899999999998616--98089998066347699999999998499439968889999999987633688
Q ss_pred CHHHHHHHHHHCCC----C-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHH
Q ss_conf 10205444453175----0-699999999998856987999648756761363034576
Q gi|254780627|r 261 DLLLIDDMQFLQGK----L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 (502)
Q Consensus 261 DvLliDDiqfl~gk----~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~S 314 (502)
|+.|||- +|+ . ..+|+...+.........+|+++...+.++..+-+|...
T Consensus 322 DLILIDT----AGRS~RD~~~I~EL~~~l~~~~p~ev~LVLSATTK~~DL~eIi~rF~~ 376 (436)
T PRK11889 322 DYILIDT----AGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD 376 (436)
T ss_pred CEEEEEC----CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCC
T ss_conf 8899929----898846899999999998512777169999788998999999997257
No 197
>PTZ00243 ABC transporter; Provisional
Probab=96.73 E-value=0.0059 Score=41.03 Aligned_cols=100 Identities=17% Similarity=0.207 Sum_probs=62.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCC----CCCEEEEEHHHH--------------------HHHHHHHH---------
Q ss_conf 898627888857999999999986306----881686469888--------------------99999998---------
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQP----NLRVVYLTAEYF--------------------MWRFASAI--------- 245 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~----~~~v~y~~~e~F--------------------~~~~~~a~--------- 245 (502)
.-|.|++|.|||-||+||-.|+..... ..+|.|++-+-+ .++.+.|-
T Consensus 689 ~~IvG~vGSGKSSLL~aiLGE~~~~~G~v~~~g~iAYv~Q~pWi~n~TiReNILFg~~~d~~rY~~Vi~aCaL~~Dl~~L 768 (1560)
T PTZ00243 689 TVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQL 768 (1560)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCHHCCCCHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHC
T ss_conf 99989999879999999968884356389974708975784440587399981088610499999999996788889856
Q ss_pred HCC------------------CHHHHHHHHHHCCHHHHHHHHHHCC-C-CHHHHHH-HHHHHHHHCCCEEEEECCCC
Q ss_conf 619------------------8899999974031020544445317-5-0699999-99999885698799964875
Q gi|254780627|r 246 RDN------------------CALNLKDSLRNIDLLLIDDMQFLQG-K-LIQHEFC-HLLNSLLDSAKQVVAAADRP 301 (502)
Q Consensus 246 ~~~------------------~~~~fr~~~r~~DvLliDDiqfl~g-k-~tqee~f-~~~n~l~~~gkqiv~tsd~~ 301 (502)
-+| .+.--|.-|++.|++|+||. |+. . .+.+.+| +.|+.+. .||.+|+.+-+.
T Consensus 769 P~GD~TeIGErGinLSGGQKQRIALARAvYsdadIyLLDDp--LSALDahV~~~If~~~I~g~L-kgKT~ILVTH~l 842 (1560)
T PTZ00243 769 GGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDP--LSALDAHVGERVVEECFLGAL-AGKTRVLATHQV 842 (1560)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC--CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCH
T ss_conf 89776630567635771378999999987426775752285--433456779999999988886-799699996857
No 198
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.021 Score=37.12 Aligned_cols=98 Identities=24% Similarity=0.328 Sum_probs=70.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH-HHHHHC------------CCHHHHHHHH--HHCCHH
Q ss_conf 8986278888579999999999863068816864698889999-999861------------9889999997--403102
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF-ASAIRD------------NCALNLKDSL--RNIDLL 263 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~-~~a~~~------------~~~~~fr~~~--r~~DvL 263 (502)
..|-|.+|.||+-||--++..+.++. +|+|+|.|+=..+. ..|-|- -+++.+.+.. +..|++
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lv 172 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLV 172 (456)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCC---CEEEEECCCCHHHHHHHHHHHCCCCCCEEEEHHCCHHHHHHHHHHCCCCEE
T ss_conf 99736898779899999999987059---579996776789999999982899645577411289999999985499789
Q ss_pred HHHHHHHHC--------CCCHH--HHHHHHHHHHHHCCCEEEEECC
Q ss_conf 054444531--------75069--9999999998856987999648
Q gi|254780627|r 264 LIDDMQFLQ--------GKLIQ--HEFCHLLNSLLDSAKQVVAAAD 299 (502)
Q Consensus 264 liDDiqfl~--------gk~tq--ee~f~~~n~l~~~gkqiv~tsd 299 (502)
+||-||-+- |-=+| |--..+...-...|..+++.+-
T Consensus 173 VIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGH 218 (456)
T COG1066 173 VIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGH 218 (456)
T ss_pred EEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 9965412302633579985899999999999999875973999988
No 199
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.65 E-value=0.0032 Score=42.91 Aligned_cols=105 Identities=19% Similarity=0.136 Sum_probs=68.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCC-----------------CCEEEEEHHHHH--HHHH----HHHHCCCHHHHHH
Q ss_conf 8986278888579999999999863068-----------------816864698889--9999----9986198899999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPN-----------------LRVVYLTAEYFM--WRFA----SAIRDNCALNLKD 255 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~-----------------~~v~y~~~e~F~--~~~~----~a~~~~~~~~fr~ 255 (502)
.-|.|++|.|||-|++.+...+...... ..|-|+.-+.+. .... +.=+...+.--|.
T Consensus 31 vaIvG~sGsGKSTLl~ll~gl~~p~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~eNiLSGGQkQRvalARa 110 (173)
T cd03246 31 LAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLARA 110 (173)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCEECCCCHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999809999999966666799989999999332899898420899908883677758997676999999999999
Q ss_pred HHHHCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHC
Q ss_conf 9740310205444453175--06999999999988569879996487567613
Q gi|254780627|r 256 SLRNIDLLLIDDMQFLQGK--LIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 (502)
Q Consensus 256 ~~r~~DvLliDDiqfl~gk--~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~ 306 (502)
-|++.++|++|+ -.++= .+...++..+..+...|+.+|+.+-+ |..+.
T Consensus 111 l~~~p~ililDE--pts~LD~~~e~~i~~~l~~l~~~~~Tvi~vtH~-~~~~~ 160 (173)
T cd03246 111 LYGNPRILVLDE--PNSHLDVEGERALNQAIAALKAAGATRIVIAHR-PETLA 160 (173)
T ss_pred HHCCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC-HHHHH
T ss_conf 827999999968--766899899999999999786489899998479-99998
No 200
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=96.65 E-value=0.0096 Score=39.53 Aligned_cols=104 Identities=20% Similarity=0.267 Sum_probs=66.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH-------HHHHHHHHC--------CCHHH-HHH-----
Q ss_conf 548986278888579999999999863068816864698889-------999999861--------98899-999-----
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM-------WRFASAIRD--------NCALN-LKD----- 255 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~-------~~~~~a~~~--------~~~~~-fr~----- 255 (502)
+...+-|++|+|||--+-=++..+.++ +.+|..++++.|- ..|..-+.- .+..+ .++
T Consensus 2 ~vi~lvGptGvGKTTTiaKLAa~~~~~--~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~ 79 (196)
T pfam00448 2 NVILLVGLQGSGKTTTIAKLAAYLKKQ--GKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKA 79 (196)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699998999998899999999999977--992899975877688999999999863981781487778789999999998
Q ss_pred HHHHCCHHHHHHHHHHCCC----C-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHC
Q ss_conf 9740310205444453175----0-6999999999988569879996487567613
Q gi|254780627|r 256 SLRNIDLLLIDDMQFLQGK----L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 (502)
Q Consensus 256 ~~r~~DvLliDDiqfl~gk----~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~ 306 (502)
+-+++|++|||- +|+ . ..+|+-.+++........+|+.+...+.++.
T Consensus 80 ~~~~~D~IlIDT----aGr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~ 131 (196)
T pfam00448 80 KAENYDVVLVDT----AGRLQNDKNLMDELKKIKRVIAPDEVLLVLDATTGQNALN 131 (196)
T ss_pred HHCCCCEEEEEC----CCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH
T ss_conf 846899999989----9987476778999999985228730289985677821378
No 201
>KOG0743 consensus
Probab=96.64 E-value=0.019 Score=37.39 Aligned_cols=134 Identities=18% Similarity=0.290 Sum_probs=74.6
Q ss_pred HHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHH---
Q ss_conf 99982410013655555489862788885799999999998630688168646988899999998619889999997---
Q gi|254780627|r 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL--- 257 (502)
Q Consensus 181 kaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~--- 257 (502)
+.--..-|++|-. . -++|||+|.|||-+..||||++.=. |+-+.- .+++.+ .+.|.-.
T Consensus 224 k~~YkrvGkawKR-G---YLLYGPPGTGKSS~IaAmAn~L~yd-----IydLeL--------t~v~~n--~dLr~LL~~t 284 (457)
T KOG0743 224 KDFYKRVGKAWKR-G---YLLYGPPGTGKSSFIAAMANYLNYD-----IYDLEL--------TEVKLD--SDLRHLLLAT 284 (457)
T ss_pred CHHHHHCCCCCCC-C---CEEECCCCCCHHHHHHHHHHHCCCC-----EEEEEE--------CCCCCC--HHHHHHHHHC
T ss_conf 3578864845000-4---1204799998889999997205873-----677440--------023683--8999999728
Q ss_pred HHCCHHHHHHHHHH-C--CCC--------------HHHHHHHHHHHHHHCC---CEEEEECCCCHHHHCCCCHHHHHHHH
Q ss_conf 40310205444453-1--750--------------6999999999988569---87999648756761363034576530
Q gi|254780627|r 258 RNIDLLLIDDMQFL-Q--GKL--------------IQHEFCHLLNSLLDSA---KQVVAAADRPPSELESLDPRIRSRLQ 317 (502)
Q Consensus 258 r~~DvLliDDiqfl-~--gk~--------------tqee~f~~~n~l~~~g---kqiv~tsd~~P~~l~~l~~rL~SR~~ 317 (502)
.+--+|+|.||.-= . ++. |---|++-+|-+-.+. +-||||... + ..||+-|+-+=-
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh-~---EkLDPALlRpGR 360 (457)
T KOG0743 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNH-K---EKLDPALLRPGR 360 (457)
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCCEEEEEECCC-H---HHCCHHHCCCCC
T ss_conf 997189996124323044345556645467766066477566413430048873499994687-1---006886628875
Q ss_pred CCEEEEECCCCHHHHHHHHH
Q ss_conf 21157751588899999999
Q gi|254780627|r 318 GGVSVPLGLHDYEMRFSILK 337 (502)
Q Consensus 318 ~Gl~~~i~~Pd~e~r~~Il~ 337 (502)
.-+-..+.--.++.-....+
T Consensus 361 mDmhI~mgyCtf~~fK~La~ 380 (457)
T KOG0743 361 MDMHIYMGYCTFEAFKTLAS 380 (457)
T ss_pred CEEEEECCCCCHHHHHHHHH
T ss_conf 22566726698799999999
No 202
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.64 E-value=0.011 Score=39.12 Aligned_cols=98 Identities=24% Similarity=0.331 Sum_probs=64.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH-HHHHH------------CCCHHHHHHHH--HHCCHH
Q ss_conf 8986278888579999999999863068816864698889999-99986------------19889999997--403102
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF-ASAIR------------DNCALNLKDSL--RNIDLL 263 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~-~~a~~------------~~~~~~fr~~~--r~~DvL 263 (502)
..|-|.+|.||+-||--++..+.++ +.+|+|+|+|+=..+. ..|-| ..+++..-+.. ...|+|
T Consensus 85 vLlgGePGIGKSTLLLQia~~la~~--~~~vLYvSGEES~~QIk~RA~RLg~~~~~l~l~set~le~Il~~i~~~kP~~l 162 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDLV 162 (372)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCEE
T ss_conf 9982599886889999999999863--99389982456789999899985878877278843569999999997199889
Q ss_pred HHHHHHHHC--------CCCHH-HH-HHHHHHHHHHCCCEEEEEC
Q ss_conf 054444531--------75069-99-9999999885698799964
Q gi|254780627|r 264 LIDDMQFLQ--------GKLIQ-HE-FCHLLNSLLDSAKQVVAAA 298 (502)
Q Consensus 264 liDDiqfl~--------gk~tq-ee-~f~~~n~l~~~gkqiv~ts 298 (502)
+||-||-+. |--+| .| -..+...-...|-.+++.+
T Consensus 163 IIDSIQT~~~~~~~s~pGsvsQVReca~~L~~~AK~~~i~~~lVG 207 (372)
T cd01121 163 IIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVG 207 (372)
T ss_pred EEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 995622020377677998789999999999999986197399998
No 203
>KOG0741 consensus
Probab=96.62 E-value=0.051 Score=34.38 Aligned_cols=179 Identities=14% Similarity=0.222 Sum_probs=96.3
Q ss_pred HHHHHHCCC-------CCHHHHHHHHHHHHH--CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 788763288-------614789999999982--41001365555548986278888579999999999863068816864
Q gi|254780627|r 162 FVFSTFIEG-------SSNRVALTAAQSIAE--VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 (502)
Q Consensus 162 yTFDnFVVG-------~sN~lA~aAAkaVAe--~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~ 232 (502)
--|++|+.| +-|+.--....-|.. ++- .+..-.+.++|++|.|||-|..-||- ....|-. ..+
T Consensus 499 e~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~----~s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFv--Kii 570 (744)
T KOG0741 499 EDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSE----RSPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFV--KII 570 (744)
T ss_pred HHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHCCC----CCCCEEEEEECCCCCCHHHHHHHHHH--HCCCCEE--EEE
T ss_conf 999999857854516307788766889999863346----67635899866998876889999975--2799847--973
Q ss_pred EHHHHH--HHHHHHHHCCCHHHHHHHHHH-CCHHHHHHHHHHC-----CCCHHH----HHHHHHHHHHHCCCEEEEECCC
Q ss_conf 698889--999999861988999999740-3102054444531-----750699----9999999988569879996487
Q gi|254780627|r 233 TAEYFM--WRFASAIRDNCALNLKDSLRN-IDLLLIDDMQFLQ-----GKLIQH----EFCHLLNSLLDSAKQVVAAADR 300 (502)
Q Consensus 233 ~~e~F~--~~~~~a~~~~~~~~fr~~~r~-~DvLliDDiqfl~-----gk~tqe----e~f~~~n~l~~~gkqiv~tsd~ 300 (502)
|+|+.. +|......-+ .-|.+-|++ ..++++|||..|- |.+-.. -|.-.++..--.|+.+.+-+..
T Consensus 571 Spe~miG~sEsaKc~~i~--k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TT 648 (744)
T KOG0741 571 SPEDMIGLSESAKCAHIK--KIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTT 648 (744)
T ss_pred CHHHHCCCCHHHHHHHHH--HHHHHHHCCCCEEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf 778703746678899999--988876338650899815565620024684035799999999952489888459999624
Q ss_pred CHHH-HCCCCHHHHHHHHCCEEEEECCCCHH---HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
Q ss_conf 5676-13630345765302115775158889---999999999988643116897898999999850278
Q gi|254780627|r 301 PPSE-LESLDPRIRSRLQGGVSVPLGLHDYE---MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 (502)
Q Consensus 301 ~P~~-l~~l~~rL~SR~~~Gl~~~i~~Pd~e---~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~ 366 (502)
.-.+ |..+ .+.+-|.+- |.-|.+- --.++|+.- + .++++...-+++...+
T Consensus 649 S~~~vL~~m--~i~~~F~~~----i~Vpnl~~~~~~~~vl~~~---------n-~fsd~~~~~~~~~~~~ 702 (744)
T KOG0741 649 SRREVLQEM--GILDCFSST----IHVPNLTTGEQLLEVLEEL---------N-IFSDDEVRAIAEQLLS 702 (744)
T ss_pred CHHHHHHHC--CHHHHHHHE----EECCCCCCHHHHHHHHHHC---------C-CCCCCHHHHHHHHHHC
T ss_conf 079999972--778751110----5467568647899999971---------6-6784146789998742
No 204
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=96.62 E-value=0.0076 Score=40.25 Aligned_cols=98 Identities=17% Similarity=0.234 Sum_probs=62.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH-HHHHHHHHHHHHCCC----------HHHHHHH----HHHCCHH
Q ss_conf 898627888857999999999986306881686469-888999999986198----------8999999----7403102
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA-EYFMWRFASAIRDNC----------ALNLKDS----LRNIDLL 263 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~-e~F~~~~~~a~~~~~----------~~~fr~~----~r~~DvL 263 (502)
+||.|++|.|||=|+-.+-+++.....+....|++. ..|++-+-.++..+. +..|.+. ....||+
T Consensus 4 ~~V~G~pGtGKTvv~l~l~~~l~~~~~~~~~~~l~~N~~~~~~l~~~l~~~~~~~~~~~~~~~~~fi~~~~~~~~~~dvv 83 (348)
T pfam09848 4 FLVTGGPGTGKTVVALNLFAELSDSDLGRTAVFLSGNHPLVLVLYEALAGDLKVRKKKLFRKPTSFINNLHKAPPHEDVV 83 (348)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHCCCCCCCCCCCEE
T ss_conf 99977799389999999999986440268208995786699999999860412001020007252316523579867789
Q ss_pred HHHHHHHHCCCC------HHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 054444531750------699999999998856987999648
Q gi|254780627|r 264 LIDDMQFLQGKL------IQHEFCHLLNSLLDSAKQVVAAAD 299 (502)
Q Consensus 264 liDDiqfl~gk~------tqee~f~~~n~l~~~gkqiv~tsd 299 (502)
++|--|.+-.|. +.. +.+..++++.|-+|+-=|
T Consensus 84 ivDEAhRl~~k~~~~~~~~~~---~ql~~i~~~a~v~V~~~D 122 (348)
T pfam09848 84 IVDEAHRLWTKSDLYFNFSGP---NQLDEIMKRAKVVVFFID 122 (348)
T ss_pred EEEHHHHHHHCCCCCCCCCCH---HHHHHHHHHCCEEEEEEC
T ss_conf 983178665433655677857---999999975285999987
No 205
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.60 E-value=0.028 Score=36.20 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=70.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH------------CCCHHHHHHHH--HHCCHHH
Q ss_conf 898627888857999999999986306881686469888999999986------------19889999997--4031020
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR------------DNCALNLKDSL--RNIDLLL 264 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~------------~~~~~~fr~~~--r~~DvLl 264 (502)
.++-||+|+|||-=+-=++..+.-++ +.+|..+|++.|-=-=+.-++ -.+..+|++-+ +++|+.|
T Consensus 226 i~lVGPTGVGKTTTiAKLAA~~~l~~-~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~~~~el~~al~~~~~DlIL 304 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHM-GKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELIL 304 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCEEE
T ss_conf 99989999888999999999999974-99279995266537799999999998599459951899999999856999999
Q ss_pred HHHHHHHCCC--C--HH-HHHHHHHHHHHH---CCCEEEEECCCCHHHHCCCCHHH
Q ss_conf 5444453175--0--69-999999999885---69879996487567613630345
Q gi|254780627|r 265 IDDMQFLQGK--L--IQ-HEFCHLLNSLLD---SAKQVVAAADRPPSELESLDPRI 312 (502)
Q Consensus 265 iDDiqfl~gk--~--tq-ee~f~~~n~l~~---~gkqiv~tsd~~P~~l~~l~~rL 312 (502)
||- +|+ + -+ +|+-..++.+.. -...+|+++-...++|..+-++.
T Consensus 305 IDT----AGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~~f 356 (432)
T PRK12724 305 IDT----AGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred EEC----CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf 929----9989789999999999998636678851799997889989999999984
No 206
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=96.58 E-value=0.01 Score=39.38 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=30.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHH----HHCCCCCEEEEEHHH-HHHH
Q ss_conf 9862788885799999999998----630688168646988-8999
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASI----KRQPNLRVVYLTAEY-FMWR 240 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~----~~~~~~~v~y~~~e~-F~~~ 240 (502)
=|||++|.|||.|.+-++-.+. ....+.+|+|+.+|. |.-+
T Consensus 47 Ei~G~~gsGKTQlc~qlav~~qlp~~~gg~~g~vvyIDTEg~f~~e 92 (261)
T pfam08423 47 EVFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEGTFRPE 92 (261)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCHHHHCCCCCEEEEEECCCCCCHH
T ss_conf 9989988878999999999940709656999728999368886989
No 207
>KOG0739 consensus
Probab=96.57 E-value=0.047 Score=34.65 Aligned_cols=156 Identities=18% Similarity=0.245 Sum_probs=100.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHH-HHH-HHHHHCCHHHHHHHHHHC
Q ss_conf 555489862788885799999999998630688168646988899999998619889-999-997403102054444531
Q gi|254780627|r 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL-NLK-DSLRNIDLLLIDDMQFLQ 272 (502)
Q Consensus 195 ~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~-~fr-~~~r~~DvLliDDiqfl~ 272 (502)
.|--.++|||+|.||+-|..|++.+.- ...+-+++.+.++..+--. .+-+. -|- .+-..-.+..||.|.-+-
T Consensus 165 PwrgiLLyGPPGTGKSYLAKAVATEAn-----STFFSvSSSDLvSKWmGES-EkLVknLFemARe~kPSIIFiDEiDslc 238 (439)
T KOG0739 165 PWRGILLYGPPGTGKSYLAKAVATEAN-----STFFSVSSSDLVSKWMGES-EKLVKNLFEMARENKPSIIFIDEIDSLC 238 (439)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC-----CCEEEEEHHHHHHHHHCCH-HHHHHHHHHHHHHCCCCEEEEEHHHHHC
T ss_conf 542578867999757799999874147-----7068730178899873217-9999999999873499479863444432
Q ss_pred CCC----------HHHHHHHHHHH-HHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 750----------69999999999-8856987999648756761363034576530211577515888999999999998
Q gi|254780627|r 273 GKL----------IQHEFCHLLNS-LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 (502)
Q Consensus 273 gk~----------tqee~f~~~n~-l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~ 341 (502)
|.+ ...||+--.+- =.++.+-+|+.+..-|- .|+.-++-||+--+- |.-|+...|....+-
T Consensus 239 g~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw---~LDsAIRRRFekRIY--IPLPe~~AR~~MF~l--- 310 (439)
T KOG0739 239 GSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPW---VLDSAIRRRFEKRIY--IPLPEAHARARMFKL--- 310 (439)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCH---HHHHHHHHHHHCCEE--CCCCCHHHHHHHHEE---
T ss_conf 688777117777777788876406665888648972378843---677999987650230--108737876555032---
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHCCC
Q ss_conf 8643116897898999999850278
Q gi|254780627|r 342 ISQKEDPKLNINEEVLMHVARTVTT 366 (502)
Q Consensus 342 ~~~~~~~~~~l~~~v~~~la~~~~~ 366 (502)
+... -.-.|++.-..+||....+
T Consensus 311 -hlG~-tp~~LT~~d~~eL~~kTeG 333 (439)
T KOG0739 311 -HLGD-TPHVLTEQDFKELARKTEG 333 (439)
T ss_pred -CCCC-CCCCCCHHHHHHHHHHCCC
T ss_conf -0478-8641335669999764378
No 208
>PRK13695 putative NTPase; Provisional
Probab=96.57 E-value=0.0078 Score=40.16 Aligned_cols=116 Identities=28% Similarity=0.350 Sum_probs=69.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCE--EEE-----------------E-HH-------HHHHHH--------HH
Q ss_conf 8986278888579999999999863068816--864-----------------6-98-------889999--------99
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRV--VYL-----------------T-AE-------YFMWRF--------AS 243 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v--~y~-----------------~-~e-------~F~~~~--------~~ 243 (502)
.||-|++|.|||.|+.-+...+.+.. .++ +|. . .+ ++.+.. +.
T Consensus 6 I~iTG~PGvGKTTli~Kv~~~L~~~g--~~v~GF~T~Evre~G~R~GF~vv~l~~g~~~~lA~~~~~~~~~VgkY~V~~~ 83 (174)
T PRK13695 6 IGITGMPGVGKTTLVLKIAELLAREG--YKVGGFITEEVREGGKRIGFKIIDLDTGEEGILARVGAVSRPRVGKYVVNLE 83 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CEEEEEEEEEEECCCEEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEHH
T ss_conf 99878999889999999999986369--6174699525603882850599990588568767537889855456687168
Q ss_pred HHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEE
Q ss_conf 98619889999997403102054444531750699999999998856987999648756761363034576530211577
Q gi|254780627|r 244 AIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 (502)
Q Consensus 244 a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~ 323 (502)
.+-.-..+..++-+.++|+++||-|=.+.- ....|...+..+.+.+|.++.|=-+ | +-+++++| .+-+..
T Consensus 84 ~~e~~~~~~l~~a~~~~dlivIDEIG~MEl--~s~~F~~~V~~~L~s~kpvl~tih~-p-----~v~~ik~~--~~~v~~ 153 (174)
T PRK13695 84 DLERIAIPAISRALREADLIIIDEIGPMEL--KSKKFVSAVEEVLKSEKPVIATVHR-P-----VVQRIRSL--GGEVFW 153 (174)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCHHHH--HHHHHHHHHHHHHCCCCCEEEEECH-H-----HHHHHHCC--CCEEEE
T ss_conf 978998999983535787999963103311--0499999999997389989999775-8-----88986337--989999
Q ss_pred ECC
Q ss_conf 515
Q gi|254780627|r 324 LGL 326 (502)
Q Consensus 324 i~~ 326 (502)
+.+
T Consensus 154 vT~ 156 (174)
T PRK13695 154 LTP 156 (174)
T ss_pred ECH
T ss_conf 893
No 209
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.017 Score=37.80 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=79.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC------------------EEEEEHHHHHHH-HHHHHHCCCHHHHH---
Q ss_conf 54898627888857999999999986306881------------------686469888999-99998619889999---
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLR------------------VVYLTAEYFMWR-FASAIRDNCALNLK--- 254 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~------------------v~y~~~e~F~~~-~~~a~~~~~~~~fr--- 254 (502)
+-+.++|+.|+||+.|..+++..++-.++... +.++..|.=... -|+.+|+ +.+|-
T Consensus 26 HA~L~~g~~G~Gk~~la~~la~~LlC~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~pe~~~k~I~vd~IR~--l~~~~~~~ 103 (319)
T PRK06090 26 GALLLQSDEGLGVESLVELFSHALLCQNYQSEACGFCHSCELMKSGNHPDLHVIKPEKEGKSITVEQIRQ--CNRLAQES 103 (319)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHH--HHHHHHHC
T ss_conf 0676679998579999999999980899999988778779998758999823661233567687999999--99997545
Q ss_pred HHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHH
Q ss_conf 99740310205444453175069999999999885698799964875676136303457653021157751588899999
Q gi|254780627|r 255 DSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 (502)
Q Consensus 255 ~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~ 334 (502)
...-..-|.+||+.+.+. ..++.-|.-|+.+ -..+-..+++|+.+- .+.+-++||.. ...+.+|+.+.-..
T Consensus 104 ~~~g~~KV~iI~~ae~m~-~~AaNALLKtLEE-Pp~~t~fiL~t~~~~----~ll~TI~SRCq---~~~l~~p~~~~~~~ 174 (319)
T PRK06090 104 SQLGGYRLFVIEPADAMN-ESASNALLKTLEE-PAPNCLFLLVTHNQK----RLLPTIVSRCQ---QWVVTPPSTDQAMQ 174 (319)
T ss_pred CCCCCCEEEEECCHHHCC-HHHHHHHHHHHCC-CCCCEEEEEEECCHH----HCCCCHHHCCC---CCCCCCCCHHHHHH
T ss_conf 210693699981444349-9999999998428-998838998768512----08641876144---50289959999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780627|r 335 ILKNR 339 (502)
Q Consensus 335 Il~~k 339 (502)
-|+..
T Consensus 175 WL~~q 179 (319)
T PRK06090 175 WLKGQ 179 (319)
T ss_pred HHHHH
T ss_conf 99884
No 210
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.51 E-value=0.012 Score=38.73 Aligned_cols=110 Identities=15% Similarity=0.199 Sum_probs=58.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH--------HCCCCCEEEEEHHHHHHHH-HHHHH-CCCH-----------HHHHHHH
Q ss_conf 898627888857999999999986--------3068816864698889999-99986-1988-----------9999997
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIK--------RQPNLRVVYLTAEYFMWRF-ASAIR-DNCA-----------LNLKDSL 257 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~--------~~~~~~v~y~~~e~F~~~~-~~a~~-~~~~-----------~~fr~~~ 257 (502)
+.|-|++|.|||-|+.++...... ..+...++|+..-.+..++ ...+. +..+ .--|.-+
T Consensus 24 ~~iiG~nGsGKSTLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~LSGGqkQRvaiAraL~ 103 (176)
T cd03238 24 VVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELF 103 (176)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCHHHCCHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999989999998887610311203210137553688577999997488667789916868999999999999998
Q ss_pred HHCC--HHHHHHHHHHCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHH
Q ss_conf 4031--0205444453175--06999999999988569879996487567613630345
Q gi|254780627|r 258 RNID--LLLIDDMQFLQGK--LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 (502)
Q Consensus 258 r~~D--vLliDDiqfl~gk--~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL 312 (502)
.+.+ +|++|.- .+|= .+.++++..+..|.+.|+.||+.+-. +..+. .-||+
T Consensus 104 ~~p~~~ililDEP--tsgLD~~~~~~l~~~l~~l~~~g~TvI~vtHd-~~~~~-~aDri 158 (176)
T cd03238 104 SEPPGTLFILDEP--STGLHQQDINQLLEVIKGLIDLGNTVILIEHN-LDVLS-SADWI 158 (176)
T ss_pred HCCCCCEEEECCC--CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-HHHHH-HCCEE
T ss_conf 6899868997177--44589879999999999999879989999478-79998-39999
No 211
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.50 E-value=0.02 Score=37.22 Aligned_cols=132 Identities=17% Similarity=0.155 Sum_probs=78.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC-------------------EEEEEHHHHHHHHHHHHHCCCHHHHHH--
Q ss_conf 54898627888857999999999986306881-------------------686469888999999986198899999--
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLR-------------------VVYLTAEYFMWRFASAIRDNCALNLKD-- 255 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~-------------------v~y~~~e~F~~~~~~a~~~~~~~~fr~-- 255 (502)
.-+.+.|+.|+||+.|..+++..++-.+|+.. +.++..++=.+-=|+.+|. +.+|-.
T Consensus 24 HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~~~~~k~I~vd~IR~--l~~~~~~~ 101 (324)
T PRK06871 24 HALLFKADSGLGTEQLIRALAQWLMCQAPGDEQPCGQCHSCHLFQAGNHPDFHILEPIDGKDIGVDQVRE--INEKVSQF 101 (324)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHH--HHHHHHHC
T ss_conf 3787689999789999999999982899999998888989999973899987998467888788999999--99998646
Q ss_pred -HHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHH
Q ss_conf -9740310205444453175069999999999885698799964875676136303457653021157751588899999
Q gi|254780627|r 256 -SLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 (502)
Q Consensus 256 -~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~ 334 (502)
..-..-|.+||+.+.+. ..+++-|+-|+.+=- .+-.+++.++.+- .+-+-++||.. ...+.+|+.+.-..
T Consensus 102 ~~~g~~KV~iI~~ae~m~-~~AaNALLKtLEEPp-~~~~fiL~t~~~~----~ll~TI~SRCq---~~~~~~p~~~~~~~ 172 (324)
T PRK06871 102 AQQGGNKVVYIQGAERLT-EAAANALLKTLEEPR-PNTYFLLQADLSA----SLLATIYSRCQ---TWLIHVPEEQIALD 172 (324)
T ss_pred CCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCC-CCEEEEEEECCCC----CCCCHHHHCCC---CEECCCCCHHHHHH
T ss_conf 220596699975888857-999999999833898-7838999878701----03240862661---20089949999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780627|r 335 ILKNR 339 (502)
Q Consensus 335 Il~~k 339 (502)
.|+..
T Consensus 173 wL~~~ 177 (324)
T PRK06871 173 WLQAQ 177 (324)
T ss_pred HHHHH
T ss_conf 99974
No 212
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.50 E-value=0.022 Score=36.93 Aligned_cols=132 Identities=20% Similarity=0.224 Sum_probs=81.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-------------------CEEEEEHHHHHHHH-HHHHHCCCHHHH---
Q ss_conf 5489862788885799999999998630688-------------------16864698889999-999861988999---
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNL-------------------RVVYLTAEYFMWRF-ASAIRDNCALNL--- 253 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~-------------------~v~y~~~e~F~~~~-~~a~~~~~~~~f--- 253 (502)
.-+.+.|+.|+||.-|..+++..+.-.+|.. -+.++..|+-.... |+.+|+ +.+|
T Consensus 25 HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~~C~l~~~~~HPD~~~i~pe~~~~~I~IdqIR~--l~~~~~~ 102 (334)
T PRK07993 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVRE--VTEKLYE 102 (334)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHH--HHHHHHH
T ss_conf 46754799998899999999999818999999999999789998668999847753422345599999999--9999843
Q ss_pred HHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHH
Q ss_conf 99974031020544445317506999999999988569879996487567613630345765302115775158889999
Q gi|254780627|r 254 KDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 (502)
Q Consensus 254 r~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~ 333 (502)
+...-..-|.+|||.+-+. ..+++-|+-|+.+ -..+-.+|+.++.+- .|-+-++||.. ...+.+|+.+.-.
T Consensus 103 ~~~~g~~kV~iI~~Ae~mn-~~AaNaLLKtLEE-Pp~~t~~iL~t~~~~----~lLpTI~SRCq---~~~~~~~~~~~~~ 173 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLT-DAAANALLKTLEE-PPEKTWFFLACREPA----RLLATLRSRCR---LHYLAPPPEQYAL 173 (334)
T ss_pred CCCCCCCEEEEECCHHHHC-HHHHHHHHHHHCC-CCCCEEEEEECCCHH----HCCCHHHHHCC---CCCCCCCCHHHHH
T ss_conf 6656994799976677759-9999999986127-998849998669856----57238875230---4158997999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780627|r 334 SILKNR 339 (502)
Q Consensus 334 ~Il~~k 339 (502)
..|++.
T Consensus 174 ~wL~~~ 179 (334)
T PRK07993 174 TWLSRE 179 (334)
T ss_pred HHHHHH
T ss_conf 999873
No 213
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.49 E-value=0.043 Score=34.92 Aligned_cols=125 Identities=19% Similarity=0.265 Sum_probs=77.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH---------------------HCCCCCEEEEEHHHHHHH-HHHHHHCCCHHHHHHH
Q ss_conf 898627888857999999999986---------------------306881686469888999-9999861988999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIK---------------------RQPNLRVVYLTAEYFMWR-FASAIRDNCALNLKDS 256 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~---------------------~~~~~~v~y~~~e~F~~~-~~~a~~~~~~~~fr~~ 256 (502)
+.++|+.|+||+-|..+.+..+.= .||+ +.++..|+-... -|+.+| +..++
T Consensus 25 ~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~~~HPD--~~~i~pe~~~~~I~IdqIR-----~l~~~ 97 (328)
T PRK05707 25 YLLHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKGCQLLAAGSHPD--NFVLEPEEADKPIKVDQVR-----ELVSF 97 (328)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCC--EEEEECCCCCCCCCHHHHH-----HHHHH
T ss_conf 6447999867999999999998489999989998888999987589998--7998426667769799999-----99999
Q ss_pred -----H-HHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHH
Q ss_conf -----7-4031020544445317506999999999988569879996487567613630345765302115775158889
Q gi|254780627|r 257 -----L-RNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 (502)
Q Consensus 257 -----~-r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e 330 (502)
+ -..-|.+||+.+-+. ..+++-|+-|+.+= -.+-.+|+.++.+- .+-+-++||.. .+.+.+|+.+
T Consensus 98 ~~~~~~~g~~KV~iI~~Ae~m~-~~AaNALLKtLEEP-p~~t~fiL~t~~~~----~lLpTI~SRCq---~~~~~~p~~e 168 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMN-RNAANALLKSLEEP-SGQTVLLLISHQPS----RLLPTIKSRCQ---QLACPLPSNE 168 (328)
T ss_pred HHHCCCCCCCEEEEEEHHHHHC-HHHHHHHHHHHHCC-CCCEEEEEEECCHH----HCHHHHHHCCE---EEECCCCCHH
T ss_conf 8317667895799950287738-99999999985078-98759998609934----48258874141---3348998999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780627|r 331 MRFSILKNR 339 (502)
Q Consensus 331 ~r~~Il~~k 339 (502)
.-...|+..
T Consensus 169 ~~~~~L~~~ 177 (328)
T PRK05707 169 PSLQWLQQA 177 (328)
T ss_pred HHHHHHHHH
T ss_conf 999999975
No 214
>PRK09354 recA recombinase A; Provisional
Probab=96.48 E-value=0.02 Score=37.32 Aligned_cols=98 Identities=24% Similarity=0.341 Sum_probs=61.6
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHHHCCCCCEEEEEHHH-HHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCH
Q ss_conf 89862788885799-999999998630688168646988-8999999986198899999974031020544445317506
Q gi|254780627|r 199 LFIHASVGLGKTHL-LQAIANASIKRQPNLRVVYLTAEY-FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI 276 (502)
Q Consensus 199 Lfi~G~~GlGKTHL-l~ai~~~~~~~~~~~~v~y~~~e~-F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~t 276 (502)
.=|||+.+.|||.| ||+|++ ..+. +..++|+.+|. |.-+|..++. +|+ |++ +++-..+
T Consensus 63 vEi~G~esSGKTtlal~~iae-aQk~--Gg~~a~iDaE~ald~~~a~~lG-------------Vd~---d~l-lv~qpd~ 122 (350)
T PRK09354 63 VEIYGPESSGKTTLALHAIAE-AQKA--GGTAAFIDAEHALDPVYAKKLG-------------VDI---DNL-LVSQPDT 122 (350)
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHHC--CCCEEEEEECCCCCHHHHHHCC-------------CCH---HHE-EEECCCH
T ss_conf 999889877799999999999-9975--9947999600027988999849-------------771---571-7856867
Q ss_pred HHHHHHHHHHHHHCCCE--EEEECC---CCHHHHC--------CCCHHHHHHH
Q ss_conf 99999999998856987--999648---7567613--------6303457653
Q gi|254780627|r 277 QHEFCHLLNSLLDSAKQ--VVAAAD---RPPSELE--------SLDPRIRSRL 316 (502)
Q Consensus 277 qee~f~~~n~l~~~gkq--iv~tsd---~~P~~l~--------~l~~rL~SR~ 316 (502)
-|+-+.+.+.|...|.. ||+-|- .|..|+. |+..||.|++
T Consensus 123 ~Eqal~i~e~Lvrsg~vd~IVvDSVaAL~pk~Eieg~mgd~~vG~qARlmSqa 175 (350)
T PRK09354 123 GEQALEIADALVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQA 175 (350)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999854884189982533457688873133542263899999999
No 215
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.48 E-value=0.051 Score=34.35 Aligned_cols=47 Identities=26% Similarity=0.376 Sum_probs=33.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH----HHHHHHHHHHH
Q ss_conf 8986278888579999999999863068816864698----88999999986
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE----YFMWRFASAIR 246 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e----~F~~~~~~a~~ 246 (502)
..|-|++|.|||.++..++..+..+. +.+|+|+|.| +-+..+++..-
T Consensus 16 ~vi~a~~g~GKS~~~~~la~~~a~~~-g~~V~~~SlEm~~~~~~~R~~s~~~ 66 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEMSKEQLLQRLLASES 66 (242)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 99996899999999999999999977-9959999333538899999999982
No 216
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.48 E-value=0.033 Score=35.74 Aligned_cols=45 Identities=27% Similarity=0.279 Sum_probs=29.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH-----HHHHHHHH
Q ss_conf 4898627888857999999999986306881686469-----88899999
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA-----EYFMWRFA 242 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~-----e~F~~~~~ 242 (502)
-++|.+++|.|||.-+...+.+...+....+++|+.. ++..+++.
T Consensus 26 ~~~i~~~tGsGKT~~~~~~~~~~~~~~~~~~~li~~P~~~l~~q~~~~~~ 75 (201)
T smart00487 26 DVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 88998999960999999999998633899759999085999999998860
No 217
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.47 E-value=0.035 Score=35.49 Aligned_cols=128 Identities=22% Similarity=0.297 Sum_probs=78.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH-----------------------------HHCCCCCEEEEEHHHHHHH--HHHHHH-
Q ss_conf 89862788885799999999998-----------------------------6306881686469888999--999986-
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASI-----------------------------KRQPNLRVVYLTAEYFMWR--FASAIR- 246 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~-----------------------------~~~~~~~v~y~~~e~F~~~--~~~a~~- 246 (502)
-||-|.-|+||+-||.||+--+- ...|. .-.++-||.|.|- +++-+.
T Consensus 40 T~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~-~g~FlRAEs~yn~as~~De~~~ 118 (233)
T COG3910 40 TFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPP-IGFFLRAESFYNVASYLDEADG 118 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC-CCEEEEHHHHHHHHHHHHHHHH
T ss_conf 899768986578899999965651455787675751143314687768875067887-5068744677779988876220
Q ss_pred --C---CC----------HHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHH
Q ss_conf --1---98----------89999997403102054444531750699999999998856987999648756761363034
Q gi|254780627|r 247 --D---NC----------ALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 (502)
Q Consensus 247 --~---~~----------~~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~r 311 (502)
+ ++ +.-|-++++.--+.++|.=.-=-.-.-|.||+-.++.|.+.|.|||++.-. |--|. ...-
T Consensus 119 e~~~~~~sLh~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHS-PiLlA-iP~A 196 (233)
T COG3910 119 EANYGGRSLHHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHS-PILLA-IPGA 196 (233)
T ss_pred HCCCCCCCHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-HHHEE-CCCC
T ss_conf 102577423554143189999999831584188568644478888999999999987367839998368-14200-7884
Q ss_pred HHHHHHCCEEEEECCCCHHHH
Q ss_conf 576530211577515888999
Q gi|254780627|r 312 IRSRLQGGVSVPLGLHDYEMR 332 (502)
Q Consensus 312 L~SR~~~Gl~~~i~~Pd~e~r 332 (502)
-+=+|..|- |++-|+|.-
T Consensus 197 ~I~~~~~~g---~~~~~fe~t 214 (233)
T COG3910 197 EIYEISESG---IEERDFEET 214 (233)
T ss_pred EEEEEECCC---CCCCCHHHH
T ss_conf 799980687---555564788
No 218
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.46 E-value=0.079 Score=33.01 Aligned_cols=98 Identities=14% Similarity=0.160 Sum_probs=45.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHC-----------C------------CHHHHHH
Q ss_conf 8986278888579999999999863068816864698889999999861-----------9------------8899999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD-----------N------------CALNLKD 255 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~-----------~------------~~~~fr~ 255 (502)
-.|-|++|.|||-|.-....+..++ +-+++|++-|+-...++.-.+. + ..++|-.
T Consensus 269 tLi~Gp~GtGKTtla~qFl~~~a~~--GE~~l~~~FeE~~~~l~~~a~~~G~dl~~~~~~G~l~i~~~~p~~~~~~e~~~ 346 (501)
T PRK09302 269 ILVSGATGTGKTLLVSKFAEAACRR--GERCLLFAFEESRAQLVRNATSWGIDLEEMERKGLLKIICARPESTGLEDHLQ 346 (501)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEEEECCHHHHHHHHHHCCCCHHHHHHCCCEEEEEECCCCCCHHHHHH
T ss_conf 9998899988899999999999865--99089999967999999999973998488874894799983700059899999
Q ss_pred HHH------HCCHHHHHHHHHHCC--C--CHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 974------031020544445317--5--069999999999885698799964
Q gi|254780627|r 256 SLR------NIDLLLIDDMQFLQG--K--LIQHEFCHLLNSLLDSAKQVVAAA 298 (502)
Q Consensus 256 ~~r------~~DvLliDDiqfl~g--k--~tqee~f~~~n~l~~~gkqiv~ts 298 (502)
+.+ .++.++||-+--+.. . ..+..++...+.|...|-..++|+
T Consensus 347 ~i~~~v~~~~~~rVvIDsls~~~~~~~~~~~r~~l~~L~~~Lk~~gvT~l~t~ 399 (501)
T PRK09302 347 IIKREIEEFKPSRVAVDPLSALARGGSLNEFRQFVIRLTDYLKQEEITGLFTN 399 (501)
T ss_pred HHHHHHHHCCCCEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99999997299899995806876526859999999999999976897899976
No 219
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.42 E-value=0.0049 Score=41.58 Aligned_cols=136 Identities=21% Similarity=0.229 Sum_probs=76.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHH-HHHHHHHHHHCCC---HH------------HHHH--------
Q ss_conf 9862788885799999999998630688168646988-8999999986198---89------------9999--------
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY-FMWRFASAIRDNC---AL------------NLKD-------- 255 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~-F~~~~~~a~~~~~---~~------------~fr~-------- 255 (502)
=||||+|.|||-+. |-..+..-..+++|+|+.+|- |.-|=+..+-... .+ +|.+
T Consensus 16 QiYGp~G~GKTn~c--~~~a~~a~~~Gk~v~YiDTEGGLS~ER~~q~~~~~~~D~e~~~~~~iv~~~~~f~eQ~~ai~~~ 93 (223)
T TIGR02237 16 QIYGPPGSGKTNIC--LILAVNAARQGKKVVYIDTEGGLSPERFKQIAEDRALDPERVLSNVIVFEVFDFDEQEVAIQKT 93 (223)
T ss_pred EEECCCCCCHHHHH--HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHCCEEEECCCCHHHHHHHHHHH
T ss_conf 98758998678999--9999999861895899962898328999998630588988884153552353567899999999
Q ss_pred --HH----HHCCHHHHHHHHHH-----CCCC-----HHHHHH---HHHHHHHHC-CCEEEEE------CCCC-HHHHCCC
Q ss_conf --97----40310205444453-----1750-----699999---999998856-9879996------4875-6761363
Q gi|254780627|r 256 --SL----RNIDLLLIDDMQFL-----QGKL-----IQHEFC---HLLNSLLDS-AKQVVAA------ADRP-PSELESL 308 (502)
Q Consensus 256 --~~----r~~DvLliDDiqfl-----~gk~-----tqee~f---~~~n~l~~~-gkqiv~t------sd~~-P~~l~~l 308 (502)
-. .++|+.++|=+=-| ++-. ..-||- .++-.|-.. +=.+|+| .|.- -..+.-+
T Consensus 94 ~~~~~~~G~~~~LvVvDs~t~~YRle~~~d~nk~~~~~~~l~~Ql~~Ll~lArk~~~AVviTNQvy~d~~~gG~~~~~P~ 173 (223)
T TIGR02237 94 SKLIDRDGDKADLVVVDSFTALYRLERSDDRNKQISLNRELARQLTLLLSLARKKDLAVVITNQVYTDVNNGGSETLRPL 173 (223)
T ss_pred HHHHHCCCCEEEEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCEEEEC
T ss_conf 99986068833148881533454202578602567999999999999999987649978997115886377973201003
Q ss_pred CHHHHHHHHCCEEEEECCC-CHHHHHHHHHH
Q ss_conf 0345765302115775158-88999999999
Q gi|254780627|r 309 DPRIRSRLQGGVSVPLGLH-DYEMRFSILKN 338 (502)
Q Consensus 309 ~~rL~SR~~~Gl~~~i~~P-d~e~r~~Il~~ 338 (502)
..++. +.-++.++.+++- +-+.|+++|.|
T Consensus 174 GG~~L-~h~~K~i~rLE~~~r~G~R~a~L~k 203 (223)
T TIGR02237 174 GGHLL-EHWSKVILRLEKLNRVGRRKATLEK 203 (223)
T ss_pred CCHHH-HHHHCEEEEEECCCCCCCEEEEEEE
T ss_conf 31134-3110213356447898742456654
No 220
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=96.38 E-value=0.09 Score=32.61 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=31.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCC---CCEEEEEHHHH
Q ss_conf 48986278888579999999999863068---81686469888
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPN---LRVVYLTAEYF 237 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~---~~v~y~~~e~F 237 (502)
.++|.|..|.|||.|++-++....+.... .-++|+..-++
T Consensus 2 ~i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~vf~~~~r~~ 44 (165)
T pfam05729 2 TVILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFFLPCREL 44 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHH
T ss_conf 8999827989899999999999986984369728999995670
No 221
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.34 E-value=0.014 Score=38.44 Aligned_cols=264 Identities=18% Similarity=0.195 Sum_probs=125.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCE------EEEEHHH-HHHHHHHHHHC-CCHHHHHH-HHHHCCHHHHHH
Q ss_conf 548986278888579999999999863068816------8646988-89999999861-98899999-974031020544
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRV------VYLTAEY-FMWRFASAIRD-NCALNLKD-SLRNIDLLLIDD 267 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v------~y~~~e~-F~~~~~~a~~~-~~~~~fr~-~~r~~DvLliDD 267 (502)
..+|++||+|.||+-|...+...+. +++. .|.+.|+ |.--=+.++++ +....--+ +.-++++.-+|.
T Consensus 40 ehvlllGPPGtAKS~larrl~~~~~----~a~~FeyLltRFstPeElFGP~si~~Lk~~g~y~R~t~G~LP~A~iaFLDE 115 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFAFQ----HARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDE 115 (498)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHC----CCHHHHHHHHCCCCHHHHCCCCCHHHHHHCCEEEEECCCCCCCCEEEHHHH
T ss_conf 9469888995138899999999855----740899998746988885383329987117848972267588661315787
Q ss_pred HHHHCCCCHHHHHHHHHHHHH-HCCCE--------EEEECCCCHHH---HCCCCHHHHHHHHCCEEEE-----------E
Q ss_conf 445317506999999999988-56987--------99964875676---1363034576530211577-----------5
Q gi|254780627|r 268 MQFLQGKLIQHEFCHLLNSLL-DSAKQ--------VVAAADRPPSE---LESLDPRIRSRLQGGVSVP-----------L 324 (502)
Q Consensus 268 iqfl~gk~tqee~f~~~n~l~-~~gkq--------iv~tsd~~P~~---l~~l~~rL~SR~~~Gl~~~-----------i 324 (502)
| |-+|....+.++.++|+.. .+|.. +|-+|.--|.+ |..|-||+.=|+.-+-+-+ -
T Consensus 116 I-fKansAILNtLLtilNEr~f~nG~~~~~vPL~~li~ASNElP~~~~~L~AlyDRfL~R~~v~~v~~~~nF~~lL~s~~ 194 (498)
T PRK13531 116 I-WKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLVSQQ 194 (498)
T ss_pred H-HHCCHHHHHHHHHHHHHHEECCCCCEECCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHCCCC
T ss_conf 8-614889999999986464034798313044688643046799998407888876441022313167667999861788
Q ss_pred CCCC--HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH---CC-------CCHHHHHHHHHHHHHHHHHCC-C-CCH
Q ss_conf 1588--89999999999988643116897898999999850---27-------888999999999999863024-6-877
Q gi|254780627|r 325 GLHD--YEMRFSILKNRLAISQKEDPKLNINEEVLMHVART---VT-------TSGRELDGAFNQLVFRHSFAP-I-LTA 390 (502)
Q Consensus 325 ~~Pd--~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~---~~-------~~vR~Legal~~l~~~~~~~~-~-~~~ 390 (502)
..+| ....+.|--.-......+-..+.+|+++.+.|..- +. -|=|...-++.=|.+.|-+++ . ++
T Consensus 195 ~~~~~~i~~~l~is~eE~~~wq~~i~~V~lpd~v~e~I~~lR~~l~~~e~~~YVSDRRWkKav~LLkasAf~~GR~eV~- 273 (498)
T PRK13531 195 DENDNPVPASLQVTDEEYEQWQKEIGKITLPDHVFELIFQLRQQLDALPDAPYVSDRRWKKAIRLLQASAFFSGRDAVA- 273 (498)
T ss_pred CCCCCCCCCCCEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCC-
T ss_conf 6444578855711799999999862021387999999999999985156787557668999999999987516955377-
Q ss_pred HHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCHHHCHHHHHHHHHHH---HHCCCCHHHHHHHHCC
Q ss_conf 88999998763037-8875798999999999809999994088877401445799999999---8515687899988479
Q gi|254780627|r 391 EIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK---IMTPRSFPEIGRRFGD 466 (502)
Q Consensus 391 ~~~~~~l~~~~~~~-~~~~i~~~~I~~~V~~~~~i~~~~l~s~~R~~~i~~~RqiamyL~r---~~t~~s~~~IG~~fg~ 466 (502)
...--+|++-+... +.+.+ +..+++.-+....-....+..+ +-..++--|-+.+ ..+..++..-|.+||.
T Consensus 274 ~~DllLL~hCLW~d~~s~~~-l~~~l~~~~~~~a~~Q~~~l~~-----~~~~~~~~~q~~q~~~~~~~~~~~~~~~mf~r 347 (498)
T PRK13531 274 PIDLILLKDCLWHDAQSLNL-LQQQLEVLMTGHAWQQQGMLTR-----LGAIVQRWLQLQQQQSDKTALTVIKQGGMFSR 347 (498)
T ss_pred HHHHHHHHCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHEEEECCCHHHCC
T ss_conf 98889986358798567899-9999999999988889999999-----99999999999999986654266301101046
Q ss_pred CCHHHH
Q ss_conf 843799
Q gi|254780627|r 467 RDHTTV 472 (502)
Q Consensus 467 rdHsTV 472 (502)
|-|=+.
T Consensus 348 k~~y~l 353 (498)
T PRK13531 348 RPQYQL 353 (498)
T ss_pred CCCCCC
T ss_conf 642126
No 222
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.33 E-value=0.11 Score=31.91 Aligned_cols=152 Identities=24% Similarity=0.289 Sum_probs=78.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHC--CCCCEEEEEHHHHHH------
Q ss_conf 288614789999999982410013655555489862788885799999999998630--688168646988899------
Q gi|254780627|r 168 IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ--PNLRVVYLTAEYFMW------ 239 (502)
Q Consensus 168 VVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~--~~~~v~y~~~e~F~~------ 239 (502)
|+|.. .|..|-.=.|-+||-. -+.|.|+.|.|||-|..+++.=+-... .++.+- ...-.++.
T Consensus 10 IvGQe--~~K~AL~laav~p~~g-------gvLi~G~~GtgKStlaR~l~~iLP~~~~~e~~~~~-~~~~~~~~~~~~~~ 79 (334)
T PRK13407 10 IVGQE--EMKQAMVLTAIDPGIG-------GVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVN-SARPEDCPEWAEVS 79 (334)
T ss_pred HCCCH--HHHHHHHHHHCCCCCC-------EEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCCC-CCCCCCCHHHHHCC
T ss_conf 64939--9999999977278986-------08997899865999999999728995110367556-67742113343114
Q ss_pred ---------------------------HHHHHHHCCCHHHHHH---HHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf ---------------------------9999986198899999---9740310205444453175069999999999885
Q gi|254780627|r 240 ---------------------------RFASAIRDNCALNLKD---SLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLD 289 (502)
Q Consensus 240 ---------------------------~~~~a~~~~~~~~fr~---~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~ 289 (502)
+.-.++..|. ..|+- .--+--||.+|+|-.|.. |+.|.|.+
T Consensus 80 ~~~~~~~~~p~v~lPl~atedr~~G~ldie~al~~G~-~~~~PGlLa~Ah~GVLylDEinll~~--------~vld~Ll~ 150 (334)
T PRK13407 80 STTMVERPTPVIDLPLGATEDRVVGALDIERALTRGE-KAFEPGLLARANRGYLYIDEVNLLED--------HIVDLLLD 150 (334)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC-CCCCCCHHHHCCCCEEEEECHHHCCH--------HHHHHHHH
T ss_conf 5553448998767899999866447421888862698-77886054340288678720533338--------89999998
Q ss_pred ---CCCEE--------------EEECCCCHHHHCCCCHHHHHHHHCCEEEEECCC-CHHHHHHHHHHHHH
Q ss_conf ---69879--------------996487567613630345765302115775158-88999999999998
Q gi|254780627|r 290 ---SAKQV--------------VAAADRPPSELESLDPRIRSRLQGGVSVPLGLH-DYEMRFSILKNRLA 341 (502)
Q Consensus 290 ---~gkqi--------------v~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~P-d~e~r~~Il~~k~~ 341 (502)
.|.-. ++.+---|.+ ..|.+.|.-|| ||.+++..| |.+.|..|++++..
T Consensus 151 ~~e~G~~~IeReg~s~~~ParF~LVatmNPeE-g~Lrp~lLDRf--~l~v~v~~~~~~~~r~eiv~r~~~ 217 (334)
T PRK13407 151 VAQSGENVVEREGLSIRHPARFVLVGSGNPEE-GELRPQLLDRF--GLSVEVRSPRDVETRVEVITRRDA 217 (334)
T ss_pred HHHCCCEEEEECCEEEECCCCCEEEEEECCCC-CCCCHHHHHHH--CEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 87169579997763460366265898208887-77598998361--006871487887776688999998
No 223
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.056 Score=34.10 Aligned_cols=128 Identities=27% Similarity=0.391 Sum_probs=73.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCC-----------------CCEE--------EEEHHHHHH----H---HHHHHH
Q ss_conf 8986278888579999999999863068-----------------8168--------646988899----9---999986
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPN-----------------LRVV--------YLTAEYFMW----R---FASAIR 246 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~-----------------~~v~--------y~~~e~F~~----~---~~~a~~ 246 (502)
+||-|++|+|||-|++-|++.+.+..-. -+|+ ++..+.|.. . .+..+.
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~le 87 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGLE 87 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEEEEEECCCCCEEEEEECCCCCCCCCEEEEEHHHHH
T ss_conf 99867998458999999999998559665139831142088275159998147955798884788762104786278889
Q ss_pred CCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEC---CCCHHHHCCCCHHHHHHHHCCEEEE
Q ss_conf 1988999999740310205444453175069999999999885698799964---8756761363034576530211577
Q gi|254780627|r 247 DNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAA---DRPPSELESLDPRIRSRLQGGVSVP 323 (502)
Q Consensus 247 ~~~~~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~ts---d~~P~~l~~l~~rL~SR~~~Gl~~~ 323 (502)
.-..+..++-++.+|+.+||.|--+.- +...|-..+......+|.+|.|- +|+| +-+++.++. |.++-
T Consensus 88 ~i~~~al~rA~~~aDvIIIDEIGpMEl--ks~~f~~~ve~vl~~~kpliatlHrrsr~P-----~v~~ik~~~--~v~v~ 158 (179)
T COG1618 88 EIAIPALRRALEEADVIIIDEIGPMEL--KSKKFREAVEEVLKSGKPLIATLHRRSRHP-----LVQRIKKLG--GVYVF 158 (179)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHH--CCHHHHHHHHHHHCCCCCEEEEEECCCCCH-----HHHHHHHCC--CEEEE
T ss_conf 986899998863499899943363302--008899999999658993799996256775-----899864248--77999
Q ss_pred ECCCCHHHHHHHHHH
Q ss_conf 515888999999999
Q gi|254780627|r 324 LGLHDYEMRFSILKN 338 (502)
Q Consensus 324 i~~Pd~e~r~~Il~~ 338 (502)
|.+ +-|-.|+.+
T Consensus 159 lt~---~NR~~i~~~ 170 (179)
T COG1618 159 LTP---ENRNRILNE 170 (179)
T ss_pred ECC---CHHHHHHHH
T ss_conf 751---215679999
No 224
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.31 E-value=0.012 Score=38.89 Aligned_cols=92 Identities=24% Similarity=0.309 Sum_probs=60.7
Q ss_pred EEEECCCCCCHH-HHHHHHHHHHHHHCCCCCEEEEEHH---HHHHHHHHHHHC--------CCHHHHHHHHHH------C
Q ss_conf 898627888857-9999999999863068816864698---889999999861--------988999999740------3
Q gi|254780627|r 199 LFIHASVGLGKT-HLLQAIANASIKRQPNLRVVYLTAE---YFMWRFASAIRD--------NCALNLKDSLRN------I 260 (502)
Q Consensus 199 Lfi~G~~GlGKT-HLl~ai~~~~~~~~~~~~v~y~~~e---~F~~~~~~a~~~--------~~~~~fr~~~r~------~ 260 (502)
-||||+-+.||| -||+.+-|+.... .+|+-.++. .|-...|.+-.. ....++.+.... +
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~g---~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~~~~~i~~~i~~~~~~~~~ 83 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEAG---MKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIPSDTDIFDEIAALHEKPPV 83 (201)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCC---CEEEEEECCCCCCCCCCEEEECCCCCCCCEECCCHHHHHHHHHHCCCCCCC
T ss_conf 99971576863599999999999759---808998525335356433653158766535638757899999851347875
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-CCEEEEEC
Q ss_conf 102054444531750699999999998856-98799964
Q gi|254780627|r 261 DLLLIDDMQFLQGKLIQHEFCHLLNSLLDS-AKQVVAAA 298 (502)
Q Consensus 261 DvLliDDiqfl~gk~tqee~f~~~n~l~~~-gkqiv~ts 298 (502)
|+++||-.|||. +++...++.+-++ |-.++..+
T Consensus 84 ~~v~IDEaQF~~-----~~~v~~l~~lad~lgi~Vi~~G 117 (201)
T COG1435 84 DCVLIDEAQFFD-----EELVYVLNELADRLGIPVICYG 117 (201)
T ss_pred CEEEEEHHHHCC-----HHHHHHHHHHHHHCCCEEEEEC
T ss_conf 789996167189-----7899999999861498899954
No 225
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.30 E-value=0.016 Score=37.96 Aligned_cols=107 Identities=17% Similarity=0.293 Sum_probs=59.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCC----------------CEEEEEHHHHHHHHHHHHHCC-----------CH
Q ss_conf 489862788885799999999998630688----------------168646988899999998619-----------88
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNL----------------RVVYLTAEYFMWRFASAIRDN-----------CA 250 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~----------------~v~y~~~e~F~~~~~~a~~~~-----------~~ 250 (502)
-+-|.|++|.|||-|+..+...+.....+. ++-|+.-+-+. |-..++++ .+
T Consensus 30 ~~aivG~sGsGKSTLl~~l~G~~~p~~G~i~i~g~~i~~~~~~~~~~i~~v~Q~~~l--f~~ti~~nlg~~LSgGqkqRv 107 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYL--FDTTLRNNLGRRFSGGERQRL 107 (178)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCEEHHHHHHHHHHHEEEECCCCCC--CCCHHHHHCCCCCCHHHHHHH
T ss_conf 999999998759999999986176678869999998899789999720898355636--454199862888899999999
Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCC
Q ss_conf 9999997403102054444531750699999999998856987999648756761363
Q gi|254780627|r 251 LNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 (502)
Q Consensus 251 ~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l 308 (502)
.--|.-+++.++|++|+-----...|+.+++..+..+. .+|.+|+.+-+. ..+...
T Consensus 108 ~iAral~~~p~ililDEpts~LD~~t~~~i~~~l~~~~-~~~Tvi~itH~~-~~l~~~ 163 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHL-TGIEHM 163 (178)
T ss_pred HHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCH-HHHHHC
T ss_conf 99999964979767228655699899999999999983-999999980589-899869
No 226
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.29 E-value=0.077 Score=33.09 Aligned_cols=106 Identities=25% Similarity=0.324 Sum_probs=66.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH-HHHHHC------------CCHHHHHHHHH--HCCHH
Q ss_conf 8986278888579999999999863068816864698889999-999861------------98899999974--03102
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF-ASAIRD------------NCALNLKDSLR--NIDLL 263 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~-~~a~~~------------~~~~~fr~~~r--~~DvL 263 (502)
..|-|.+|.||+-||--++..+.+ +.+|+|+|+|+=..+. ..|-|- .+++.--+... ..|+|
T Consensus 93 iLlgGePGIGKSTLlLQ~a~~la~---~~~vLYvSGEES~~Qik~RA~RLg~~~~~l~l~~et~l~~Il~~i~~~~P~~l 169 (454)
T PRK11823 93 VLIGGDPGIGKSTLLLQVAAALAA---GGKVLYVSGEESLQQIKLRAERLGLPSDNLYLLAETNLEDILATIEEEKPDLV 169 (454)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHC---CCCEEEECCCHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCEE
T ss_conf 995079988899999999999855---99579981501578999999975888887378853689999999986099889
Q ss_pred HHHHHHHHC--------CCCHH-HH-HHHHHHHHHHCCCEEEEECC-------CCHHHHCC
Q ss_conf 054444531--------75069-99-99999998856987999648-------75676136
Q gi|254780627|r 264 LIDDMQFLQ--------GKLIQ-HE-FCHLLNSLLDSAKQVVAAAD-------RPPSELES 307 (502)
Q Consensus 264 liDDiqfl~--------gk~tq-ee-~f~~~n~l~~~gkqiv~tsd-------~~P~~l~~ 307 (502)
+||-||-+. |--+| .| -..+...-...|-.+++.+- .-|+-|.+
T Consensus 170 IIDSIQT~~~~~~~s~pGsvsQVre~a~~L~~~AK~~~i~~~lVGHVTKdG~iAGPkvLEH 230 (454)
T PRK11823 170 VIDSIQTMYSPELESAPGSVSQVRECAAELTRLAKQSGIAVFLVGHVTKEGAIAGPRVLEH 230 (454)
T ss_pred EEECHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHH
T ss_conf 9943111541566778997899999999999999744982899997726776466145222
No 227
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.28 E-value=0.022 Score=36.99 Aligned_cols=111 Identities=18% Similarity=0.267 Sum_probs=61.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCC--EEEEEHHHHHHHHHHHHHCC----------CHHHHHHHHHHCCHHHHH
Q ss_conf 898627888857999999999986306881--68646988899999998619----------889999997403102054
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLR--VVYLTAEYFMWRFASAIRDN----------CALNLKDSLRNIDLLLID 266 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~--v~y~~~e~F~~~~~~a~~~~----------~~~~fr~~~r~~DvLliD 266 (502)
+.|.||||.|||.|++.+ .+.+|+.. |-|+| ..-+.+ +-++|.+...+=..|--
T Consensus 4 ivl~GpsG~GK~tl~~~l----~~~~~~~~~~vs~TT---------R~~R~gE~dG~dY~Fvs~~~F~~~i~~~~FlE~- 69 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKAL----LEEDPNLKFSISATT---------RKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEW- 69 (180)
T ss_pred EEEECCCCCCHHHHHHHH----HHHCCCCEEEEECCC---------CCCCCCCCCCCCEEEECHHHHHHHHHCCEEEEE-
T ss_conf 999899988999999999----976899448870446---------897998778873478508999999864964887-
Q ss_pred HHHHHCC-C-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHH
Q ss_conf 4445317-5-069999999999885698799964875676136303457653021157751588899999
Q gi|254780627|r 267 DMQFLQG-K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 (502)
Q Consensus 267 Diqfl~g-k-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~ 334 (502)
-++ .| . .|. ...++...++|+-+|+--| |+-.. .|...+..-.++=|.||+.+....
T Consensus 70 -~~~-~g~~YGt~---~~~i~~~~~~gk~vil~id--~~G~~----~lk~~~~~~~~IfI~pps~~~L~~ 128 (180)
T TIGR03263 70 -AEV-HGNYYGTP---KSPVEEALAAGKDVLLEID--VQGAR----QVKKKFPDAVSIFILPPSLEELER 128 (180)
T ss_pred -EEE-CCCCCCCC---HHHHHHHHHHCCCEEEECC--HHHHH----HHHHHCCCEEEEEEECCCHHHHHH
T ss_conf -677-16763574---7999999960998999878--99999----999758864899996889999999
No 228
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.28 E-value=0.07 Score=33.41 Aligned_cols=142 Identities=24% Similarity=0.349 Sum_probs=89.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH--HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf 548986278888579999999999863068816864698889--999999861988999999740310205444453175
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM--WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~--~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk 274 (502)
|-..+||.-|.||+-|..|+-+++... +.+.+=++-++.. -.++.-++... .-=+|..||+-|=.|.
T Consensus 86 NnVLLwGaRGtGKSSLVKA~~~e~~~~--glrLVEV~k~dl~~Lp~l~~~Lr~~~---------~kFIlFcDDLSFe~gd 154 (287)
T COG2607 86 NNVLLWGARGTGKSSLVKALLNEYADE--GLRLVEVDKEDLATLPDLVELLRARP---------EKFILFCDDLSFEEGD 154 (287)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEECHHHHHHHHHHHHHHHCCC---------CEEEEEECCCCCCCCC
T ss_conf 236776377777479999999998741--77079976888865799999996188---------6089995677777781
Q ss_pred CHHHHHHHHHHHHHH-------CCCEEEEECCC------------------CHHHHCCCCHH--HHHHHHCCEEEEECCC
Q ss_conf 069999999999885-------69879996487------------------56761363034--5765302115775158
Q gi|254780627|r 275 LIQHEFCHLLNSLLD-------SAKQVVAAADR------------------PPSELESLDPR--IRSRLQGGVSVPLGLH 327 (502)
Q Consensus 275 ~tqee~f~~~n~l~~-------~gkqiv~tsd~------------------~P~~l~~l~~r--L~SR~~~Gl~~~i~~P 327 (502)
.. |-.+....+ +|--+.-||.| +|++ .++++ |-.|| ||...-.||
T Consensus 155 ~~----yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~e--aveEKlSlSDRF--GLwL~F~~~ 226 (287)
T COG2607 155 DA----YKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSE--AVEEKLSLSDRF--GLWLSFYPC 226 (287)
T ss_pred HH----HHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHCCCCCCCCCHHH--HHHHHHCHHHHC--CEEECCCCC
T ss_conf 38----9999998538855688707999715875336276642778402358067--787762546423--404503687
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 88999999999998864311689789899999985
Q gi|254780627|r 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 (502)
Q Consensus 328 d~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~ 362 (502)
|-++-++|+... ++..++.+++|.+++=|-
T Consensus 227 ~Q~~YL~~V~~~-----a~~~~l~~~~e~l~~eAl 256 (287)
T COG2607 227 DQDEYLKIVDHY-----AKHFGLDISDEELHAEAL 256 (287)
T ss_pred CHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHH
T ss_conf 889999999999-----998599988789999999
No 229
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=96.25 E-value=0.062 Score=33.78 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHH-HHHHHHHHHCCCCCEEEEEHH
Q ss_conf 8986278888579999-999999863068816864698
Q gi|254780627|r 199 LFIHASVGLGKTHLLQ-AIANASIKRQPNLRVVYLTAE 235 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~-ai~~~~~~~~~~~~v~y~~~e 235 (502)
+++.+++|.|||.... ++-+.+.+.....+++|+..-
T Consensus 17 ~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~Pt 54 (167)
T pfam00270 17 VLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAPT 54 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf 89988999758999999999998747789879999060
No 230
>KOG0991 consensus
Probab=96.25 E-value=0.046 Score=34.70 Aligned_cols=186 Identities=21% Similarity=0.213 Sum_probs=108.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHC
Q ss_conf 28861478999999998241001365555548986278888579999999999863068816864698889999999861
Q gi|254780627|r 168 IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 (502)
Q Consensus 168 VVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~ 247 (502)
|||+.+-+..- +-+|+ .|... -|.|-|++|.|||.-.++.+++++...-.--|+-+.|.+= .=++-+|
T Consensus 29 IVGNe~tv~rl--~via~-~gnmP------~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde--RGIDvVR- 96 (333)
T KOG0991 29 IVGNEDTVERL--SVIAK-EGNMP------NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE--RGIDVVR- 96 (333)
T ss_pred HHCCHHHHHHH--HHHHH-CCCCC------CEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCC--CCCHHHH-
T ss_conf 21779899999--99997-28998------6675279998616489999999838066657632057655--4608999-
Q ss_pred CCHHHHHHHHH-----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEE
Q ss_conf 98899999974-----0310205444453175069999999999885698799964875676136303457653021157
Q gi|254780627|r 248 NCALNLKDSLR-----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 (502)
Q Consensus 248 ~~~~~fr~~~r-----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~ 322 (502)
+.+..|.++-- ..-+.++|.-.-.. -..|..+=-|. ++|.+-.+-.++|...-+-+. + +.||..-=--.
T Consensus 97 n~IK~FAQ~kv~lp~grhKIiILDEADSMT-~gAQQAlRRtM-EiyS~ttRFalaCN~s~KIiE---P-IQSRCAiLRys 170 (333)
T KOG0991 97 NKIKMFAQKKVTLPPGRHKIIILDEADSMT-AGAQQALRRTM-EIYSNTTRFALACNQSEKIIE---P-IQSRCAILRYS 170 (333)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEECCCHHH-HHHHHHHHHHH-HHHCCCCHHHHHHCCHHHHHH---H-HHHHHHHHHHC
T ss_conf 999999872034899852489961522020-68999999999-997063200000154213222---6-77345765322
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 751588899999999999886431168978989999998502788899999999999986
Q gi|254780627|r 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 (502)
Q Consensus 323 ~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~ 382 (502)
.+.. ..||++-+.. ++.+++..++|-++-|.....|+.|+ +||.|-+-.
T Consensus 171 klsd------~qiL~Rl~~v--~k~Ekv~yt~dgLeaiifta~GDMRQ---alNnLQst~ 219 (333)
T KOG0991 171 KLSD------QQILKRLLEV--AKAEKVNYTDDGLEAIIFTAQGDMRQ---ALNNLQSTV 219 (333)
T ss_pred CCCH------HHHHHHHHHH--HHHHCCCCCCCHHHHHHHHCCCHHHH---HHHHHHHHH
T ss_conf 2678------9999999999--98707887711477855441661999---999999874
No 231
>pfam11490 DNA_pol3_alph_N DNA polymerase III polC-type N-terminus. This is an N-terminal domain of DNA polymerase III polC subunit A that is found only in Firmicutes. DNA polymerase polC-type III enzyme functions as the 'replicase' in low G + C Gram-positive bacteria. Purine asymmetry is a characteristic of organisms with a heterodimeric DNA polymerase III alpha-subunit constituted by polC which probably plays a direct role in the maintenance of strand-biased gene distribution; since, among prokaryotic genomes, the distribution of genes on the leading and lagging strands of the replication fork is known to be biased. The domain is associated with DNA_pol3_alpha pfam07733.
Probab=96.25 E-value=0.049 Score=34.50 Aligned_cols=80 Identities=13% Similarity=0.179 Sum_probs=65.4
Q ss_pred HCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 30798999999999999866978897430240578853998989838989999999989999999999862776650789
Q gi|254780627|r 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEIL 110 (502)
Q Consensus 31 ~~~d~~~iW~~il~~Lk~~l~~~~F~tWi~pL~~i~~e~~~L~L~vPn~FikdwIe~~Y~~~I~~al~~~~g~~~~I~i~ 110 (502)
.+...+.-|+.|+..+... -+.+..|+....+ .++|+.+.|.++|.+.++.+.+++.+.+.+.+....-....+.+.
T Consensus 58 ~ee~l~~Yw~~iv~~~~~~--~p~~~~~l~~~~~-~~~~~~l~i~~~~e~~~~~lk~~~~~~~~~~~~~~gF~~~~~~v~ 134 (180)
T pfam11490 58 TEELLQDYWEYIVEELSKK--SPSLKSLLKKQKP-ELEGNKLIIKVPNEIEANFLKKKKLDKLLEEYIKFGFGKLKIDVE 134 (180)
T ss_pred HHHHHHHHHHHHHHHHHCC--CHHHHHHHHCCCE-EEECCEEEEEECCHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEE
T ss_conf 4999999999999986105--7899999854982-898999999969889999999851179999999748997058999
Q ss_pred EEC
Q ss_conf 721
Q gi|254780627|r 111 VRS 113 (502)
Q Consensus 111 i~~ 113 (502)
++.
T Consensus 135 v~~ 137 (180)
T pfam11490 135 VDE 137 (180)
T ss_pred ECC
T ss_conf 765
No 232
>PRK04296 thymidine kinase; Provisional
Probab=96.22 E-value=0.0058 Score=41.07 Aligned_cols=92 Identities=25% Similarity=0.316 Sum_probs=56.0
Q ss_pred EEECCCCCCHH-HHHHHHHHHHHHHCCCCCEEEEEHH---HHHHHHHHH--------HHCCCHHHH------HHHHHHCC
Q ss_conf 98627888857-9999999999863068816864698---889999999--------861988999------99974031
Q gi|254780627|r 200 FIHASVGLGKT-HLLQAIANASIKRQPNLRVVYLTAE---YFMWRFASA--------IRDNCALNL------KDSLRNID 261 (502)
Q Consensus 200 fi~G~~GlGKT-HLl~ai~~~~~~~~~~~~v~y~~~e---~F~~~~~~a--------~~~~~~~~f------r~~~r~~D 261 (502)
||+||-..||| .|++.+-++ ... +.+|+.+... +|....+.+ +.-.+..++ ...+.++|
T Consensus 6 ~i~GpMfSGKTteLi~~~~~~-~~~--gkkvl~~kp~~D~Ry~~~~I~Sh~g~~~~~~~v~~~~~i~~~~~~~~~~~~~d 82 (197)
T PRK04296 6 FIYGAMNSGKSTELLQRAYNY-EER--GMKVLVFTPAIDDRYGEGKVVSRIGLSREAILISSDTDIFELIEEEHEGGKID 82 (197)
T ss_pred EEECCCCCHHHHHHHHHHHHH-HHC--CCEEEEEEECCCCCCCCCCEECCCCCEEEEEEECCHHHHHHHHHHHHCCCCCC
T ss_conf 999342788899999999999-987--99599998534465777857867898346899487899999998763047856
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 0205444453175069999999999885698799964
Q gi|254780627|r 262 LLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAA 298 (502)
Q Consensus 262 vLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~ts 298 (502)
++.||..|||.. +.+..+.+.+.+.|+.|++++
T Consensus 83 vI~IDEaQFf~~----~~i~~~~~~~~~~~~~Viv~G 115 (197)
T PRK04296 83 CVLIDEAQFLDK----EQVVQLAEVVDDLGIPVICYG 115 (197)
T ss_pred EEEECCHHCCCH----HHHHHHHHHHHHCCCEEEEEE
T ss_conf 899720212798----999999999983185899976
No 233
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.21 E-value=0.024 Score=36.66 Aligned_cols=107 Identities=20% Similarity=0.296 Sum_probs=72.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH-------HHHHHHHH-----CCCHHHH---HHHHHHCCHH
Q ss_conf 8986278888579999999999863068816864698889-------99999986-----1988999---9997403102
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM-------WRFASAIR-----DNCALNL---KDSLRNIDLL 263 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~-------~~~~~a~~-----~~~~~~f---r~~~r~~DvL 263 (502)
+-+-||+|+|||-=|.-.|....-.....+|-.+|.+.|- ..|..-+. -.+..+| ...+++||+.
T Consensus 206 i~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~I 285 (407)
T COG1419 206 IALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDVI 285 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCEE
T ss_conf 99989988758879999999997532576068997144115289999999998699559963999999999985318889
Q ss_pred HHHHHHHHCCC-----CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCC
Q ss_conf 05444453175-----06999999999988569879996487567613630
Q gi|254780627|r 264 LIDDMQFLQGK-----LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 (502)
Q Consensus 264 liDDiqfl~gk-----~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~ 309 (502)
|+|- +|+ .--+|+-..++.-++..-.+|+++...-.+|..+=
T Consensus 286 LVDT----aGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~ 332 (407)
T COG1419 286 LVDT----AGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEII 332 (407)
T ss_pred EEEC----CCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH
T ss_conf 9968----9988337899999999970356621799984576468899999
No 234
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.18 E-value=0.13 Score=31.40 Aligned_cols=209 Identities=18% Similarity=0.288 Sum_probs=114.0
Q ss_pred HHHHHCCCCCHH---HHHH---HHHHHHHCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf 887632886147---8999---9999982410013-65555548986278888579999999999863068816864698
Q gi|254780627|r 163 VFSTFIEGSSNR---VALT---AAQSIAEVDSHGY-TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 (502)
Q Consensus 163 TFDnFVVG~sN~---lA~a---AAkaVAe~pg~~~-~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e 235 (502)
-.|.||+|.... +|.| --+++.......- ....-.-..+-||+|.|||+|.+.++..+ .-| ..-..|-
T Consensus 69 ~LD~yVIGQ~~AKk~lsVAvyNHykRi~~~~~~~~~vei~KsNILliGPTG~GKTlla~tLAk~l--~vP---F~iaDAT 143 (411)
T PRK05342 69 HLDQYVIGQERAKKVLSVAVYNHYKRLRQNGSKSDDVELQKSNILLIGPTGSGKTLLAQTLARIL--NVP---FAIADAT 143 (411)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH--CCC---EEEEEEC
T ss_conf 86214028488889999999999999860213356652134538998999977889999999986--999---8998612
Q ss_pred HHH-------------HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHH
Q ss_conf 889-------------99999986198899999974031020544445317-------------5069999999999885
Q gi|254780627|r 236 YFM-------------WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-------------KLIQHEFCHLLNSLLD 289 (502)
Q Consensus 236 ~F~-------------~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~g-------------k~tqee~f~~~n~l~~ 289 (502)
.|| .+++.+. +++++.- ..-+.-||-|.-++. ...|..|+-++.--.-
T Consensus 144 ~lTEaGYVGeDVE~ii~~Llq~A-d~dve~A-----e~GIV~IDEIDKIarks~~~s~trDVSgEGVQqaLLkiiEGt~v 217 (411)
T PRK05342 144 TLTEAGYVGEDVENILLKLLQAA-DYDVEKA-----QRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVA 217 (411)
T ss_pred EECCCCCCCCCHHHHHHHHHHHC-CCCHHHH-----HCCEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 00126745607999999999982-8889988-----36828885023454247888887776512489999998758714
Q ss_pred C------------------CCEEEEEC---------------------------------------CCCHHHHC--CCCH
Q ss_conf 6------------------98799964---------------------------------------87567613--6303
Q gi|254780627|r 290 S------------------AKQVVAAA---------------------------------------DRPPSELE--SLDP 310 (502)
Q Consensus 290 ~------------------gkqiv~ts---------------------------------------d~~P~~l~--~l~~ 310 (502)
+ -+.|+|-| .-.|.||- ||-+
T Consensus 218 ~vp~~ggrkhp~~~~~~idT~nILFI~gGAF~GL~~II~~R~~~~~iGF~~~~~~~~~~~~~~~l~~v~p~DLi~fGlIP 297 (411)
T PRK05342 218 SVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKSGIGFGAEVKSKDEKDLGELLAQVEPEDLVKFGLIP 297 (411)
T ss_pred CCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCH
T ss_conf 11888777787765167614717999115533589999863578876778876641100056787627987888738837
Q ss_pred HHHHHHHCCEEEEECCCCHHHHHHHH--------HHHHHHHHHHCCCCCCCHHHHHHHHHHC---CCCHHHHHHHHHHHH
Q ss_conf 45765302115775158889999999--------9999886431168978989999998502---788899999999999
Q gi|254780627|r 311 RIRSRLQGGVSVPLGLHDYEMRFSIL--------KNRLAISQKEDPKLNINEEVLMHVARTV---TTSGRELDGAFNQLV 379 (502)
Q Consensus 311 rL~SR~~~Gl~~~i~~Pd~e~r~~Il--------~~k~~~~~~~~~~~~l~~~v~~~la~~~---~~~vR~Legal~~l~ 379 (502)
.|+.||- .++.+++-+.+.-+.|| ++.-+....+.-.+.+++++++.||+.. .+.-|-|-+.+-++.
T Consensus 298 EfiGRlP--Viv~L~~L~~~~L~~ILtePkNaLikQY~~LF~~dgV~L~Ft~~AL~~IA~~A~~~~tGARgLRsIlE~iL 375 (411)
T PRK05342 298 EFIGRLP--VVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDDALEAIAKKAIERKTGARGLRSILEEVL 375 (411)
T ss_pred HHHCCCC--EEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 7614664--05462447999999996587415999999999754967998689999999999984757457799999997
Q ss_pred HHHHH
Q ss_conf 98630
Q gi|254780627|r 380 FRHSF 384 (502)
Q Consensus 380 ~~~~~ 384 (502)
.-.+|
T Consensus 376 ld~MF 380 (411)
T PRK05342 376 LDVMF 380 (411)
T ss_pred HHHHC
T ss_conf 88754
No 235
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.17 E-value=0.0075 Score=40.27 Aligned_cols=47 Identities=34% Similarity=0.381 Sum_probs=35.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE-EHHHH--HHHHHHHH
Q ss_conf 8986278888579999999999863068816864-69888--99999998
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL-TAEYF--MWRFASAI 245 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~-~~e~F--~~~~~~a~ 245 (502)
.-|.|++|+|||.||+.|.+.+.+++++..++|+ -.|.- ..+|+..+
T Consensus 19 ~gI~g~~gvGKT~Ll~~i~~~~~~~~~~~~~v~~lIGER~rEv~e~~~~~ 68 (249)
T cd01128 19 GLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHH
T ss_conf 78878999889999999999999858984999999716579999999971
No 236
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.07 E-value=0.034 Score=35.59 Aligned_cols=110 Identities=19% Similarity=0.295 Sum_probs=69.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH--HCCCCCEEEEEHHHHH-------HHHHHHHH-----CCCHHHHH---HHHHHCC
Q ss_conf 898627888857999999999986--3068816864698889-------99999986-----19889999---9974031
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIK--RQPNLRVVYLTAEYFM-------WRFASAIR-----DNCALNLK---DSLRNID 261 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~--~~~~~~v~y~~~e~F~-------~~~~~a~~-----~~~~~~fr---~~~r~~D 261 (502)
+.+.||+|+|||-=+-=+|..+.- +.++.+|..+|++.|- ..|..-+. ..+..+++ .+++++|
T Consensus 177 i~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~~~l~~~~~~D 256 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFD 256 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCC
T ss_conf 99989988757879999999999862676773799980787588999999999997880698578899999999724999
Q ss_pred HHHHHHHHHHCCCC----H-HHHHHHHHHHHHH-CCCEEEEECCCCHHHHCCCCHHH
Q ss_conf 02054444531750----6-9999999999885-69879996487567613630345
Q gi|254780627|r 262 LLLIDDMQFLQGKL----I-QHEFCHLLNSLLD-SAKQVVAAADRPPSELESLDPRI 312 (502)
Q Consensus 262 vLliDDiqfl~gk~----t-qee~f~~~n~l~~-~gkqiv~tsd~~P~~l~~l~~rL 312 (502)
++|||- +|+. . .+|+-..+..... ..-.+|+++-..+.++...-.+.
T Consensus 257 ~IlIDT----AGrs~~d~~~~~el~~~~~~~~~~~~~~Lvlsat~~~~d~~~i~~~f 309 (388)
T PRK12723 257 LVLIDT----IGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDIKEIFHQF 309 (388)
T ss_pred EEEEEC----CCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 999958----99885689999999999974189845999987989999999999984
No 237
>PRK10536 hypothetical protein; Provisional
Probab=96.06 E-value=0.13 Score=31.38 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=29.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 4898627888857999999999986306881686469
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~ 234 (502)
-.|..|+.|.|||.|--|.|-+.+....-.+++++-+
T Consensus 76 ivf~~GpAGTGKT~lA~a~Al~~l~~~~~~kIIltRP 112 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRP 112 (262)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 3999899987589999999999998588868999667
No 238
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=96.06 E-value=0.024 Score=36.66 Aligned_cols=97 Identities=26% Similarity=0.284 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CEEEEECCCCHHHHCC--------CCHHHHHHHHCCEEEEECCCCH
Q ss_conf 31020544445317506999999999988569--8799964875676136--------3034576530211577515888
Q gi|254780627|r 260 IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSA--KQVVAAADRPPSELES--------LDPRIRSRLQGGVSVPLGLHDY 329 (502)
Q Consensus 260 ~DvLliDDiqfl~gk~tqee~f~~~n~l~~~g--kqiv~tsd~~P~~l~~--------l~~rL~SR~~~Gl~~~i~~Pd~ 329 (502)
--||.||++|.|- -|-|.-+|...+.. --|||++.|--..+.| ++--|..| -|++...|-..
T Consensus 276 pGVLFIDEvHMLD-----iEcFsfLnralEs~laPivI~ATNRG~~~IRGTd~~sPHGiP~DlLDR---llII~T~py~~ 347 (395)
T pfam06068 276 PGVLFIDEVHMLD-----IECFSFLNRALESELAPIVILATNRGICTIRGTDIISPHGIPLDLLDR---LLIITTEPYTR 347 (395)
T ss_pred CCCEEEECCHHCC-----HHHHHHHHHHHCCCCCCEEEEEECCCCEEECCCCCCCCCCCCHHHHHH---EEEEECCCCCH
T ss_conf 2746885000000-----589988877650567876999844652035256775888998777730---25885688998
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC-CCHH
Q ss_conf 999999999998864311689789899999985027-8889
Q gi|254780627|r 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT-TSGR 369 (502)
Q Consensus 330 e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~-~~vR 369 (502)
+.-..||+-+ ++.+++.++++++++|+.--. ++.|
T Consensus 348 ~ei~~Ii~iR-----a~~E~v~l~~~al~~L~~ig~~~SLR 383 (395)
T pfam06068 348 EEIKQILEIR-----AQEEGVEISEEALDLLAKIGEETSLR 383 (395)
T ss_pred HHHHHHHHHH-----HHHHCCCCCHHHHHHHHHHHHHCCHH
T ss_conf 9999999987-----77607877989999999865320299
No 239
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=96.03 E-value=0.099 Score=32.33 Aligned_cols=36 Identities=28% Similarity=0.297 Sum_probs=29.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 898627888857999999999986306881686469
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~ 234 (502)
.++.|+.|.|||+|--+.|-+......-.+++|+.+
T Consensus 22 v~~~GpAGtGKT~la~~~al~~l~~~~~~kiii~Rp 57 (205)
T pfam02562 22 VFGIGPAGTGKTYLAVAAAVDALKDGKVKRIILTRP 57 (205)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 799899986099999999999997189437999757
No 240
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.02 E-value=0.16 Score=30.86 Aligned_cols=251 Identities=12% Similarity=0.144 Sum_probs=121.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCC--------CEEEEEHHHHHHHHHHHHHCCC----HHHHHH-H-HHH-CCHH
Q ss_conf 89862788885799999999998630688--------1686469888999999986198----899999-9-740-3102
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNL--------RVVYLTAEYFMWRFASAIRDNC----ALNLKD-S-LRN-IDLL 263 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~--------~v~y~~~e~F~~~~~~a~~~~~----~~~fr~-~-~r~-~DvL 263 (502)
..++|+.|.|||.+...+++.+....++. .+.++..++ ..+.... +.++.. . +.+ .-|.
T Consensus 23 YLF~G~~G~Gk~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~id~~~------~~i~~~~i~~~i~~~~~~~~~~~~~Kv~ 96 (303)
T PRK07132 23 FLLKSNYNNDLDESILYFLNKFNNLQSLNLNLEELPYNIFLFDIFD------EDLSKEEFLSAIEKFSFSSFVSNQKKIL 96 (303)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCC------CCHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 8867899867999999999997299878887545653230413322------2001688999999997366556870699
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 05444453175069999999999885698799964875676136303457653021157751588899999999999886
Q gi|254780627|r 264 LIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 (502)
Q Consensus 264 liDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~ 343 (502)
+||++|.+. ..++.-|+-|+.+--. +--+++++..+ . .+.+-++||.+ +.++.+++.+.-...|..+
T Consensus 97 IIdea~~lt-~~A~NaLLKtLEEPp~-~~~fil~t~~~-~---~il~TI~SRCq---~~~f~~~~~~~i~~~l~e~---- 163 (303)
T PRK07132 97 IIKNIEKTS-NSSLNALLKTIEEPSK-NTYFLLTTKNI-N---KVIPTIVSRCQ---VINVKEPDQQKILAKLLSQ---- 163 (303)
T ss_pred EEECHHHCC-HHHHHHHHHHCCCCCC-CEEEEEEECCH-H---HCCHHHHHCCE---EEECCCCCHHHHHHHHHHC----
T ss_conf 981655339-9999999987038986-84899972882-4---38377863665---6637889999999999864----
Q ss_pred HHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC---------CCCHHHH
Q ss_conf 4311689789899999985027888999999999999863024687788999998763037887---------5798999
Q gi|254780627|r 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETK---------KMRIEDI 414 (502)
Q Consensus 344 ~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~i~~~~I 414 (502)
...++...+.|.-+. | ++-|..-+ . .-..++.++.++.+....... ..+.++.
T Consensus 164 -------~~~~e~~~~~a~~~~-n---~~~a~~~~----~---~e~~~~~~~~~~~l~~~~~~~~~~~~fl~~~~~~~~~ 225 (303)
T PRK07132 164 -------NKEKEFEKFYAYIFK-N---FEDAIKYI----S---KISENLVKKFIKALNKSLKEKYSLLIFLNEKLNKENA 225 (303)
T ss_pred -------CCCCHHHHHHHHHHC-C---HHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -------775278999999974-7---58899998----6---4239999999999998741147899999988778479
Q ss_pred --HHHHHHHHCCCHHHHHCCCCCHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf --999999809999994088877401445799999999851568789998847984379999999999998616999999
Q gi|254780627|r 415 --QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 (502)
Q Consensus 415 --~~~V~~~~~i~~~~l~s~~R~~~i~~~RqiamyL~r~~t~~s~~~IG~~fg~rdHsTV~~a~~ki~~~~~~d~~~~~~ 492 (502)
...+-.+| -.++....-+..+-.--....+-. +.++-. +-+-|++++.+....++.+..|.-.
T Consensus 226 ~~l~~ll~~~---~~~i~~~~~~~~~~~~k~~~~~~~-------~~~~~~-----~~~~ii~~id~~~~~L~aNvNF~L~ 290 (303)
T PRK07132 226 LFLVKLLLFY---FKSIFLNKKKKKIKNSKKTFLFEK-------YKEIKI-----SFYKVMTSIDEFLTKLEQNENFFIQ 290 (303)
T ss_pred HHHHHHHHHH---HHHHHHHHCCHHHHHHHHHHHHHH-------HHHHHH-----HHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 9999999999---999988601001688998999999-------988887-----8999999999999988703488999
Q ss_pred HHHHHHHHC
Q ss_conf 999998742
Q gi|254780627|r 493 VELLKRLIS 501 (502)
Q Consensus 493 i~~i~~~i~ 501 (502)
++.+.=+|+
T Consensus 291 ~E~mll~I~ 299 (303)
T PRK07132 291 KQAFLLKIN 299 (303)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 241
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.00 E-value=0.12 Score=31.80 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=32.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHH
Q ss_conf 898627888857999999999986306881686469888999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFAS 243 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~ 243 (502)
-.|.|.+|.|||.++..++..+..+. +.+|+|++.|.=..+...
T Consensus 22 ~vi~g~pg~GKS~~~~~~a~~~a~~~-g~~Vl~~slEm~~~~~~~ 65 (186)
T pfam03796 22 IIIAARPSMGKTAFALNIARNAALKQ-DKPVLFFSLEMSAEQLAE 65 (186)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHH
T ss_conf 99996799987999999999999970-996687547552999999
No 242
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.00 E-value=0.085 Score=32.79 Aligned_cols=106 Identities=26% Similarity=0.283 Sum_probs=66.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCC-H
Q ss_conf 489862788885799999999998630688168646988899999998619889999997403102054444531750-6
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~-t 276 (502)
.+.|+|.+|+|||.||++..+. +..| +.-|.+.++-- ..|=. +.+.+ |
T Consensus 139 ~~vl~G~TG~GKT~lL~~L~~~------G~~v--iDLEglA~HRG--------S~FG~---------------~~~~QPs 187 (333)
T PRK11784 139 LVVLGGMTGSGKTRLLQALANA------GAQV--LDLEGLANHRG--------SSFGR---------------LGGPQPS 187 (333)
T ss_pred CEEEECCCCCCHHHHHHHHHHC------CCCE--ECHHHHHHCCC--------CCCCC---------------CCCCCCC
T ss_conf 5998678887789999999975------9974--33898863256--------42358---------------8999987
Q ss_pred HHHH----HHHHHHHHHCCCEEEEECC-CCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHH
Q ss_conf 9999----9999998856987999648-756761363034576530211577515888999999999
Q gi|254780627|r 277 QHEF----CHLLNSLLDSAKQVVAAAD-RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 (502)
Q Consensus 277 qee~----f~~~n~l~~~gkqiv~tsd-~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~ 338 (502)
|..| +..+..+- .+.|++-+. +.-..+ .+++.|..++..|-++.|+.| +|.|++.|..
T Consensus 188 Qk~FE~~L~~~l~~~~--~~~i~vE~ESr~IG~~-~iP~~l~~~M~~a~~i~i~~~-~e~Rv~~l~~ 250 (333)
T PRK11784 188 QKDFENLLAEALLKLD--PAPIVVEDESRRIGRV-HLPEALYEAMQAAPIVEVEAP-LEERVERLLE 250 (333)
T ss_pred HHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCC-CCCHHHHHHHHHCCEEEEECC-HHHHHHHHHH
T ss_conf 8999999999998089--9856996010030671-389999999962988999899-9999999999
No 243
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.00 E-value=0.014 Score=38.28 Aligned_cols=140 Identities=18% Similarity=0.223 Sum_probs=74.7
Q ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHH
Q ss_conf 44788763288614789999999982410013655555489862788885799999999998630688168646988899
Q gi|254780627|r 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 (502)
Q Consensus 160 pryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~ 239 (502)
..+|.|.+|....=.-..+.-...|-.-+. | ++|.|++|.|||.||.|+.+++....|..|++-+ |+ +.
T Consensus 121 ~~~tL~dlv~~G~~~~~~a~~L~~~V~~r~-------n-ilI~G~TgsGKTTll~all~~i~~~~p~eRivtI--ED-~~ 189 (320)
T PRK13894 121 AIFTLDQYVERGIMTAEQREAIIAAVRAHR-------N-ILVIGGTGSGKTTLVNAIINEMVIQDPTERVFII--ED-TG 189 (320)
T ss_pred CCCCHHHHHHCCCCCHHHHHHHHHHHHCCC-------C-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEE--CC-HH
T ss_conf 999999998769999999999999997287-------5-8998588865689999998632026952017752--58-78
Q ss_pred HHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHC
Q ss_conf 999998619889999997403102054444531750-6999999999988569879996487567613630345765302
Q gi|254780627|r 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 (502)
Q Consensus 240 ~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~ 318 (502)
|+- +... +-++...... |...++. .+|..+-..||+.=-|-+.-.. +-.-+-+= ..
T Consensus 190 EL~--~~~~-----------------n~v~~~~~~~vt~~~Ll~--~aLR~rPDRIivGEvRg~Ea~~-~l~A~nTG-H~ 246 (320)
T PRK13894 190 EIQ--CAAE-----------------NYVQYHTSIDVNMTALLK--TTLRMRPDRILVGEVRGPEALD-LLMAWNTG-HE 246 (320)
T ss_pred HHC--CCCC-----------------CEEEEECCCCCCHHHHHH--HHHCCCCCEEEECCCCCHHHHH-HHHHHHCC-CC
T ss_conf 807--8777-----------------735764478868999999--9736799858766547489999-99999669-98
Q ss_pred CEEEEECCCCHHHHH
Q ss_conf 115775158889999
Q gi|254780627|r 319 GVSVPLGLHDYEMRF 333 (502)
Q Consensus 319 Gl~~~i~~Pd~e~r~ 333 (502)
|-.+.|+..+-+.-+
T Consensus 247 Gs~tTiHA~sa~~al 261 (320)
T PRK13894 247 GGAATLHANNAKAGL 261 (320)
T ss_pred CCEEEECCCCHHHHH
T ss_conf 720534679999999
No 244
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.99 E-value=0.045 Score=34.77 Aligned_cols=101 Identities=14% Similarity=0.213 Sum_probs=60.5
Q ss_pred HHHHHCCHHHHHHHHHHCC-C-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHH
Q ss_conf 9974031020544445317-5-0699999999998856987999648756761363034576530211577515888999
Q gi|254780627|r 255 DSLRNIDLLLIDDMQFLQG-K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 (502)
Q Consensus 255 ~~~r~~DvLliDDiqfl~g-k-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r 332 (502)
.-..+.|+|++|. -.+| . .++++++..+..+.+.|+.||++|-. ..++..+-+|+. -+..|=++...+|+
T Consensus 157 al~~~P~iLiLDE--Pts~LD~~~~~~i~~~i~~l~~~g~TiilvSH~-l~~v~~lcDri~-vl~~GkIi~~G~~~---- 228 (264)
T PRK13546 157 NITVNPDILVIDE--ALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHN-LGQVRQFCTKIA-WIEGGKLKDYGELD---- 228 (264)
T ss_pred HHHCCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC-HHHHHHHCCEEE-EEECCEEEEECCHH----
T ss_conf 9956999999959--875489999999999999999689899998487-899998699999-99898899985999----
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999999988643116897898999999850278889999999999
Q gi|254780627|r 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 (502)
Q Consensus 333 ~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l 378 (502)
.|+.+ .+. -+-+|-+. .....++|+|-+-..
T Consensus 229 -evl~k-y~~------------~~~~~~~~-~~~e~~~~~~~~~~~ 259 (264)
T PRK13546 229 -DVLPK-YEA------------FLNDFKKK-SKAEQKEFRNKLDES 259 (264)
T ss_pred -HHHHH-HHH------------HHHHHHHC-CHHHHHHHHHHHHHH
T ss_conf -99999-999------------99999861-877899987566641
No 245
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.97 E-value=0.025 Score=36.58 Aligned_cols=110 Identities=23% Similarity=0.284 Sum_probs=52.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCC----------------CCEEEEEH----------HHHHHHHHHHHHCC----
Q ss_conf 8986278888579999999999863068----------------81686469----------88899999998619----
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPN----------------LRVVYLTA----------EYFMWRFASAIRDN---- 248 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~----------------~~v~y~~~----------e~F~~~~~~a~~~~---- 248 (502)
+-|-|++|.|||.||+++........-. .++-|+.- ++-. +|...++.=
T Consensus 38 ~~ilGpnGaGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l-~~~a~l~~LSgGq 116 (194)
T cd03213 38 TAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETL-MFAAKLRGLSGGE 116 (194)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCEECCHHHHHHEEEEECCCCCCCCCCCHHHHH-HHHHHHCCCCHHH
T ss_conf 999989995199999998577778996289999999997578431289984665237768499999-9998726988899
Q ss_pred --CHHHHHHHHHHCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHH
Q ss_conf --88999999740310205444453175--0699999999998856987999648756761363034
Q gi|254780627|r 249 --CALNLKDSLRNIDLLLIDDMQFLQGK--LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 (502)
Q Consensus 249 --~~~~fr~~~r~~DvLliDDiqfl~gk--~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~r 311 (502)
.+.--+.-..+.++|++|. =.+|= .++.+++.++..+.+.|+.||+++-....++..+-||
T Consensus 117 rqRv~iA~aL~~~P~illlDE--PTsgLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~Dr 181 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDE--PTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDK 181 (194)
T ss_pred HHHHHHHHHHHCCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCE
T ss_conf 999999999963998899948--98788989999999999999968989999958885999997999
No 246
>KOG1970 consensus
Probab=95.95 E-value=0.079 Score=33.03 Aligned_cols=210 Identities=12% Similarity=0.103 Sum_probs=96.4
Q ss_pred HHHHHHCCCCCHHHHHH---------HHHHHHH-CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHC-----CC
Q ss_conf 78876328861478999---------9999982-410013655555489862788885799999999998630-----68
Q gi|254780627|r 162 FVFSTFIEGSSNRVALT---------AAQSIAE-VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ-----PN 226 (502)
Q Consensus 162 yTFDnFVVG~sN~lA~a---------AAkaVAe-~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~-----~~ 226 (502)
.=||-|.--..-++|.- +-+.+++ .|+. .-+-|+|.||+|.|||--++-++-+.--+. |-
T Consensus 71 lW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l-----~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi 145 (634)
T KOG1970 71 LWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKL-----GSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPI 145 (634)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCC
T ss_conf 25776085628887551774899999999999745366-----7607998579888713199999986480212304776
Q ss_pred --CCEEEEEHHHHHHH--HHHHHHC-CCHHHHHHHHH-----------HCCHHHHHHHHHHCC--C-CHHHHHHHHHHHH
Q ss_conf --81686469888999--9999861-98899999974-----------031020544445317--5-0699999999998
Q gi|254780627|r 227 --LRVVYLTAEYFMWR--FASAIRD-NCALNLKDSLR-----------NIDLLLIDDMQFLQG--K-LIQHEFCHLLNSL 287 (502)
Q Consensus 227 --~~v~y~~~e~F~~~--~~~a~~~-~~~~~fr~~~r-----------~~DvLliDDiqfl~g--k-~tqee~f~~~n~l 287 (502)
.-.-|...+.+... |.+-+.. ....++..+|- .--+|||||+-...+ + .++.|.+. .+
T Consensus 146 ~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~---~y 222 (634)
T KOG1970 146 NLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLR---LY 222 (634)
T ss_pred CCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HH
T ss_conf 656655545544001330366789999899998762316531333346750798502614440036999999999---99
Q ss_pred HHCCCE--EEEECCCCHHHHCCCCHHHHH-H--HHCC-EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC-HHHHHHH
Q ss_conf 856987--999648756761363034576-5--3021-1577515888999999999998864311689789-8999999
Q gi|254780627|r 288 LDSAKQ--VVAAADRPPSELESLDPRIRS-R--LQGG-VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN-EEVLMHV 360 (502)
Q Consensus 288 ~~~gkq--iv~tsd~~P~~l~~l~~rL~S-R--~~~G-l~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~-~~v~~~l 360 (502)
...|.- |++-+|.--.... -.+|+.- - -.-| ..+.-+|-.--...+-|++-|-.......++.++ ...++-|
T Consensus 223 ~s~g~~PlIf~iTd~~~~g~n-nq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i 301 (634)
T KOG1970 223 VSIGRCPLIFIITDSLSNGNN-NQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELI 301 (634)
T ss_pred HHCCCCCEEEEEECCCCCCCC-CHHHHCHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 845777679998635357876-3434242656533585247615776799999999999986266666767506799999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 85027888999999999999863
Q gi|254780627|r 361 ARTVTTSGRELDGAFNQLVFRHS 383 (502)
Q Consensus 361 a~~~~~~vR~Legal~~l~~~~~ 383 (502)
+....|++|- |+|.|-+++.
T Consensus 302 ~~~s~GDIRs---AInsLQlsss 321 (634)
T KOG1970 302 CQGSGGDIRS---AINSLQLSSS 321 (634)
T ss_pred HHHCCCCHHH---HHHHHHHHCC
T ss_conf 8752773999---9877533203
No 247
>PTZ00293 thymidine kinase; Provisional
Probab=95.93 E-value=0.0041 Score=42.18 Aligned_cols=90 Identities=20% Similarity=0.280 Sum_probs=59.0
Q ss_pred EEECCCCCCHH-HHHHHHHHHHHHHCCCCCEEEEEHHH---HHHH--------HHHHH-HCCCHHHHHHHHHHCCHHHHH
Q ss_conf 98627888857-99999999998630688168646988---8999--------99998-619889999997403102054
Q gi|254780627|r 200 FIHASVGLGKT-HLLQAIANASIKRQPNLRVVYLTAEY---FMWR--------FASAI-RDNCALNLKDSLRNIDLLLID 266 (502)
Q Consensus 200 fi~G~~GlGKT-HLl~ai~~~~~~~~~~~~v~y~~~e~---F~~~--------~~~a~-~~~~~~~fr~~~r~~DvLliD 266 (502)
.|.|+--.||| .|++-+-.+... +.+++-+.... +..+ .+.+. .-..+.++++.+.++||..||
T Consensus 8 VI~GPMFSGKTTELIRRlrR~~ia---~kkvlVIK~a~DtRY~~~~V~THD~~~i~a~~~v~~L~ei~~~~~~~DVIgID 84 (284)
T PTZ00293 8 LIIGPMFAGKTTELMRRVKREIHA---RRSCFVIKYSKDTRYDEHNVASHDQLMLRAQAAVSQLTEVRDTWKRFDVLAID 84 (284)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHC---CCEEEEECCCCCCCCCCCCEECCCCCEEECCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 998072378059999999999977---97399981898887899855678997351200140699998775358889997
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 44453175069999999999885698799964
Q gi|254780627|r 267 DMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAA 298 (502)
Q Consensus 267 Diqfl~gk~tqee~f~~~n~l~~~gkqiv~ts 298 (502)
..|||. .+....+.+.+.||.||+++
T Consensus 85 EaQFF~------DLvdf~e~lAn~GK~VIVAG 110 (284)
T PTZ00293 85 EGQFFS------DLVDFCNTAADAGKVVMVSA 110 (284)
T ss_pred CHHCCC------CHHHHHHHHHHCCCEEEEEE
T ss_conf 034162------38999999986899899994
No 248
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.93 E-value=0.1 Score=32.16 Aligned_cols=235 Identities=14% Similarity=0.151 Sum_probs=118.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCC--------------------------
Q ss_conf 554898627888857999999999986306881686469888999999986198--------------------------
Q gi|254780627|r 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC-------------------------- 249 (502)
Q Consensus 196 ~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~-------------------------- 249 (502)
.++..|.|++|.|||-|-.-...+-.++. +.+++|+|-++--.+++..++.-.
T Consensus 24 g~~~LV~G~pGsGKTtla~QfL~~Ga~~~-GE~~lyitl~E~~~~l~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~~~~~ 102 (501)
T PRK09302 24 GRPTLVSGTAGTGKTLFALQFLHNGIKSF-GEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSEQEE 102 (501)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 97799983899999999999999998855-99789998579999999999984998689732683899961567431113
Q ss_pred -----HHHHHHHH----H--HCCHHHHHHHHHHC---C-C-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHH----CCCC
Q ss_conf -----89999997----4--03102054444531---7-5-0699999999998856987999648756761----3630
Q gi|254780627|r 250 -----ALNLKDSL----R--NIDLLLIDDMQFLQ---G-K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL----ESLD 309 (502)
Q Consensus 250 -----~~~fr~~~----r--~~DvLliDDiqfl~---g-k-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l----~~l~ 309 (502)
++.+-+.. + +.+.+.||-+--+. . . ....+++..+..|...|-.+++|++...... .+++
T Consensus 103 ~~~~dL~~l~~~I~~~v~~~~~~RvViDSlt~l~~~~~~~~~~R~~l~~L~~~l~~~g~T~llt~E~~~~~~~~~~~g~E 182 (501)
T PRK09302 103 AGEYDLSALIERIEYAIRKIKAKRVVIDSIEALFQQYDNPAVVRRELFRLFAWLKQKGVTAVMTGERGDEYGPIARYGVE 182 (501)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHH
T ss_conf 34476899999999999971999999999789987635878999999999999987797799987566667875434524
Q ss_pred HHHHHHHHCCEEEEECCCCHHH---HHHHHHHHHHHHH-------HHCCCCCC-C--HHHH--HHHHHHCCCCHHHHHHH
Q ss_conf 3457653021157751588899---9999999998864-------31168978-9--8999--99985027888999999
Q gi|254780627|r 310 PRIRSRLQGGVSVPLGLHDYEM---RFSILKNRLAISQ-------KEDPKLNI-N--EEVL--MHVARTVTTSGRELDGA 374 (502)
Q Consensus 310 ~rL~SR~~~Gl~~~i~~Pd~e~---r~~Il~~k~~~~~-------~~~~~~~l-~--~~v~--~~la~~~~~~vR~Lega 374 (502)
+= ..-|++.-=..+..+. ++.|+|-+-..+. ....|+.+ | ..-+ .+-.+++++-|-+|...
T Consensus 183 e~----vaDGVI~L~~~~~~~~~~R~L~V~KmRGs~~~~g~h~f~It~~Gi~V~P~~~~~~~~~~~~~rv~tGi~~LD~l 258 (501)
T PRK09302 183 EF----VSDCVVILRNVLEGEKRTRTLEILKYRGTTHGKGEYPFTITEDGISVLPLTAMRLTQRSSNERISSGVPDLDEM 258 (501)
T ss_pred HH----HCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 42----01307887654148852589999983588666872337987998899803624335666520004797327887
Q ss_pred HHH-HHHHHH--HCCCC---CHHHHHHHHHHHHCCCCCC-----CCCHHHHHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 999-999863--02468---7788999998763037887-----57989999999998099999940888774
Q gi|254780627|r 375 FNQ-LVFRHS--FAPIL---TAEIADELLSHLVNTGETK-----KMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 (502)
Q Consensus 375 l~~-l~~~~~--~~~~~---~~~~~~~~l~~~~~~~~~~-----~i~~~~I~~~V~~~~~i~~~~l~s~~R~~ 436 (502)
+.. +..-+. +.++. .--++-..+..-...+++. .=+++.+... |+.+|++...+..+.+-+
T Consensus 259 lgGGl~~GsstLi~Gp~GtGKTtla~qFl~~~a~~GE~~l~~~FeE~~~~l~~~-a~~~G~dl~~~~~~G~l~ 330 (501)
T PRK09302 259 CGGGFFRGSIILVSGATGTGKTLLVSKFAEAACRRGERCLLFAFEESRAQLVRN-ATSWGIDLEEMERKGLLK 330 (501)
T ss_pred HCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHH-HHHCCCCHHHHHHCCCEE
T ss_conf 259975894699988999888999999999998659908999996799999999-997399848887489479
No 249
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.89 E-value=0.14 Score=31.34 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=22.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf 8986278888579999999999863068816864698
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e 235 (502)
+.+.+++|.|||--.-....+...+.+..+++++..-
T Consensus 3 ~lv~~ptGsGKT~~~~~~~~~~~~~~~~~~~lil~Pt 39 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPT 39 (144)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 9998899717999999999999975689769997467
No 250
>PRK08233 hypothetical protein; Provisional
Probab=95.88 E-value=0.18 Score=30.45 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=27.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH
Q ss_conf 898627888857999999999986306881686469888
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F 237 (502)
+=|-|+||.|||.|.+++.+++ |+..++|.....+
T Consensus 6 IgIaGgSgSGKTtla~~l~~~l----~~~~~~~~D~y~~ 40 (182)
T PRK08233 6 ITIAAVSGGGKTTLTERLTHKL----KNSKALYFDRYDF 40 (182)
T ss_pred EEEECCCCCCHHHHHHHHHHHC----CCCEEEEECCCCC
T ss_conf 9996888678999999999974----6775899666555
No 251
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.87 E-value=0.075 Score=33.18 Aligned_cols=146 Identities=18% Similarity=0.160 Sum_probs=86.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCC------------------CCEEEEEHHHHHHHHHHHHHCCCHHHHHHH---
Q ss_conf 48986278888579999999999863068------------------816864698889999999861988999999---
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPN------------------LRVVYLTAEYFMWRFASAIRDNCALNLKDS--- 256 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~------------------~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~--- 256 (502)
-..++||.|.|||-+..+.+-.+.-.+|+ --|.++.+|.= .++-..+.++.+.
T Consensus 41 AyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~~~cg~C~~C~~i~~g~hpDv~~i~p~~~------~i~id~iR~l~~~~~~ 114 (395)
T PRK07940 41 AWLFTGPPGSGRSNAARAFAAALQCTDPGVPGCGECRACRTVLAGTHPDVRVVVPEGL------SIGVDEVREIVQIAAR 114 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCC------CCCHHHHHHHHHHHHH
T ss_conf 3763689987889999999999669999999998787899987689987189826877------6889999999999852
Q ss_pred --HH-HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHH
Q ss_conf --74-031020544445317506999999999988569879996487567613630345765302115775158889999
Q gi|254780627|r 257 --LR-NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 (502)
Q Consensus 257 --~r-~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~ 333 (502)
++ ..-|.+|||.|.+. ..+++-|+-|+.+=-.. --+|+++.. |. .+-+-++||. -.+...+|+.+.-.
T Consensus 115 ~p~~~~~kv~ii~~a~~m~-~~a~NalLKtLEEPp~~-~~fiL~t~~-~~---~llpTI~SRc---q~~~f~~~~~~~i~ 185 (395)
T PRK07940 115 RPTTGRWRIVVIEDADRLT-ERAANALLKAVEEPPPR-TVWLLCAPS-VE---DVLPTIRSRC---RHVALRTPSVEAVA 185 (395)
T ss_pred CCCCCCCEEEEEECHHHHC-HHHHHHHHHHHCCCCCC-EEEEEEECC-HH---HHHHHHHHHH---EECCCCCCCHHHHH
T ss_conf 7303795599980778748-99999999852178888-699987399-78---7446887440---00237999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCH
Q ss_conf 99999998864311689789899999985027888
Q gi|254780627|r 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 (502)
Q Consensus 334 ~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~v 368 (502)
.+|..+ ..++++....+|.-..|++
T Consensus 186 ~~L~~~----------~gi~~~~A~~aA~~s~G~i 210 (395)
T PRK07940 186 DVLVRR----------DGVDPETAQWAARASGGHI 210 (395)
T ss_pred HHHHHC----------CCCCHHHHHHHHHHHCCCH
T ss_conf 999870----------1999899999999808988
No 252
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.82 E-value=0.019 Score=37.41 Aligned_cols=138 Identities=15% Similarity=0.149 Sum_probs=73.2
Q ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHH
Q ss_conf 44788763288614789999999982410013655555489862788885799999999998630688168646988899
Q gi|254780627|r 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 (502)
Q Consensus 160 pryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~ 239 (502)
..+|.|.+|....=--..+.-..-|-.-+. ..+|-|++|.|||.||+|+..++.+..|+-|++-+ |+ +.
T Consensus 116 ~~~tl~dlv~~g~~t~~~~~~L~~aV~~r~--------nilVsGgTGSGKTTllnaL~~~i~~~~p~eRivtI--ED-t~ 184 (323)
T PRK13833 116 RLIPLDDYVRSKVMTEAQASTIRSAISSRL--------NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVIL--ED-TA 184 (323)
T ss_pred CCCCHHHHHHCCCCCHHHHHHHHHHHHCCC--------CEEEECCCCCCHHHHHHHHHHHHCCCCCHHEEEEE--CC-CC
T ss_conf 999999998769999999999999998189--------68999177775689999999864028932339994--57-50
Q ss_pred HHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHC
Q ss_conf 999998619889999997403102054444531750-6999999999988569879996487567613630345765302
Q gi|254780627|r 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 (502)
Q Consensus 240 ~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~ 318 (502)
|+ +-.-.++ +++..... +...|+ =.+|..+-..||+.=-|-+..+. |-.-+-|=-.+
T Consensus 185 EL------------~~~~~n~-------v~l~~~~~v~~~~Ll--~~aLRmrPDRIivGEvRG~EA~~-~L~A~nTGH~G 242 (323)
T PRK13833 185 EI------------QCAAENA-------VLLHTSDTVDMARLL--KSTMRLRPDRIIVGEVRDGAALT-LLKAWNTGHPG 242 (323)
T ss_pred CC------------CCCCCCE-------EEEECCCCCCHHHHH--HHHHCCCCCEEEEECCCCHHHHH-HHHHHHCCCCC
T ss_conf 11------------4678877-------787516986999999--99744699758883006599999-99998279998
Q ss_pred CEEEEECCCCHHH
Q ss_conf 1157751588899
Q gi|254780627|r 319 GVSVPLGLHDYEM 331 (502)
Q Consensus 319 Gl~~~i~~Pd~e~ 331 (502)
|+ +.|+.-+-..
T Consensus 243 s~-tTiHAnsa~~ 254 (323)
T PRK13833 243 GV-TTIHSNTAMS 254 (323)
T ss_pred CC-CCCCCCCHHH
T ss_conf 63-4865799999
No 253
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=95.81 E-value=0.17 Score=30.70 Aligned_cols=35 Identities=26% Similarity=0.523 Sum_probs=26.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHC-CC-CCEEEEE
Q ss_conf 89862788885799999999998630-68-8168646
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQ-PN-LRVVYLT 233 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~-~~-~~v~y~~ 233 (502)
+.|.|.+|.|||.+|+++-..+...+ |+ .+++.+.
T Consensus 41 ~Lv~G~tGsGKS~~l~~li~sl~~~~~p~~v~l~liD 77 (202)
T pfam01580 41 LLIAGATGSGKSTFLNTLILSLAARHSPEEVRLYLID 77 (202)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 8996589998009999999999873796206999974
No 254
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.79 E-value=0.015 Score=38.23 Aligned_cols=99 Identities=22% Similarity=0.320 Sum_probs=63.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH--------HHH--HHHHHHCC---CHHHHHHHHHHCCHHHH
Q ss_conf 898627888857999999999986306881686469888--------999--99998619---88999999740310205
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF--------MWR--FASAIRDN---CALNLKDSLRNIDLLLI 265 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F--------~~~--~~~a~~~~---~~~~fr~~~r~~DvLli 265 (502)
+.|-|++|.|||-|+.+++...... .-. +++...+. .+. |+..+..+ .+.--+.-..+.++|++
T Consensus 28 ~~i~G~nGaGKSTLl~~l~gl~~~~--~G~-i~~~g~~~~~~~~~~~~~~i~~v~QLSgGqkqrv~iA~al~~~p~ilil 104 (157)
T cd00267 28 VALVGPNGSGKSTLLRAIAGLLKPT--SGE-ILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCC--CCE-EEECCEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9998788999899999995884799--628-9999999997999999940608766886999999999999709999999
Q ss_pred HHHHHHCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf 444453175--0699999999998856987999648756
Q gi|254780627|r 266 DDMQFLQGK--LIQHEFCHLLNSLLDSAKQVVAAADRPP 302 (502)
Q Consensus 266 DDiqfl~gk--~tqee~f~~~n~l~~~gkqiv~tsd~~P 302 (502)
|.. .+|= .++.++...+..+.+.|+.+|+++-...
T Consensus 105 DEP--tsgLD~~~~~~l~~~i~~l~~~g~tii~vtH~~~ 141 (157)
T cd00267 105 DEP--TSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141 (157)
T ss_pred ECC--CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 698--7668999999999999999968999999908999
No 255
>TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113 This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation.
Probab=95.78 E-value=0.051 Score=34.36 Aligned_cols=301 Identities=16% Similarity=0.187 Sum_probs=171.5
Q ss_pred HHHHHHHHHCCHHH--HHHHCC-CEE-EEEEECCEEEEEE----CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 99999998669788--974302-405-7885399898983----898999999998999999999986277665078972
Q gi|254780627|r 41 IVSSRLKNQVGPDV--YASWFQ-RLK-FHSVLHNIVHLSV----PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR 112 (502)
Q Consensus 41 ~il~~Lk~~l~~~~--F~tWi~-pL~-~i~~e~~~L~L~v----Pn~FikdwIe~~Y~~~I~~al~~~~g~~~~I~i~i~ 112 (502)
..+..++..+++.. -=++|. |++ +....-|+|.+.. |+++..+. +.||++.....+.+.---...+.. ..
T Consensus 101 lF~d~~~~~l~~~~e~~~~FIgVPi~~~d~~~~GvL~~~r~~~g~~~~~~~~-~vRFL~mVANL~gQtvRL~r~~~~-~~ 178 (574)
T TIGR01817 101 LFLDRLSEVLSDPGEIPVPFIGVPIKNADSETIGVLAIDRIKEGASRERLEE-EVRFLEMVANLIGQTVRLHRLVAA-RR 178 (574)
T ss_pred HHHHHHHHHHCCCCCEECCEEECCCCCCCCCCCEEEEEEECCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_conf 4577645540588743111340226677777112267720688884134614-543799999999878887445654-20
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHH--HHHHHHHHHCCCCC
Q ss_conf 1455555555566554444753322322212355444454344557644788763288614789--99999998241001
Q gi|254780627|r 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVA--LTAAQSIAEVDSHG 190 (502)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~s~LNpryTFDnFVVG~sN~lA--~aAAkaVAe~pg~~ 190 (502)
......... ... .- ..+........-+.++.+.+-|+|+|--|= ++-++.||...
T Consensus 179 ------~~~~~e~~~-~~~----~~---------~~~~sGa~~~~~~~~~~~~~~i~G~Spam~~v~~~~~~vA~~n--- 235 (574)
T TIGR01817 179 ------ERLIAEAAQ-LSK----QL---------RDKKSGAEPEAARRRSGKEDGIVGKSPAMRQVVDQIKVVARSN--- 235 (574)
T ss_pred ------HHHHHHHHH-HHH----HH---------CCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC---
T ss_conf ------110556777-887----52---------1400156554123312344740124789999998865201317---
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHH--HHHCCCCCEEE-------EEHHHHHHH---HHHHHHCCCHHHHHHHHH
Q ss_conf 365555548986278888579999999999--86306881686-------469888999---999986198899999974
Q gi|254780627|r 191 YTTVRLNPLFIHASVGLGKTHLLQAIANAS--IKRQPNLRVVY-------LTAEYFMWR---FASAIRDNCALNLKDSLR 258 (502)
Q Consensus 191 ~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~--~~~~~~~~v~y-------~~~e~F~~~---~~~a~~~~~~~~fr~~~r 258 (502)
--..+=|.||+||==.-.|| ||. +++.|=.|+=| +=+|-|-.| |+=|+..++ =+|-
T Consensus 236 ------STVLlRGESGTGKEl~A~AI-H~~SpR~~~PFVK~NCAALse~lLESELFGHEKGAFTGA~~~Rk-----GRFE 303 (574)
T TIGR01817 236 ------STVLLRGESGTGKELIAKAI-HELSPRAKRPFVKLNCAALSETLLESELFGHEKGAFTGAVAQRK-----GRFE 303 (574)
T ss_pred ------CEEEEECCCCCCHHHHHHHH-CCCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHCC-----CCEE
T ss_conf ------66785056574433444234-04664557885450064477611245451343014688875177-----7533
Q ss_pred HC--CHHHHHHHHHH----CCC--C-HHHHHHHHHHHHHHC--------CCEEEEECCCCHHHH---CCCCHHHHHHHHC
Q ss_conf 03--10205444453----175--0-699999999998856--------987999648756761---3630345765302
Q gi|254780627|r 259 NI--DLLLIDDMQFL----QGK--L-IQHEFCHLLNSLLDS--------AKQVVAAADRPPSEL---ESLDPRIRSRLQG 318 (502)
Q Consensus 259 ~~--DvLliDDiqfl----~gk--~-tqee~f~~~n~l~~~--------gkqiv~tsd~~P~~l---~~l~~rL~SR~~~ 318 (502)
-+ -=|++|-|=.+ +-| + -|| -+|-.= +=+||.+..|.-.+= ..|=+=|.=|++
T Consensus 304 lAdGGTLFLDEIGEISPaFQAKLLRVLQE------GEFERVGG~~TlKVdVRlvaATNrdLE~aV~~GeFRaDLYYRin- 376 (574)
T TIGR01817 304 LADGGTLFLDEIGEISPAFQAKLLRVLQE------GEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRIN- 376 (574)
T ss_pred ECCCCCCCCCCCCCCCHHHHHHHHHHHHC------CCEEEECCCEEEEEEEEEEECCCCCHHHHHHCCCCCCHHHHHHH-
T ss_conf 02788320000146785688899887521------00253278724887367886137355889727897302355442-
Q ss_pred CEEEEECCC-------CHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 115775158-------8899999999999886431168-9789899999985-027888999999999999863024687
Q gi|254780627|r 319 GVSVPLGLH-------DYEMRFSILKNRLAISQKEDPK-LNINEEVLMHVAR-TVTTSGRELDGAFNQLVFRHSFAPILT 389 (502)
Q Consensus 319 Gl~~~i~~P-------d~e~r~~Il~~k~~~~~~~~~~-~~l~~~v~~~la~-~~~~~vR~Legal~~l~~~~~~~~~~~ 389 (502)
||+|--| |...=.+-+-.|+... ..+. +.|++.+++.|.+ .+.|||||||=||-|=...+. +..||
T Consensus 377 --VvPl~lPPLRER~~DIP~LA~~fL~kf~~e--n~R~mL~~~~~Ai~~Lm~c~wPGNVRELENC~eRtAtLs~-~~~It 451 (574)
T TIGR01817 377 --VVPLILPPLRERREDIPLLAEAFLEKFNRE--NGRPMLTLSPSAIRVLMSCKWPGNVRELENCVERTATLSR-SGTIT 451 (574)
T ss_pred --HHHHHCCCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEECHHHHHHHHCCCCCCCCEEHHHHHHHHHHHCC-CCCCC
T ss_conf --223407877787311689999999987665--1872032267899897517899974004437877875416-88516
Q ss_pred H
Q ss_conf 7
Q gi|254780627|r 390 A 390 (502)
Q Consensus 390 ~ 390 (502)
.
T Consensus 452 ~ 452 (574)
T TIGR01817 452 R 452 (574)
T ss_pred C
T ss_conf 4
No 256
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.76 E-value=0.021 Score=37.04 Aligned_cols=92 Identities=14% Similarity=0.127 Sum_probs=53.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHHH----HCCCCCEEEEEHHH-HHHHHHHHHHC---CCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 98627888857999999999986----30688168646988-89999999861---988999999740310205444453
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIK----RQPNLRVVYLTAEY-FMWRFASAIRD---NCALNLKDSLRNIDLLLIDDMQFL 271 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~----~~~~~~v~y~~~e~-F~~~~~~a~~~---~~~~~fr~~~r~~DvLliDDiqfl 271 (502)
=|||++|.|||+|.|-++-.+.- -.-+.+|+|+.+|. |.-+=+..+-. -+.++ ++|.|...
T Consensus 107 Ei~Ge~gsGKTQlc~qLav~~qlp~~~GGl~g~vvYIDTEgtF~peRi~qia~~~g~d~~~-----------~L~nI~v~ 175 (318)
T PRK04301 107 EFYGEFGSGKTQICHQLAVNVQLPEEEGGLEGKAVYIDTENTFRPERIEQMAEGLGLDPDE-----------VLDNIHVA 175 (318)
T ss_pred EEECCCCCCCHHHHHHHHHHEECCHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCHHH-----------HHHCEEEE
T ss_conf 8866887870356677676533767778988637999568986979999999984999789-----------86402686
Q ss_pred CCC--CHHHHHHHHHHHHHHCCC---EEEEECCCCH
Q ss_conf 175--069999999999885698---7999648756
Q gi|254780627|r 272 QGK--LIQHEFCHLLNSLLDSAK---QVVAAADRPP 302 (502)
Q Consensus 272 ~gk--~tqee~f~~~n~l~~~gk---qiv~tsd~~P 302 (502)
.-- ..|.++......+...+. -||+-|-..+
T Consensus 176 r~~~~~~q~~~~~~~~~~~~~~~~v~LvVvDSi~al 211 (318)
T PRK04301 176 RAYNSDHQMLLAEKAEELIKEGNNIKLVIVDSLTAH 211 (318)
T ss_pred ECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH
T ss_conf 139989999999999999962788049999434232
No 257
>pfam00265 TK Thymidine kinase.
Probab=95.75 E-value=0.021 Score=37.11 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=54.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHH---H-HH-------HHH--HCCCHHHHHH-HHHHCCHHHH
Q ss_conf 9862788885799999999998630688168646988899---9-99-------998--6198899999-9740310205
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW---R-FA-------SAI--RDNCALNLKD-SLRNIDLLLI 265 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~---~-~~-------~a~--~~~~~~~fr~-~~r~~DvLli 265 (502)
+|.||-..|||.-|-...+..... +.+|+.++.+.=++ . ++ .+. .........+ ...++|+.+|
T Consensus 5 ~i~GpMfsGKTteLi~~~~~~~~~--gkkvl~i~p~~D~R~~~~~i~Sh~g~~~~~~~~~~~~~~~~~~~~~~~~dvI~I 82 (175)
T pfam00265 5 LIIGPMFSGKSTELIRRVYRYQLA--QYKCVVIKYAIDNRYGTGKVVTHDGISMEAKLIKTSLLDDIKDIISNTIHVVGI 82 (175)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHC--CCEEEEEEECCCCCCCCCEEECCCCCCCCCEECCCCHHHHHHHHHCCCCCEEEE
T ss_conf 999251778999999999999987--993999946112778999698899981145673653199999864368789998
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 444453175069999999999885698799964
Q gi|254780627|r 266 DDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAA 298 (502)
Q Consensus 266 DDiqfl~gk~tqee~f~~~n~l~~~gkqiv~ts 298 (502)
|..|||. .+......+.+.|+.|++++
T Consensus 83 DEaQFf~------~l~~~~~~~~~~~~~Viv~G 109 (175)
T pfam00265 83 DEAQFFD------DIVEFCETMANLGKIVIVAG 109 (175)
T ss_pred EHHHHHH------HHHHHHHHHHHCCCEEEEEE
T ss_conf 3377526------48999999996799499987
No 258
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.75 E-value=0.027 Score=36.35 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=62.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCC---CEEEEEHHHHHHHHHHHHHCC----------CHHHHHHHHHHCCHHHH
Q ss_conf 89862788885799999999998630688---168646988899999998619----------88999999740310205
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNL---RVVYLTAEYFMWRFASAIRDN----------CALNLKDSLRNIDLLLI 265 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~---~v~y~~~e~F~~~~~~a~~~~----------~~~~fr~~~r~~DvLli 265 (502)
+.|.||||.|||.|++.+ .+..|.. .+-|+|= .-|.+ +.++|.+...+-..+--
T Consensus 2 ivi~GPSG~GK~tl~~~L----~~~~~~~~~~~vs~TTR---------~~r~~E~~G~dY~Fvs~~~F~~~i~~g~f~E~ 68 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRL----LEEFDPNFGFSVSHTTR---------KPRPGEVDGVDYHFVSKEEFERLIENGEFLEW 68 (137)
T ss_pred EEEECCCCCCHHHHHHHH----HHCCCCCEEEEEEEECC---------CCCCCCCCCCEEEEECHHHHHHHHHCCEEEEE
T ss_conf 999999988999999999----85198776875660378---------99888778967898679999999866914999
Q ss_pred HHHHHHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHH
Q ss_conf 444453175-069999999999885698799964875676136303457653021157751588899999999
Q gi|254780627|r 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 (502)
Q Consensus 266 DDiqfl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~ 337 (502)
- +..... .|. ...++...++|+.+|+.-|. + |+.. |+.-+....++=|.|||++.--..|+
T Consensus 69 ~--~~~g~~YGt~---~~~I~~~~~~G~~vil~id~--~---g~~~-lk~~~~~~~~IFI~PP~~~i~~~~~~ 130 (137)
T cd00071 69 A--EFHGNYYGTS---KAAVEEALAEGKIVILEIDV--Q---GARQ-VKKSYPDAVSIFILPPDYVIVNDDLE 130 (137)
T ss_pred E--EECCCCCCCC---HHHHHHHHHCCCEEEEEEEH--H---HHHH-HHHCCCCEEEEEEECCCHHHHHHHHH
T ss_conf 9--9988066278---99999999639949999748--9---9999-99709981999997909689999999
No 259
>TIGR02773 addB_Gpos ATP-dependent nuclease subunit B; InterPro: IPR014140 DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in others. AddA is conserved between the firmicutes and the alphaproteobacteria, while its partner protein (RexB) is not. This entry describes the ATP-dependent nuclease subunit B (AddB/RexB) protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous and functionally equivalent, merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function..
Probab=95.71 E-value=0.0097 Score=39.49 Aligned_cols=252 Identities=17% Similarity=0.268 Sum_probs=133.2
Q ss_pred EEECCCCCCHHHH-HHHHHHHHHHHCC-CCCEEEEEHHHHHHHH----HHHHHCCC-----HHHHHH-------------
Q ss_conf 9862788885799-9999999986306-8816864698889999----99986198-----899999-------------
Q gi|254780627|r 200 FIHASVGLGKTHL-LQAIANASIKRQP-NLRVVYLTAEYFMWRF----ASAIRDNC-----ALNLKD------------- 255 (502)
Q Consensus 200 fi~G~~GlGKTHL-l~ai~~~~~~~~~-~~~v~y~~~e~F~~~~----~~a~~~~~-----~~~fr~------------- 255 (502)
||||-+|.||||+ |.-|-..+ +.+| +..++|+-.|+||=++ ++..-.+. +-.|++
T Consensus 5 ~i~GRaGtGKs~~~i~~Ik~ki-~~~p~g~~iillVPdQ~TFq~E~~l~~~~e~~g~lraqvlSF~RLA~rVlqE~GG~t 83 (1192)
T TIGR02773 5 FIYGRAGTGKSTFIIDEIKQKI-KENPLGKPIILLVPDQMTFQMEKALLNDIELNGSLRAQVLSFSRLAWRVLQETGGLT 83 (1192)
T ss_pred EEEECCCCCHHHHHHHHHHHHH-HCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCH
T ss_conf 9983268754578889999997-107898953787688524899999816777687444113204476556876337602
Q ss_pred --HH--HHCCHHHHHHHHHHCCC------C-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHH---HHHCCEE
Q ss_conf --97--40310205444453175------0-699999999998856987999648756761363034576---5302115
Q gi|254780627|r 256 --SL--RNIDLLLIDDMQFLQGK------L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS---RLQGGVS 321 (502)
Q Consensus 256 --~~--r~~DvLliDDiqfl~gk------~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~S---R~~~Gl~ 321 (502)
+. -.+.+||-+=|+--.++ + .|.-|..-+..++..=|+== -.|.+|......+.. |=..||.
T Consensus 84 r~~l~~~G~~M~i~K~~ee~k~~lkvy~~A~~~~GF~~~l~~~itEfKry~----v~pe~L~~~~~~~~~~~~~~~~~l~ 159 (1192)
T TIGR02773 84 RQFLTQAGIEMLIRKVIEEHKDELKVYQKASRKKGFLAKLSEMITEFKRYE----VTPEDLRKAAEELEDSERRSERVLK 159 (1192)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 677988758999999998601112478886232534899999988762206----8988999998610132024416677
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHH-----------------HHHHHHHHHH-
Q ss_conf 7751588899999999999886431168978989999998502788899999-----------------9999999863-
Q gi|254780627|r 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG-----------------AFNQLVFRHS- 383 (502)
Q Consensus 322 ~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Leg-----------------al~~l~~~~~- 383 (502)
-.++ |+ .++=.+.+.. ...++.=+||-+..|++++..+= .++| .+..|.-.|.
T Consensus 160 ~KL~--Dl----~~iY~~fe~~--L~~~y~~~ED~L~LL~~~l~~s~-~~~~AeiyIDGF~~Ftp~e~~Vi~~L~k~a~~ 230 (1192)
T TIGR02773 160 EKLE--DL----SLIYQEFEER--LADEYIDSEDQLNLLAEKLEQSE-LLKGAEIYIDGFTSFTPQEYSVIEKLMKKAKK 230 (1192)
T ss_pred HHHH--HH----HHHHHHHHHH--HCCCCCCCHHHHHHHHHHHHHHH-HHCCCEEEEECCCCCCHHHHHHHHHHHHHCCE
T ss_conf 6689--99----9999999998--70775773344889998721425-43585179835657677999999998531252
Q ss_pred HCCCCCHHHH--HHHHH--HHHCCCCCCCCCHHHHHHHHHHHHCCCHHH--HHCCCCCHHHCHHHHHHHHHHHHHCCCCH
Q ss_conf 0246877889--99998--763037887579899999999980999999--40888774014457999999998515687
Q gi|254780627|r 384 FAPILTAEIA--DELLS--HLVNTGETKKMRIEDIQRMVAKHYNISRND--LLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 (502)
Q Consensus 384 ~~~~~~~~~~--~~~l~--~~~~~~~~~~i~~~~I~~~V~~~~~i~~~~--l~s~~R~~~i~~~RqiamyL~r~~t~~s~ 457 (502)
..=.+|++-. ++... +++.. +-....-....|+.-||++++ +..+.|......-..+ .+|.+.+-..++
T Consensus 231 vtv~Lt~D~~~~~~~~de~~LF~~----t~~t~~~L~~la~~~gi~v~~~~~~~~~~~~RF~~~~~L-A~LE~~f~a~p~ 305 (1192)
T TIGR02773 231 VTVSLTLDEPEYKEEEDELDLFRA----TSETYYRLKELAKELGIEVEEPIFLNEERPNRFKKNKEL-AHLEKQFDARPF 305 (1192)
T ss_pred EEEEEECCCCCCCCCCCCHHHCCC----CHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHH-HHHHHHHHCCCC
T ss_conf 479985486110157885322258----678999999999874985010344213323311468548-999988401676
Q ss_pred HHHHHHHCCCCHHHHHH
Q ss_conf 89998847984379999
Q gi|254780627|r 458 PEIGRRFGDRDHTTVLH 474 (502)
Q Consensus 458 ~~IG~~fg~rdHsTV~~ 474 (502)
. .|-+++|+=-+|
T Consensus 306 ~----~y~~~~~~l~i~ 318 (1192)
T TIGR02773 306 K----AYKEKEKSLSIF 318 (1192)
T ss_pred C----CCCCCCCCCEEE
T ss_conf 6----766776562211
No 260
>KOG0729 consensus
Probab=95.71 E-value=0.033 Score=35.71 Aligned_cols=167 Identities=20% Similarity=0.325 Sum_probs=90.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHH--HCCHHHHHHHHHHCC---
Q ss_conf 898627888857999999999986306881686469888999999986198899999974--031020544445317---
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR--NIDLLLIDDMQFLQG--- 273 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r--~~DvLliDDiqfl~g--- 273 (502)
.++||++|.|||-+..|++|.. ++-.+-+-..+.+..|+-- ..+.+.++-+--| .+=++.+|.|.-+.|
T Consensus 214 vllyGPPGtGKTL~ARAVANRT-----dAcFIRViGSELVQKYvGE-GARMVRElFeMAr~KKACiiFFDEiDAiGGaRF 287 (435)
T KOG0729 214 VLLYGPPGTGKTLCARAVANRT-----DACFIRVIGSELVQKYVGE-GARMVRELFEMARTKKACIIFFDEIDAIGGARF 287 (435)
T ss_pred EEEECCCCCCHHHHHHHHHCCC-----CCEEEEEHHHHHHHHHHHH-HHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
T ss_conf 3786899986108999874566-----7458763118999998624-689999999985236527998410102267203
Q ss_pred ------C-CHHHHHHHHHHH---HHHCCCE-EEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf ------5-069999999999---8856987-9996487567613630345765302115775158889999999999988
Q gi|254780627|r 274 ------K-LIQHEFCHLLNS---LLDSAKQ-VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 (502)
Q Consensus 274 ------k-~tqee~f~~~n~---l~~~gkq-iv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~ 342 (502)
. ..|.-.+.++|. +--.|.- ++++..|| . .|++-|.--=.-.--|+..-||+|-|-.|++--+
T Consensus 288 DDg~ggDNEVQRTMLEli~QLDGFDpRGNIKVlmATNRP-d---tLDpALlRPGRlDRKVEF~LPDlegR~~I~kIHa-- 361 (435)
T KOG0729 288 DDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRP-D---TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHA-- 361 (435)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC-C---CCCHHHCCCCCCCCCEECCCCCCCCCCEEEEEEC--
T ss_conf 578887279999999999860377888875898634898-8---7687662876423112105876235512577741--
Q ss_pred HHHHCCCCCCCHHH-HHHHHHHCCCC-HHHHHHHHHHHHHHH
Q ss_conf 64311689789899-99998502788-899999999999986
Q gi|254780627|r 343 SQKEDPKLNINEEV-LMHVARTVTTS-GRELDGAFNQLVFRH 382 (502)
Q Consensus 343 ~~~~~~~~~l~~~v-~~~la~~~~~~-vR~Legal~~l~~~~ 382 (502)
..+.+..++ .+.||.-+.++ --+|.+..+.-..++
T Consensus 362 -----ksMsverdIR~eLlarLCpnsTGAeiRSVCtEAGMfA 398 (435)
T KOG0729 362 -----KSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA 398 (435)
T ss_pred -----CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf -----1144232216999986588974257888887743788
No 261
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.69 E-value=0.065 Score=33.61 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 89862788885799999999998
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASI 221 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~ 221 (502)
+-|.|+.|.|||-||.+|..-+.
T Consensus 31 ~~l~G~NGaGKTTLlk~i~Gl~~ 53 (206)
T PRK13539 31 LVLTGPNGSGKTTLLRLLAGLLP 53 (206)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999989999999958878
No 262
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.69 E-value=0.037 Score=35.35 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 898627888857999999999986
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIK 222 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~ 222 (502)
+=|-|++|.|||-|++.|+..+..
T Consensus 29 ~gLiGpNGaGKSTLlk~i~Gll~P 52 (255)
T cd03236 29 LGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 999899997099999999679868
No 263
>PRK09519 recA recombinase A; Reviewed
Probab=95.68 E-value=0.13 Score=31.53 Aligned_cols=11 Identities=18% Similarity=0.365 Sum_probs=4.2
Q ss_pred HHCCHHHHHHH
Q ss_conf 86169999999
Q gi|254780627|r 483 LETDITLKKEV 493 (502)
Q Consensus 483 ~~~d~~~~~~i 493 (502)
+..|+....+|
T Consensus 750 L~~N~d~AdEI 760 (790)
T PRK09519 750 LVENADVADEI 760 (790)
T ss_pred HHHCHHHHHHH
T ss_conf 77490377999
No 264
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.66 E-value=0.01 Score=39.28 Aligned_cols=25 Identities=36% Similarity=0.392 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8986278888579999999999863
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKR 223 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~ 223 (502)
+-|.|++|.|||-||..|..-+...
T Consensus 29 ~~l~G~NGsGKSTLlk~i~Gl~~p~ 53 (201)
T cd03231 29 LQVTGPNGSGKTTLLRILAGLSPPL 53 (201)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 9999999999999999996677888
No 265
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.64 E-value=0.014 Score=38.45 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=47.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHH-HHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHH
Q ss_conf 89862788885799999999998630688168646988-89999999861988999999740310205444453175069
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY-FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQ 277 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~-F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~tq 277 (502)
.=|||+.|.|||-|.+.+.-.. +.|+.+++|+++|. |--+++..+..+. +|.+-.. -..+-
T Consensus 63 tEiyG~~gsGKT~lal~~~~~a--q~~g~~a~fIDtE~~l~p~r~~~l~~~~---------------~d~l~v~-~~~~~ 124 (279)
T COG0468 63 TEIYGPESSGKTTLALQLVANA--QKPGGKAAFIDTEHALDPERAKQLGVDL---------------LDNLLVS-QPDTG 124 (279)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--HCCCCEEEEEECCCCCCHHHHHHHHHHH---------------HCCEEEE-CCCCH
T ss_conf 9984688765466899998886--5379808999589998999999988754---------------2153686-68977
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 999999999885698
Q gi|254780627|r 278 HEFCHLLNSLLDSAK 292 (502)
Q Consensus 278 ee~f~~~n~l~~~gk 292 (502)
++-.++++.+...+.
T Consensus 125 e~q~~i~~~~~~~~~ 139 (279)
T COG0468 125 EQQLEIAEKLARSGA 139 (279)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999987546
No 266
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.58 E-value=0.019 Score=37.40 Aligned_cols=33 Identities=39% Similarity=0.523 Sum_probs=30.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 986278888579999999999863068816864
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~ 232 (502)
.|.+|++.|||.|||.|+|.+..+||+..++-+
T Consensus 136 LIVAPPkaGKT~LLq~IA~aI~~NhPev~livL 168 (379)
T PRK12608 136 LIVAPPRAGKTILLQQIAQAVAANHPDIHLMVL 168 (379)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 274589865789999999999857998489999
No 267
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.58 E-value=0.13 Score=31.52 Aligned_cols=116 Identities=15% Similarity=0.170 Sum_probs=68.8
Q ss_pred HHHCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHH
Q ss_conf 740310205444453175--069999999999885698799964875676136303457653021157751588899999
Q gi|254780627|r 257 LRNIDLLLIDDMQFLQGK--LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 (502)
Q Consensus 257 ~r~~DvLliDDiqfl~gk--~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~ 334 (502)
..+-++|++|. =.+|= ..+++++.++..|.++|+.||+++- ...+...+-+|++= +..|=++.-.+|..=+...
T Consensus 154 ~~~P~lliLDE--PtagLDp~~~~~l~~~l~~L~~~G~Tvi~vtH-dl~~~~~~aDrviv-l~~G~Iv~~Gtp~~~~~~~ 229 (273)
T PRK13647 154 AMEPDIIVLDE--PMAYLDPRGKEELTAILNRLNNEGKTVIVATH-DVDLALEWADQVVV-LNAGRVVAQGDKSILTDRQ 229 (273)
T ss_pred HHCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC-CHHHHHHHCCEEEE-EECCEEEEECCHHHHCCHH
T ss_conf 81999999979--76579999999999999999848999999941-78999996999999-9899999982947939999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 9999998864311689789899999985027888999999999999863024687788999998763
Q gi|254780627|r 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 (502)
Q Consensus 335 Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~ 401 (502)
+|++ .++..|.- -.++.. | ..+ ...+=+.|++-+.+.++.++
T Consensus 230 ~l~~---------~gl~~P~~--~~~~~~-------l----~~~---~~~~~p~~~~~~~~~~~~~~ 271 (273)
T PRK13647 230 LLEE---------AGLKAPLL--VQIFED-------F----EEL---YKLGIPTNLKDARQIIRKFL 271 (273)
T ss_pred HHHH---------CCCCCCHH--HHHHHH-------H----HHH---HCCCCCCCHHHHHHHHHHHH
T ss_conf 9998---------69999879--999999-------8----886---15899987999999999985
No 268
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=95.55 E-value=0.0035 Score=42.66 Aligned_cols=84 Identities=14% Similarity=0.190 Sum_probs=45.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHH--HHCCCH-HHHHHHHHHCCHHHHHHHHHHCCCC
Q ss_conf 8986278888579999999999863068816864698889999999--861988-9999997403102054444531750
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA--IRDNCA-LNLKDSLRNIDLLLIDDMQFLQGKL 275 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a--~~~~~~-~~fr~~~r~~DvLliDDiqfl~gk~ 275 (502)
++|+|++|+|||.|..+++...-.. -.+|- ++.+-...+++-. ...++. ..|+.-.--..+|++|.|.... .+
T Consensus 2 VLL~GppG~GKT~l~~~lA~~~~~~--~~~i~-~~~~~~~~Dl~G~~~~~~~~~~~~~~~G~l~~~vl~lDEin~a~-~~ 77 (131)
T pfam07726 2 VLLEGVPGLAKTLLARTLARSLGLD--FRRIQ-FTPDLLPSDITGTEVYDQKTREFEFRPGPIFANVLLADEINRAP-PK 77 (131)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCC--CEEEE-ECCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCEEEEHHHCCC-HH
T ss_conf 8789899876999999999995998--16888-33776700036845423787408984573103705640120399-89
Q ss_pred HHHHHHHHHHH
Q ss_conf 69999999999
Q gi|254780627|r 276 IQHEFCHLLNS 286 (502)
Q Consensus 276 tqee~f~~~n~ 286 (502)
+|.-|+..+++
T Consensus 78 v~~~Ll~~l~e 88 (131)
T pfam07726 78 TQSALLEAMQE 88 (131)
T ss_pred HHHHHHHHHHC
T ss_conf 99999976326
No 269
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.52 E-value=0.25 Score=29.53 Aligned_cols=200 Identities=20% Similarity=0.162 Sum_probs=108.6
Q ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH-
Q ss_conf 5764478876328861478999999998241001365555548986278888579999999999863068816864698-
Q gi|254780627|r 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE- 235 (502)
Q Consensus 157 ~LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e- 235 (502)
++++.-+-+.||.++.++.-+.- .+-|..+|+. --+||.+|+|||-=. +++.+.+|.. .+.++.
T Consensus 64 q~~~~~~~~~~l~tkt~r~~~~~-~~~A~k~g~l--------~~vyg~~g~gKt~a~----~~y~~s~p~~--~l~~~~p 128 (297)
T COG2842 64 QAALEKLAPDFLETKTVRRIFFR-TRPASKTGSL--------VVVYGYAGLGKTQAA----KNYAPSNPNA--LLIEADP 128 (297)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHH-HHHHHHCCCE--------EEEECCCCCHHHHHH----HHHCCCCCCC--EEECCCH
T ss_conf 33555466432035024767542-0555516854--------788633220068999----8653358641--3615881
Q ss_pred -----HHHHHHHHHHHC---CCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHH---HHHC-CCEEEEECCCCHH
Q ss_conf -----889999999861---988999999740310205444453175069999999999---8856-9879996487567
Q gi|254780627|r 236 -----YFMWRFASAIRD---NCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNS---LLDS-AKQVVAAADRPPS 303 (502)
Q Consensus 236 -----~F~~~~~~a~~~---~~~~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~---l~~~-gkqiv~tsd~~P~ 303 (502)
.++.....+... +...++ .+|-.+.| -|-...+--...+.-+++.|+. +++. |=-+|+.+- |.
T Consensus 129 ~~~a~~~i~~i~~~~~~~~~~~~~d~--~~~~~~~l-~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~~vLvG~--pr 203 (297)
T COG2842 129 SYTALVLILIICAAAFGATDGTINDL--TERLMIRL-RDTVRLIIVDEADRLPYRALEELRRIHDKTGIGVVLVGM--PR 203 (297)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHH-CCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCEEEEECC--HH
T ss_conf 36788999999998740142168888--99999997-157652665032125868999999988750815998367--68
Q ss_pred HHCCCC------HHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 613630------34576530211577515888999999999998864311689789899999985027888999999999
Q gi|254780627|r 304 ELESLD------PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 (502)
Q Consensus 304 ~l~~l~------~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~ 377 (502)
...++. .||.||-.-|+...-.-||..+-..|....+. ...++++-.+-....+++|.|+-++..
T Consensus 204 L~~~l~~~~~~~~rl~srv~v~~~~~~~~~d~d~~~~~~~~~l~---------~~~~~~v~~~~~~~~g~~~~L~~~l~~ 274 (297)
T COG2842 204 LFKVLRRPEDELSRLYSRVRVGKLLGEKFPDADELAEIAALVLP---------TEDELVLMQVIKETEGNIRRLDKILAG 274 (297)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CCHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 88516640578999998756676553320536888999986176---------326999999999600157689999860
Q ss_pred HHHHHHHC
Q ss_conf 99986302
Q gi|254780627|r 378 LVFRHSFA 385 (502)
Q Consensus 378 l~~~~~~~ 385 (502)
....++-.
T Consensus 275 ~~~~a~~~ 282 (297)
T COG2842 275 AVGTARSN 282 (297)
T ss_pred HHHHHHHC
T ss_conf 14454422
No 270
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.50 E-value=0.075 Score=33.18 Aligned_cols=23 Identities=39% Similarity=0.414 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 89862788885799999999998
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASI 221 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~ 221 (502)
.-|-|+.|.|||-|+..|...+.
T Consensus 28 ~~liGpNGaGKSTllk~i~Gl~~ 50 (213)
T cd03235 28 LAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999869999999976878
No 271
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.49 E-value=0.049 Score=34.52 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 89862788885799999999998
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASI 221 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~ 221 (502)
+=|.|+.|.|||-|++.|..-+.
T Consensus 51 vgilG~NGaGKSTLl~~i~Gl~~ 73 (224)
T cd03220 51 IGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99997999819999999975877
No 272
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=95.48 E-value=0.033 Score=35.74 Aligned_cols=191 Identities=25% Similarity=0.353 Sum_probs=105.9
Q ss_pred HHHHHCCCCCH-HHHHHHHHHHHHCCCCCCCCCCCCE--EEEECCCCCCHHHHHHHHHHHHHHHC-----CCCCEEEEEH
Q ss_conf 88763288614-7899999999824100136555554--89862788885799999999998630-----6881686469
Q gi|254780627|r 163 VFSTFIEGSSN-RVALTAAQSIAEVDSHGYTTVRLNP--LFIHASVGLGKTHLLQAIANASIKRQ-----PNLRVVYLTA 234 (502)
Q Consensus 163 TFDnFVVG~sN-~lA~aAAkaVAe~pg~~~~~~~~NP--Lfi~G~~GlGKTHLl~ai~~~~~~~~-----~~~~v~y~~~ 234 (502)
.|+.- +|..+ -.|..||+ | |+ || .-||||+|+|||==-.=+=-|.+++. ++++.+=+.|
T Consensus 63 SF~EI-iGQe~GI~ALKAAL--C---GP-------NPQHVIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~FVEiDA 129 (532)
T TIGR02902 63 SFDEI-IGQEEGIKALKAAL--C---GP-------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAFVEIDA 129 (532)
T ss_pred CCCCC-CCCHHHHHHHHHHC--C---CC-------CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEC
T ss_conf 63325-67355689999860--6---86-------896389878869617899999999865087537898866898505
Q ss_pred HHHHHHHHHHHHCCCHHHHHHH--------------HHHC---------------------CHHHHHHHHHHC----CC-
Q ss_conf 8889999999861988999999--------------7403---------------------102054444531----75-
Q gi|254780627|r 235 EYFMWRFASAIRDNCALNLKDS--------------LRNI---------------------DLLLIDDMQFLQ----GK- 274 (502)
Q Consensus 235 e~F~~~~~~a~~~~~~~~fr~~--------------~r~~---------------------DvLliDDiqfl~----gk- 274 (502)
++-.|=+| |+.+ -||=||-|=.|- ||
T Consensus 130 --------------TT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AHGGvLFIDEIGELHP~~MNKL 195 (532)
T TIGR02902 130 --------------TTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAHGGVLFIDEIGELHPVQMNKL 195 (532)
T ss_pred --------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf --------------103602146666567761585333765457885575877763202586551212466582435314
Q ss_pred -CHHHH---HH-------------HHHHHHHHCC----CEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEE--CCCCHHH
Q ss_conf -06999---99-------------9999988569----879996487567613630345765302115775--1588899
Q gi|254780627|r 275 -LIQHE---FC-------------HLLNSLLDSA----KQVVAAADRPPSELESLDPRIRSRLQGGVSVPL--GLHDYEM 331 (502)
Q Consensus 275 -~tqee---~f-------------~~~n~l~~~g----kqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i--~~Pd~e~ 331 (502)
|..|- || .-+-+..++| =++|=+.-|.|.||+ +-|+|| +++| .+-+.|-
T Consensus 196 LKVLEDRKVFLdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIp---PAlRSR-----C~EIFFR~L~~EE 267 (532)
T TIGR02902 196 LKVLEDRKVFLDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIP---PALRSR-----CVEIFFRPLLKEE 267 (532)
T ss_pred HHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCC---HHHHCC-----CEEEEECCCCHHH
T ss_conf 11330222000012358777865427899720678734012133369877678---346505-----2267716888789
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHHHHHC--C-CCCHHHHHHHH
Q ss_conf 99999999988643116897898999999850278889999999999--9986302--4-68778899999
Q gi|254780627|r 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL--VFRHSFA--P-ILTAEIADELL 397 (502)
Q Consensus 332 r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l--~~~~~~~--~-~~~~~~~~~~l 397 (502)
-..|-|+ -++.-++.|+++.++.|+. +++|-|| |+|=+ .+--.++ + .|..+.+.=++
T Consensus 268 i~~iAk~-----AaeKIg~~l~~~Al~~I~~-Ya~nGRE---AvN~~QLAaG~a~~E~Rk~I~~~DieWV~ 329 (532)
T TIGR02902 268 IKEIAKN-----AAEKIGLNLEKEALDLIAK-YASNGRE---AVNLVQLAAGIALGENRKRILAEDIEWVI 329 (532)
T ss_pred HHHHHHH-----HHHHCCCCCCHHHHHHHHH-HHCCCCH---HHHHHHHHHHHEECCCCCEECHHHHHHHH
T ss_conf 9999876-----5653046547547999998-7405406---77899997314012887612054644555
No 273
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.48 E-value=0.059 Score=33.91 Aligned_cols=38 Identities=29% Similarity=0.334 Sum_probs=25.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCC----CCCEEEEEHHH
Q ss_conf 898627888857999999999986306----88168646988
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQP----NLRVVYLTAEY 236 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~----~~~v~y~~~e~ 236 (502)
.-|.|++|.|||-|+..|...+..... +.++-|++-+.
T Consensus 34 ~~IvG~sGsGKSTLl~~i~G~~~~~~G~I~~~g~i~~v~Q~~ 75 (204)
T cd03250 34 VAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEP 75 (204)
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 999999998589999998189525689522589889995877
No 274
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.02 Score=37.24 Aligned_cols=103 Identities=22% Similarity=0.327 Sum_probs=62.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCC-----------------CCEEEEEHHHHHHHHHHHHHCC--------CHHH
Q ss_conf 48986278888579999999999863068-----------------8168646988899999998619--------8899
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPN-----------------LRVVYLTAEYFMWRFASAIRDN--------CALN 252 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~-----------------~~v~y~~~e~F~~~~~~a~~~~--------~~~~ 252 (502)
-+-|.|++|.|||-|++.+.......... .++-|+.-+-+. |-..+++| .+.-
T Consensus 30 ~i~ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l--f~~tv~eNiLSgGq~Qri~l 107 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFL--FSGTIRENILSGGQRQRIAI 107 (171)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCC--CCCCHHHHCCCHHHHHHHHH
T ss_conf 9999999998399999999767758974899999998859989986318999666843--75779997744889999999
Q ss_pred HHHHHHHCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHC
Q ss_conf 9999740310205444453175--06999999999988569879996487567613
Q gi|254780627|r 253 LKDSLRNIDLLLIDDMQFLQGK--LIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 (502)
Q Consensus 253 fr~~~r~~DvLliDDiqfl~gk--~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~ 306 (502)
-|.-+++.++||+|.- .++= .++..++..+..+. .|+.+|+.+-+ +..+.
T Consensus 108 ARal~~~p~illlDEp--ts~LD~~~~~~i~~~l~~~~-~~~Tvi~vtH~-~~~~~ 159 (171)
T cd03228 108 ARALLRDPPILILDEA--TSALDPETEALILEALRALA-KGKTVIVIAHR-LSTIR 159 (171)
T ss_pred HHHHHHCCCEEEEECC--CCCCCHHHHHHHHHHHHHHC-CCCEEEEEECC-HHHHH
T ss_conf 9999748998999577--66799899999999999980-99989999579-99997
No 275
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.47 E-value=0.095 Score=32.46 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=46.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHC
Q ss_conf 5489862788885799999999998630688168646988899999998619889999997403102054444531
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~ 272 (502)
.-..|+|++|.|||-+.....+...+. +.+++|+|.++=-.++......-. -+|...+.+-.+.++|-.....
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~~~l~~~~~~~g-~d~~~~~~~g~l~i~d~~~~~~ 96 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESPEELLENARSFG-WDLEVYIEKGKLAILDAFLSEK 96 (260)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHC--CCEEEEEEEECCHHHHHHHHHHCC-CCHHHHHHCCEEEEEECCCCCC
T ss_conf 789999389986899999999977626--985899992069899999998809-9778975444068763121112
No 276
>KOG0732 consensus
Probab=95.46 E-value=0.2 Score=30.23 Aligned_cols=165 Identities=22% Similarity=0.313 Sum_probs=97.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHC--CCH-----HHHHHHHHH-CCHHHHHHHHH
Q ss_conf 8986278888579999999999863068816864698889999999861--988-----999999740-31020544445
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD--NCA-----LNLKDSLRN-IDLLLIDDMQF 270 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~--~~~-----~~fr~~~r~-~DvLliDDiqf 270 (502)
...||++|.|||-...|.+.....-+ .+|-| |+.+-.+.+.. +.. ..|.+-++. .-+.-+|-|+-
T Consensus 302 vL~~GppGTGkTl~araLa~~~s~~~--~kisf-----fmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdG 374 (1080)
T KOG0732 302 VLFHGPPGTGKTLMARALAAACSRGN--RKISF-----FMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDG 374 (1080)
T ss_pred EEECCCCCCCHHHHHHHHHHHHCCCC--CCCCH-----HHHCCCHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 23028998725688886665405411--02024-----431484433254475778899889887444851773055566
Q ss_pred HCCCC--HHHH--------HHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHH--HHHHHCCEEEEECCCCHHHHHHHHHH
Q ss_conf 31750--6999--------999999988569879996487567613630345--76530211577515888999999999
Q gi|254780627|r 271 LQGKL--IQHE--------FCHLLNSLLDSAKQVVAAADRPPSELESLDPRI--RSRLQGGVSVPLGLHDYEMRFSILKN 338 (502)
Q Consensus 271 l~gk~--tqee--------~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL--~SR~~~Gl~~~i~~Pd~e~r~~Il~~ 338 (502)
|+-.+ -||. |+...+.|-..|--+|+.+-.-|.. ++.-| -.||-.-. -..-||.+.|.+||.-
T Consensus 375 lapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda---~dpaLRRPgrfdref--~f~lp~~~ar~~Il~I 449 (1080)
T KOG0732 375 LAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDA---IDPALRRPGRFDREF--YFPLPDVDARAKILDI 449 (1080)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCC---CCHHHCCCCCCCEEE--EEECCCHHHHHHHHHH
T ss_conf 46565366777445677778876047777786589715678332---465442886665257--5037866788899987
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 998864311689789899999985027888999999999999
Q gi|254780627|r 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 (502)
Q Consensus 339 k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~ 380 (502)
. .....=.++...++.||+...+-+...--||-...+
T Consensus 450 h-----trkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAa 486 (1080)
T KOG0732 450 H-----TRKWEPPISRELLLWLAEETSGYGGADLKALCTEAA 486 (1080)
T ss_pred H-----CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 5-----157778877789999988623400578998888875
No 277
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41 E-value=0.038 Score=35.27 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8986278888579999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~ 220 (502)
+-|-|++|.|||-||++++..+
T Consensus 36 ~~llG~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 36 VLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999899998899999983787
No 278
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.38 E-value=0.092 Score=32.56 Aligned_cols=123 Identities=25% Similarity=0.283 Sum_probs=72.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH--------------HHCCCCCEEEEEH------------HHHH--------------
Q ss_conf 89862788885799999999998--------------6306881686469------------8889--------------
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASI--------------KRQPNLRVVYLTA------------EYFM-------------- 238 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~--------------~~~~~~~v~y~~~------------e~F~-------------- 238 (502)
+=|-||-|.|||-|+.+|-.-+. +..+..+|-|++- ++|+
T Consensus 33 ~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~ 112 (254)
T COG1121 33 TALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRL 112 (254)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
T ss_conf 99999988888999999967876774269983666333466776997576102676799679999860675446601366
Q ss_pred -----HHHHHHHHCCCHHHHHHH-------------------HHHCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHCCC
Q ss_conf -----999999861988999999-------------------740310205444453175--069999999999885698
Q gi|254780627|r 239 -----WRFASAIRDNCALNLKDS-------------------LRNIDLLLIDDMQFLQGK--LIQHEFCHLLNSLLDSAK 292 (502)
Q Consensus 239 -----~~~~~a~~~~~~~~fr~~-------------------~r~~DvLliDDiqfl~gk--~tqee~f~~~n~l~~~gk 292 (502)
...-.|+..=.|.+|+++ .++.|+|++|- =++|= ++|.+|+.+++.|.+.|+
T Consensus 113 ~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDE--P~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 113 NKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDE--PFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred CHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECC--CCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 67779999999998392666479555467279999999998536999899668--7545798789999999999987898
Q ss_pred EEEEECCCCHHHHCCCCHHHHHHHHCCEEEEEC
Q ss_conf 799964875676136303457653021157751
Q gi|254780627|r 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 (502)
Q Consensus 293 qiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~ 325 (502)
.|++.+-- +......-||.+ -+...+++.-.
T Consensus 191 tIl~vtHD-L~~v~~~~D~vi-~Ln~~~~~~G~ 221 (254)
T COG1121 191 TVLMVTHD-LGLVMAYFDRVI-CLNRHLIASGP 221 (254)
T ss_pred EEEEEECC-CHHHHHHCCEEE-EECCEEEECCC
T ss_conf 89999588-177685388799-98576366168
No 279
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.36 E-value=0.08 Score=32.97 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8986278888579999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~ 220 (502)
+-|-|+.|.|||-||+.++--.
T Consensus 30 ~~l~G~NGaGKSTLl~~l~Gl~ 51 (204)
T PRK13538 30 VQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999985999999997688
No 280
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.31 E-value=0.099 Score=32.32 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8986278888579999999999863
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKR 223 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~ 223 (502)
+-|-|++|.|||-|+..|...+...
T Consensus 37 v~ivG~sGsGKSTLl~ll~g~~~p~ 61 (207)
T cd03369 37 IGIVGRTGAGKSTLILALFRFLEAE 61 (207)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 9999999987999999999872888
No 281
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.29 E-value=0.028 Score=36.27 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 4898627888857999999999986
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIK 222 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~ 222 (502)
-+-|-|++|.|||-|+++|...+..
T Consensus 27 ~~~liG~nGsGKTTLl~~i~G~~~~ 51 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLKP 51 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999989998899999999579899
No 282
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.28 E-value=0.022 Score=36.93 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=67.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH-HHHHHHCC---------C----HHHHHHHHHHCCHHH
Q ss_conf 898627888857999999999986306881686469888999-99998619---------8----899999974031020
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR-FASAIRDN---------C----ALNLKDSLRNIDLLL 264 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~-~~~a~~~~---------~----~~~fr~~~r~~DvLl 264 (502)
+-|-|++|.|||-|+..|.--.. |+.--+++..++.... -..+.+.+ . +.--|.-..+.++|+
T Consensus 29 ~~lvG~nGaGKSTl~~~i~Gl~~---p~~G~i~i~G~~i~~~~~~~~~~~gi~~v~qLSgG~~Qrv~iaral~~~p~lli 105 (163)
T cd03216 29 HALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLI 105 (163)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC---CCCCEEEECCEECCCCCHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 99998899899999999957768---985789999999999999999987994894699899999999999972999999
Q ss_pred HHHHHHHCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHH
Q ss_conf 5444453175--06999999999988569879996487567613630345
Q gi|254780627|r 265 IDDMQFLQGK--LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 (502)
Q Consensus 265 iDDiqfl~gk--~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL 312 (502)
+|.- .+|= .++++++.++..+.+.|+.||+++-. ..++..+-||+
T Consensus 106 lDEP--t~gLD~~~~~~i~~~l~~l~~~G~til~vtH~-l~~~~~~~Drv 152 (163)
T cd03216 106 LDEP--TAALTPAEVERLFKVIRRLRAQGVAVIFISHR-LDEVFEIADRV 152 (163)
T ss_pred EECC--CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHCCEE
T ss_conf 9097--55799999999999999998789899999384-99999869999
No 283
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.27 E-value=0.042 Score=34.97 Aligned_cols=42 Identities=36% Similarity=0.280 Sum_probs=32.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCC----------CCCEEEEEHHHHHHHH
Q ss_conf 98627888857999999999986306----------8816864698889999
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQP----------NLRVVYLTAEYFMWRF 241 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~~----------~~~v~y~~~e~F~~~~ 241 (502)
.|||++|+|||.|+--++-.+..-.| ..+|+|+++|+-..++
T Consensus 5 ~l~g~gG~GKS~lal~lAl~vA~G~~~~g~~~~~~~~G~Vly~~~Ed~~~~l 56 (239)
T cd01125 5 ALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEI 56 (239)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHH
T ss_conf 9980899888999999999997599656898546877619999788998999
No 284
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.27 E-value=0.02 Score=37.20 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=30.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH
Q ss_conf 98627888857999999999986306881686469888999
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~ 240 (502)
=|.|+||.|||.|.+++.+.+..+. .++..++-++|-.+
T Consensus 3 gIaG~SgSGKTT~a~~L~~~l~~~~--~~~~vis~D~yy~~ 41 (179)
T cd02028 3 GIAGPSGSGKTTFAKKLSNQLRVNG--IGPVVISLDDYYVP 41 (179)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCCCC
T ss_conf 9989897789999999999984648--85399954666457
No 285
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.074 Score=33.24 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 89862788885799999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIAN 218 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~ 218 (502)
+-|-|++|.|||-||+.++.
T Consensus 36 ~~llGpnGaGKSTLl~~l~g 55 (192)
T cd03232 36 TALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999988999999837
No 286
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.26 E-value=0.056 Score=34.10 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8986278888579999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~ 220 (502)
+-|.|++|.|||-|++.+....
T Consensus 32 iaIvG~sGsGKSTLl~ll~gl~ 53 (238)
T cd03249 32 VALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999998999999982386
No 287
>KOG0054 consensus
Probab=95.25 E-value=0.077 Score=33.12 Aligned_cols=100 Identities=20% Similarity=0.196 Sum_probs=60.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCC----CCCEEEEEHHHH--------------------HHHHHHHH--H------
Q ss_conf 898627888857999999999986306----881686469888--------------------99999998--6------
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQP----NLRVVYLTAEYF--------------------MWRFASAI--R------ 246 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~----~~~v~y~~~e~F--------------------~~~~~~a~--~------ 246 (502)
.=|.|++|.|||-||+||--|+..... ...+.|++-+-+ -.+.+.|- +
T Consensus 550 vaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs~aYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~L 629 (1381)
T KOG0054 550 VAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEIL 629 (1381)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCHHHCCCHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHC
T ss_conf 99989998888999999965875567559984748986665564178566750068703599999999970677679746
Q ss_pred -CC------------------CHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHH-HHHHHHHHCCCEEEEECC
Q ss_conf -19------------------889999997403102054444531750699999-999998856987999648
Q gi|254780627|r 247 -DN------------------CALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFC-HLLNSLLDSAKQVVAAAD 299 (502)
Q Consensus 247 -~~------------------~~~~fr~~~r~~DvLliDDiqfl~gk~tqee~f-~~~n~l~~~gkqiv~tsd 299 (502)
.+ .+.--|.-|+++|+-|+||.=-=-.-.+-..+| +.+ ....++|.+|+...
T Consensus 630 p~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci-~~~L~~KT~ILVTH 701 (1381)
T KOG0054 630 PFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECI-RGLLRGKTVILVTH 701 (1381)
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH-HHHHCCCEEEEEEC
T ss_conf 8987535778862776769999999999865799898879632240776699999999-87645988999847
No 288
>TIGR01618 phage_P_loop phage nucleotide-binding protein; InterPro: IPR006505 These sequences represent an uncharacterised family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of these proteins is unknown..
Probab=95.23 E-value=0.065 Score=33.63 Aligned_cols=123 Identities=21% Similarity=0.248 Sum_probs=74.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH-----------CCCHHHHHHH-------
Q ss_conf 5554898627888857999999999986306881686469888999999986-----------1988999999-------
Q gi|254780627|r 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR-----------DNCALNLKDS------- 256 (502)
Q Consensus 195 ~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~-----------~~~~~~fr~~------- 256 (502)
.++-.||||.+|+|||-+. +.-|+.+++ ++.+. ++....+.. .+.+++.-+.
T Consensus 12 ~~~~~lIYG~~G~GKTS~~--------K~l~GktL~-l~~D~-SSkVL~G~~nvdiim~~~d~~~~~~~~~e~~~~~~~~ 81 (229)
T TIGR01618 12 EYFRYLIYGKPGLGKTSTI--------KYLPGKTLV-LSLDK-SSKVLAGDENVDIIMADLDDEKPIQEMVEFYKELQNI 81 (229)
T ss_pred CCCEEEEECCCCCCCCCEE--------EECCCCEEE-EECCC-CCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 6636888758988723056--------645887898-83678-6443468998338998606998478999999997322
Q ss_pred -HHHCCHHHHHHHHHH----------CCCC-HH----------HHHHHHHHHHHH-CCCEEEEECCCCHHHHCCCCHHHH
Q ss_conf -740310205444453----------1750-69----------999999999885-698799964875676136303457
Q gi|254780627|r 257 -LRNIDLLLIDDMQFL----------QGKL-IQ----------HEFCHLLNSLLD-SAKQVVAAADRPPSELESLDPRIR 313 (502)
Q Consensus 257 -~r~~DvLliDDiqfl----------~gk~-tq----------ee~f~~~n~l~~-~gkqiv~tsd~~P~~l~~l~~rL~ 313 (502)
-.++|.+.||.|=-| ++|. .+ .-|.-.+-.|.+ .|+.|++|+=-.-.++......+.
T Consensus 82 ~~~~Y~niViDNis~lq~~~L~~~gr~~K~~~~p~~q~Y~~~~~~~~d~~~vl~~l~~~~i~~tAwe~~~~~~~e~G~iy 161 (229)
T TIGR01618 82 QAEEYDNIVIDNISELQKLWLINLGREAKNGRSPELQHYQKLDLYFLDLLTVLKELKNKNIYVTAWEDTNQLSLESGQIY 161 (229)
T ss_pred HHHCCCEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHH
T ss_conf 53457658981427899999984684424578865000368889999999999855898799987656675340114668
Q ss_pred HHHHCCEEEEECCCCHHHHHHHHHH
Q ss_conf 6530211577515888999999999
Q gi|254780627|r 314 SRLQGGVSVPLGLHDYEMRFSILKN 338 (502)
Q Consensus 314 SR~~~Gl~~~i~~Pd~e~r~~Il~~ 338 (502)
.|+.. ++|-++|..
T Consensus 162 ~ry~p-----------dir~kvlN~ 175 (229)
T TIGR01618 162 NRYLP-----------DIREKVLNA 175 (229)
T ss_pred HHHHH-----------HHHHHHHHH
T ss_conf 76667-----------754788765
No 289
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=95.22 E-value=0.017 Score=37.79 Aligned_cols=39 Identities=23% Similarity=0.242 Sum_probs=29.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH
Q ss_conf 898627888857999999999986306881686469888
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F 237 (502)
.-|+|++|+|||.|+.-+.+.+.+.+.+..|+-.-.|..
T Consensus 158 igIfggaGvGKTvLl~eli~niak~~~~v~V~a~IGER~ 196 (480)
T CHL00060 158 IGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERT 196 (480)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 876568998878999999961200379889999966773
No 290
>PRK13542 consensus
Probab=95.20 E-value=0.13 Score=31.40 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=23.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 898627888857999999999986306881686469
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~ 234 (502)
+-|.|+.|.|||-||+.|...+. |..--+++..
T Consensus 47 ~~liGpNGaGKTTLlk~l~Gll~---p~~G~I~~~G 79 (224)
T PRK13542 47 LQVMGPNGSGKTSLLRVLSGLMP---PAEGDLYWRG 79 (224)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC---CCCEEEEECC
T ss_conf 99999999999999999957978---8852899999
No 291
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.19 E-value=0.024 Score=36.68 Aligned_cols=111 Identities=23% Similarity=0.262 Sum_probs=64.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCC----------------CCEEEEEHHHHHHHHHHHHH----CC----CHHHHH
Q ss_conf 8986278888579999999999863068----------------81686469888999999986----19----889999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPN----------------LRVVYLTAEYFMWRFASAIR----DN----CALNLK 254 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~----------------~~v~y~~~e~F~~~~~~a~~----~~----~~~~fr 254 (502)
+-|-|+.|.|||-||..|........-. .++-|+.-+........... ++ .+.--+
T Consensus 29 ~gl~G~NGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~ig~v~q~~~l~~~ltv~e~l~LSgG~kqrv~ia~ 108 (173)
T cd03230 29 YGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLALAQ 108 (173)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHCCEEEEECCCCCCCCCCHHHHHHCCHHHHHHHHHHH
T ss_conf 99987899799999999976857787889999999886848886578999568766712677898633989999999999
Q ss_pred HHHHHCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHH
Q ss_conf 99740310205444453175--06999999999988569879996487567613630345
Q gi|254780627|r 255 DSLRNIDLLLIDDMQFLQGK--LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 (502)
Q Consensus 255 ~~~r~~DvLliDDiqfl~gk--~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL 312 (502)
.-..+.++|++|. =.+|= .+++++...+..+.+.|+.||++|-. ..++..+-+|+
T Consensus 109 al~~~p~lllLDE--Pt~gLD~~~~~~i~~~i~~l~~~g~tvi~~tH~-l~~~~~~~dri 165 (173)
T cd03230 109 ALLHDPELLILDE--PTSGLDPESRREFWELLRELKKEGKTILLSSHI-LEEAERLCDRV 165 (173)
T ss_pred HHHCCCCEEEECC--CCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC-HHHHHHHCCEE
T ss_conf 9964999999908--865799999999999999999689999999283-89999869999
No 292
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=95.17 E-value=0.036 Score=35.44 Aligned_cols=100 Identities=22% Similarity=0.341 Sum_probs=58.3
Q ss_pred EEEECCCCCCHHHHHH------HHHHHHHH---HCCCCCEEEEEHHHHHHHHHHHHHC---C---------C--------
Q ss_conf 8986278888579999------99999986---3068816864698889999999861---9---------8--------
Q gi|254780627|r 199 LFIHASVGLGKTHLLQ------AIANASIK---RQPNLRVVYLTAEYFMWRFASAIRD---N---------C-------- 249 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~------ai~~~~~~---~~~~~~v~y~~~e~F~~~~~~a~~~---~---------~-------- 249 (502)
.||||++|+|||-|+- |.|..... ..| .+|+|+|+|..-++.+.-++. . +
T Consensus 92 ~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~ep-GkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~G 170 (402)
T COG3598 92 SILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEP-GKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVSG 170 (402)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC-CEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHEECCCCCC
T ss_conf 898448862376899999999986477745335588-8079998226868899999999987099857632200002456
Q ss_pred ------------HHHHHHHHH--HCCHHHHHHH-HHHCCCC---HHH-HHHHHHHHHHH-CCCEEEEECC
Q ss_conf ------------899999974--0310205444-4531750---699-99999999885-6987999648
Q gi|254780627|r 250 ------------ALNLKDSLR--NIDLLLIDDM-QFLQGKL---IQH-EFCHLLNSLLD-SAKQVVAAAD 299 (502)
Q Consensus 250 ------------~~~fr~~~r--~~DvLliDDi-qfl~gk~---tqe-e~f~~~n~l~~-~gkqiv~tsd 299 (502)
...|-...+ -.|+.+||-+ -|+.|+. .|+ +|..-+..+-. .+-.|++.+-
T Consensus 171 aa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~~~rkla~~l~caIiy~hH 240 (402)
T COG3598 171 AADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGKSISDVQVKEFIKKTRKLARNLECAIIYIHH 240 (402)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 7872001058999999999987478749973445422774111689999999999999862773999944
No 293
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=95.16 E-value=0.32 Score=28.74 Aligned_cols=253 Identities=19% Similarity=0.240 Sum_probs=140.7
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH-
Q ss_conf 3288614789999999982410013655555489862788885799999999998630688168646988899999998-
Q gi|254780627|r 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI- 245 (502)
Q Consensus 167 FVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~- 245 (502)
+..|++-+--+.-+..|+... =|+++.|.+|.||-||.+||-..--...| .+-+.+.-..+..+.+.
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~---------~pvll~GEtGtGKe~laraiH~~s~~~gp---fvAvNCaAip~~liesEL 383 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATD---------LPVLLQGETGTGKEVLARAIHQNSEAAGP---FVAVNCAAIPEALIESEL 383 (606)
T ss_pred CCCCHHHHHHHHHHHHHHHCC---------CCEEECCCCCHHHHHHHHHHHHCCCCCCC---EEEEEECCCHHHHHHHHH
T ss_conf 455788999999998876247---------87685387655689999999853655698---379985034477646777
Q ss_pred ---HCCCHH-HHHHHHH----HCC--HHHHHHHHHHCCCCHHHHHHHHHHHH---------HHCCCEEEEECCCCHHHH-
Q ss_conf ---619889-9999974----031--02054444531750699999999998---------856987999648756761-
Q gi|254780627|r 246 ---RDNCAL-NLKDSLR----NID--LLLIDDMQFLQGKLIQHEFCHLLNSL---------LDSAKQVVAAADRPPSEL- 305 (502)
Q Consensus 246 ---~~~~~~-~fr~~~r----~~D--vLliDDiqfl~gk~tqee~f~~~n~l---------~~~gkqiv~tsd~~P~~l- 305 (502)
..+... .+++-|+ .+| -|-+|-|-.+. -..|--|++.+.+- +.-.=+||-++-+.-.+|
T Consensus 384 FGy~~GafTga~~kG~~g~~~~A~gGtlFldeIgd~p-~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv 462 (606)
T COG3284 384 FGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIGDMP-LALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLV 462 (606)
T ss_pred HCCCCCCCCCCHHCCCCCCCEECCCCCCHHHHHHHCH-HHHHHHHHHHHHHCCEECCCCCCEEEEEEEEECCCCCHHHHH
T ss_conf 4457656433001066554101578760898761141-899999999986182523588521577999834675799998
Q ss_pred --CCCCHHHHHHHHCCEEEEECCCCHHH---HHHHHHHHHHHHHHHCCCCCCCHHHHH-HHHHHCCCCHHHHHHHHHHHH
Q ss_conf --36303457653021157751588899---999999999886431168978989999-998502788899999999999
Q gi|254780627|r 306 --ESLDPRIRSRLQGGVSVPLGLHDYEM---RFSILKNRLAISQKEDPKLNINEEVLM-HVARTVTTSGRELDGAFNQLV 379 (502)
Q Consensus 306 --~~l~~rL~SR~~~Gl~~~i~~Pd~e~---r~~Il~~k~~~~~~~~~~~~l~~~v~~-~la~~~~~~vR~Legal~~l~ 379 (502)
..|.+-|.=|+. |+++.+ |-+-. |...|..-+..+.. ..+.|+++++. .++-+-.||||||-..+-++.
T Consensus 463 ~~g~fredLyyrL~-~~~i~l--P~lr~R~d~~~~l~~~~~~~~~--~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~ 537 (606)
T COG3284 463 EQGRFREDLYYRLN-AFVITL--PPLRERSDRIPLLDRILKREND--WRLQLDDDALARLLAYRWPGNIRELDNVIERLA 537 (606)
T ss_pred HCCCCHHHHHHHHC-CEEECC--CCHHCCCCCHHHHHHHHHHCCC--CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 75971487888744-715506--8611046657899999987268--775689999999985789982899999999998
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCHHHCHHHHHHHHHHHHHCCCCHHH
Q ss_conf 98630246877889999987630378875798999999999809999994088877401445799999999851568789
Q gi|254780627|r 380 FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 (502)
Q Consensus 380 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~I~~~V~~~~~i~~~~l~s~~R~~~i~~~RqiamyL~r~~t~~s~~~ 459 (502)
+.+.-++.-.-++-.+++..-. |+ ...+..-+|--+-.-|+.--++
T Consensus 538 ~l~~~g~~~~~dlp~~l~~~~~--------~~--------------------------~~~~~~~~l~~al~~~~~~is~ 583 (606)
T COG3284 538 ALSDGGRIRVSDLPPELLEEQA--------TP--------------------------REDIEKAALLAALQATNGNISE 583 (606)
T ss_pred HCCCCCEEECCCCCHHHHHHHC--------CC--------------------------CCCHHHHHHHHHHHHCCCCHHH
T ss_conf 7079973571449888875432--------53--------------------------0015799999999980897999
Q ss_pred HHHHHCCCCHHHH
Q ss_conf 9988479843799
Q gi|254780627|r 460 IGRRFGDRDHTTV 472 (502)
Q Consensus 460 IG~~fg~rdHsTV 472 (502)
-.+..| =+-||+
T Consensus 584 aa~~lg-i~R~T~ 595 (606)
T COG3284 584 AARLLG-ISRSTL 595 (606)
T ss_pred HHHHHC-CCHHHH
T ss_conf 999859-978889
No 294
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.10 E-value=0.027 Score=36.39 Aligned_cols=102 Identities=20% Similarity=0.181 Sum_probs=60.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH------CCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 48986278888579999999999863------068816864698889999999861988999999740310205444453
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKR------QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~------~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl 271 (502)
-+.|.|+.|.|||-|+..+...+... .+..++.|++- + ++=+...+.--+.-..+.++|++|.- .
T Consensus 28 ~~~l~G~NGsGKTTl~~~l~G~~~~~~G~i~~~~~~~i~y~~Q------L-SgGqkqr~~la~al~~~p~iliLDEP--t 98 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ------L-SGGEKMRLALAKLLLENPNLLLLDEP--T 98 (144)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCCEEEEEHH------C-CHHHHHHHHHHHHHCCCCCEEEEECC--C
T ss_conf 9999989998499999998489889850999999608998700------7-99999999999997259989999577--5
Q ss_pred CCC--CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHH
Q ss_conf 175--06999999999988569879996487567613630345
Q gi|254780627|r 272 QGK--LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 (502)
Q Consensus 272 ~gk--~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL 312 (502)
+|= .+++.+...+ .+.++.+|++|-. +..+..+-+|+
T Consensus 99 ~~LD~~~~~~i~~~l---~~~~~tii~vsHd-~~~~~~~~dri 137 (144)
T cd03221 99 NHLDLESIEALEEAL---KEYPGTVILVSHD-RYFLDQVATKI 137 (144)
T ss_pred CCCCHHHHHHHHHHH---HHCCCEEEEEECC-HHHHHHHCCEE
T ss_conf 558999999999999---9709999999679-89999879999
No 295
>PHA02244 ATPase-like protein
Probab=95.10 E-value=0.025 Score=36.62 Aligned_cols=84 Identities=23% Similarity=0.338 Sum_probs=54.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH---HHHH-HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHC
Q ss_conf 54898627888857999999999986306881686469---8889-9999998619889999997403102054444531
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA---EYFM-WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~---e~F~-~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~ 272 (502)
-|.|+.|+.|.||||..+.|+-.+ .. -+|.+. ++|- .-|++|-..=--..|++-|++--++|+|.|.-=
T Consensus 120 ipV~L~G~AGsGKt~~A~qIA~aL-dl-----~FYf~gAI~~ef~L~Gf~DAnG~yh~T~f~kaFk~GGLfLlDEiDAS- 192 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEAL-DL-----DFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDAS- 192 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH-CC-----CCEECHHHHHHHHCCCEECCCCCEECCHHHHHHHCCCEEEEEHHCCC-
T ss_conf 856997588886348999999985-88-----82441323013430125648996726389999861887997320044-
Q ss_pred CCCHHHHHHHHHHHHHHCC
Q ss_conf 7506999999999988569
Q gi|254780627|r 273 GKLIQHEFCHLLNSLLDSA 291 (502)
Q Consensus 273 gk~tqee~f~~~n~l~~~g 291 (502)
.-+.+-+||.-..+|
T Consensus 193 ----nP~aL~~lNaALAN~ 207 (383)
T PHA02244 193 ----IPEALIIINSAIANK 207 (383)
T ss_pred ----CHHHHHHHHHHHHCC
T ss_conf ----879999998998647
No 296
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.08 E-value=0.083 Score=32.87 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 4898627888857999999999986
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIK 222 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~ 222 (502)
-+-|.|++|.|||-||.++...+..
T Consensus 29 ~~~IvG~sGsGKSTLl~~l~g~~~~ 53 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILGEMQT 53 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999999998099999998555656
No 297
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.08 E-value=0.28 Score=29.16 Aligned_cols=104 Identities=18% Similarity=0.288 Sum_probs=60.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHH--CCCCCEEEEE-HHHHHHHHHHHHHCC-------------------C-------
Q ss_conf 8986278888579999999999863--0688168646-988899999998619-------------------8-------
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKR--QPNLRVVYLT-AEYFMWRFASAIRDN-------------------C------- 249 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~--~~~~~v~y~~-~e~F~~~~~~a~~~~-------------------~------- 249 (502)
.+|-||+|.|||.-...|-..+.+. .+..+|...- +-+=...+.++++.. +
T Consensus 165 ~vIsGGPGTGKTttV~~lLa~l~~~~~~~~l~I~LaAPTGKAAaRL~Esi~~~~~~l~~~~~~~~~~p~~a~TiHRLLg~ 244 (607)
T PRK10875 165 SVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGA 244 (607)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEHHHHCCC
T ss_conf 89967999877889999999999964589970899882289999999999878753476656663376556658975296
Q ss_pred ---HHHHHHH---HHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCC
Q ss_conf ---8999999---74031020544445317506999999999988569879996487567613630
Q gi|254780627|r 250 ---ALNLKDS---LRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 (502)
Q Consensus 250 ---~~~fr~~---~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~ 309 (502)
...||.. .-.+|+|+||-.=.+. .+-+..+++++ ..+.++|+-+| |.+|..++
T Consensus 245 ~p~~~~f~~~~~nPL~~DvlIVDEASMVD----l~Lm~~LL~Al-p~~aRLILvGD--~dQLpSVg 303 (607)
T PRK10875 245 QPGSQRLRYHAGNPLHLDVLVVDEASMID----LPMMSRLIDAL-PDHARVIFLGD--RDQLASVE 303 (607)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCHHHH----HHHHHHHHHHC-CCCCEEEEECC--HHHCCCCC
T ss_conf 78987656577999988989990733665----99999999828-99988999656--23247888
No 298
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.07 E-value=0.33 Score=28.57 Aligned_cols=126 Identities=17% Similarity=0.221 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CEEEEECCCCHHHHCC--------CCHHHHHHHHCCEEEEECCCCH
Q ss_conf 31020544445317506999999999988569--8799964875676136--------3034576530211577515888
Q gi|254780627|r 260 IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSA--KQVVAAADRPPSELES--------LDPRIRSRLQGGVSVPLGLHDY 329 (502)
Q Consensus 260 ~DvLliDDiqfl~gk~tqee~f~~~n~l~~~g--kqiv~tsd~~P~~l~~--------l~~rL~SR~~~Gl~~~i~~Pd~ 329 (502)
.-||-|||+|.|- -|-|..+|.-.+.. --||++++|--..+.| ++.-|..|+ |++...|-..
T Consensus 292 pGVLFIDEvHmLD-----IE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl---lII~t~py~~ 363 (450)
T COG1224 292 PGVLFIDEVHMLD-----IECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRL---LIISTRPYSR 363 (450)
T ss_pred CCEEEEECHHHHH-----HHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCCCCCHHHHHHE---EEEECCCCCH
T ss_conf 3428973213455-----7899999987631467579997177500121667768888987666225---6774477988
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC-CCHHHHHHHHHH--HHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999999999998864311689789899999985027-888999999999--999863024687788999998
Q gi|254780627|r 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT-TSGRELDGAFNQ--LVFRHSFAPILTAEIADELLS 398 (502)
Q Consensus 330 e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~-~~vR~Legal~~--l~~~~~~~~~~~~~~~~~~l~ 398 (502)
+.-..||+.++ ...++.|++++++||+.--. +|.|----.|.- +.|...-++.+..+.+.++-.
T Consensus 364 ~EireIi~iRa-----~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~ 430 (450)
T COG1224 364 EEIREIIRIRA-----KEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKE 430 (450)
T ss_pred HHHHHHHHHHH-----HHHCCCCCHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHCCCEEEHHHHHHHHH
T ss_conf 99999999764-----35403048889999975150344899998616888999871797465667999999
No 299
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.07 E-value=0.17 Score=30.71 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 89862788885799999999998
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASI 221 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~ 221 (502)
+-|-|+.|.|||-||+.|+-.+.
T Consensus 40 ~~l~GpNGaGKTTLlr~l~Gl~~ 62 (214)
T PRK13543 40 LLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999879999999976977
No 300
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.04 E-value=0.046 Score=34.71 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8986278888579999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~ 220 (502)
+.|.|++|.|||-|++.+...+
T Consensus 32 vaivG~sGsGKSTLl~ll~gl~ 53 (229)
T cd03254 32 VAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999980999999996686
No 301
>TIGR00416 sms DNA repair protein RadA; InterPro: IPR004504 RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=95.03 E-value=0.028 Score=36.27 Aligned_cols=48 Identities=27% Similarity=0.436 Sum_probs=37.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH-HHHHHCC
Q ss_conf 8986278888579999999999863068816864698889999-9998619
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF-ASAIRDN 248 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~-~~a~~~~ 248 (502)
.+|=|.+|.||+-||=-+.-.+.++ ..+|+|+|+|+=..+. +.|.|=+
T Consensus 106 iLiGG~PG~GKSTLLLqV~~~LA~~--~~~~LYVsGEES~~Q~klRA~RLG 154 (481)
T TIGR00416 106 ILIGGDPGIGKSTLLLQVACQLAKN--SMKVLYVSGEESLQQIKLRATRLG 154 (481)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHCC
T ss_conf 9846889963567899999998404--881689972301677888875455
No 302
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.01 E-value=0.26 Score=29.31 Aligned_cols=98 Identities=17% Similarity=0.233 Sum_probs=56.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH-------HHHHHHHH-------C-CCHHH-HH-----HHH
Q ss_conf 8986278888579999999999863068816864698889-------99999986-------1-98899-99-----997
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM-------WRFASAIR-------D-NCALN-LK-----DSL 257 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~-------~~~~~a~~-------~-~~~~~-fr-----~~~ 257 (502)
..+.|++|.|||--+-=+++.+.++ +.+|..++++.|- ..|..-+. . .+..+ .+ .+.
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~~~~--~~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK--GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE 80 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9998999998899999999999976--99289997488757799999999997498599227755879999999999875
Q ss_pred HHCCHHHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 403102054444531750-69999999999885698799964
Q gi|254780627|r 258 RNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAA 298 (502)
Q Consensus 258 r~~DvLliDDiqfl~gk~-tqee~f~~~n~l~~~gkqiv~ts 298 (502)
+++|++|||--=...... --+|+-.+++........+|+.+
T Consensus 81 ~~~D~IlIDTaGr~~~d~~~~~el~~l~~~~~p~~~~LVl~a 122 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDA 122 (173)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 689989997888787999999999999864489721574246
No 303
>KOG2543 consensus
Probab=94.99 E-value=0.14 Score=31.23 Aligned_cols=161 Identities=19% Similarity=0.176 Sum_probs=82.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH-HHHHHH-HHHHHHC-------------C---CHHHHHHHHHH-
Q ss_conf 898627888857999999999986306881686469-888999-9999861-------------9---88999999740-
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA-EYFMWR-FASAIRD-------------N---CALNLKDSLRN- 259 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~-e~F~~~-~~~a~~~-------------~---~~~~fr~~~r~- 259 (502)
++|||.+|.|||-+++..=++. +..-+|+.+ |.|+.. +..+|-+ + ++..|-..|+.
T Consensus 33 ~~iyG~sgTGKT~~~r~~l~~~-----n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~ 107 (438)
T KOG2543 33 VHIYGHSGTGKTYLVRQLLRKL-----NLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQW 107 (438)
T ss_pred EEEECCCCCCHHHHHHHHHHHC-----CCCCEEEEHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7996147874559999998603-----78630541577516799999999873567874055542799999999999844
Q ss_pred --------CCHHHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCEEEEECC-CCHHHHCCCCHHHHHHHHC--CEEEEECCC
Q ss_conf --------3102054444531750-699999999998856987999648-7567613630345765302--115775158
Q gi|254780627|r 260 --------IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAAD-RPPSELESLDPRIRSRLQG--GVSVPLGLH 327 (502)
Q Consensus 260 --------~DvLliDDiqfl~gk~-tqee~f~~~n~l~~~gkqiv~tsd-~~P~~l~~l~~rL~SR~~~--Gl~~~i~~P 327 (502)
+=+|++|.++.|.... .--..+--.+.+.+..+-.|+.+- -+|+.-. +|.+- =.++-+..+
T Consensus 108 ~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~-------~n~g~~~i~~l~fP~Y 180 (438)
T KOG2543 108 PAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYL-------INTGTLEIVVLHFPQY 180 (438)
T ss_pred HHHHCCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH-------CCCCCCCCEEEECCCC
T ss_conf 776446744999974777663065078899998998737773699983266677752-------1467778647853877
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCH----HHHHHHHH---HCCCCHHHHHHHHHHHH
Q ss_conf 889999999999988643116897898----99999985---02788899999999999
Q gi|254780627|r 328 DYEMRFSILKNRLAISQKEDPKLNINE----EVLMHVAR---TVTTSGRELDGAFNQLV 379 (502)
Q Consensus 328 d~e~r~~Il~~k~~~~~~~~~~~~l~~----~v~~~la~---~~~~~vR~Legal~~l~ 379 (502)
..|+-..|+.+ .+++ .... .-+.++-+ ...+++++|...+....
T Consensus 181 s~~e~~~Il~~-------~~p~-~r~~~~ya~fl~v~l~vF~~~crd~~eL~~~~~~~w 231 (438)
T KOG2543 181 SVEETQVILSR-------DNPG-KRKLDVYAQFLHVLLQVFYMACRDVNELRSLISLAW 231 (438)
T ss_pred CHHHHHHHHHC-------CCCC-CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 88999999841-------7831-000689999999999999999678999999999987
No 304
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=94.98 E-value=0.3 Score=28.89 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 898627888857999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANA 219 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~ 219 (502)
+-|-|++|.|||-|++.+.--
T Consensus 36 v~IiG~nGsGKSTL~k~l~Gl 56 (304)
T PRK13651 36 IAIIGQTGSGKTTFIEHLNAL 56 (304)
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999879998599999999669
No 305
>KOG1942 consensus
Probab=94.95 E-value=0.34 Score=28.49 Aligned_cols=126 Identities=24% Similarity=0.229 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-C-CEEEEECCCCHHHHCC---------CCHHHHHHHHCCEEEEECCCC
Q ss_conf 3102054444531750699999999998856-9-8799964875676136---------303457653021157751588
Q gi|254780627|r 260 IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDS-A-KQVVAAADRPPSELES---------LDPRIRSRLQGGVSVPLGLHD 328 (502)
Q Consensus 260 ~DvLliDDiqfl~gk~tqee~f~~~n~l~~~-g-kqiv~tsd~~P~~l~~---------l~~rL~SR~~~Gl~~~i~~Pd 328 (502)
-.||.||.+|.|- -|-|.-++.-.++ = --+||+|.|--.-+.| +..-|..|+ |++...+-+
T Consensus 297 PGVLFIDEVhMLD-----iEcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl---~Iirt~~y~ 368 (456)
T KOG1942 297 PGVLFIDEVHMLD-----IECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL---LIIRTLPYD 368 (456)
T ss_pred CCCEEEEEHHHHH-----HHHHHHHHHHHCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCHHHHHHE---EEEEECCCC
T ss_conf 7626863013242-----69999999986277875699962776102217767878788997786126---678603699
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHH-CC-CCCHHHHHHHHH
Q ss_conf 8999999999998864311689789899999985027-8889999999999998630-24-687788999998
Q gi|254780627|r 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT-TSGRELDGAFNQLVFRHSF-AP-ILTAEIADELLS 398 (502)
Q Consensus 329 ~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~-~~vR~Legal~~l~~~~~~-~~-~~~~~~~~~~l~ 398 (502)
.+....|++.+ +..+++.++++.++++++--+ ++.|--...|.-....++. ++ .|..+.+.++-.
T Consensus 369 ~~e~r~Ii~~R-----a~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~ 436 (456)
T KOG1942 369 EEEIRQIIKIR-----AQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTE 436 (456)
T ss_pred HHHHHHHHHHH-----HHHHCCEECHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCCCEEECCCHHHHHH
T ss_conf 89999999998-----765142322889999876054145788988537888999871985343124899999
No 306
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.94 E-value=0.088 Score=32.70 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=28.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHH
Q ss_conf 89862788885799999999998630688168646988
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~ 236 (502)
.-|+|++|+|||-|+.-+-+.+.+.+.+..|+..-.|.
T Consensus 148 igIfggaGvGKTvLl~eli~n~a~~~~~v~V~a~IGER 185 (466)
T PRK09280 148 IGLFGGAGVGKTVLIMELINNIAKEHGGYSVFAGVGER 185 (466)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 98557999980089999999999865990999971423
No 307
>PRK13767 ATP-dependent helicase; Provisional
Probab=94.92 E-value=0.35 Score=28.47 Aligned_cols=43 Identities=16% Similarity=0.378 Sum_probs=17.7
Q ss_pred HHHHHHHCCHHHHHHHHHHCC-CC-HHHHH-HHHHHHHHHCCCEEE
Q ss_conf 999974031020544445317-50-69999-999999885698799
Q gi|254780627|r 253 LKDSLRNIDLLLIDDMQFLQG-KL-IQHEF-CHLLNSLLDSAKQVV 295 (502)
Q Consensus 253 fr~~~r~~DvLliDDiqfl~g-k~-tqee~-f~~~n~l~~~gkqiv 295 (502)
+++.++++..++||.+|-|.| |+ +|-.+ +..+..+....-|.|
T Consensus 166 ~~~~l~~l~~VIvDE~H~l~~~kRG~~l~l~L~RL~~~~~~~~~ri 211 (878)
T PRK13767 166 FREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELVGGEFVRI 211 (878)
T ss_pred HHHHHCCCCEEEECCCHHHHCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 9998558999998171675247745899999999998668998799
No 308
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.90 E-value=0.088 Score=32.70 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 89862788885799999999998
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASI 221 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~ 221 (502)
..|-|+.|.|||-||+.|..-..
T Consensus 29 ~~i~G~NGsGKSTLlk~i~Gl~~ 51 (195)
T PRK13541 29 TYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999819999999967988
No 309
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.87 E-value=0.13 Score=31.52 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=32.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
Q ss_conf 48986278888579999999999863068816864698889
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~ 238 (502)
-+++.|+.|.|||--+-=+++.+.++ +.+|..++++.|-
T Consensus 77 vI~lvG~~G~GKTTT~AKLA~~~~~~--~~kV~lia~DtyR 115 (270)
T PRK06731 77 TIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSR 115 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEEECCCC
T ss_conf 89998889898899999999999867--9908999838888
No 310
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.83 E-value=0.082 Score=32.89 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8986278888579999999999863
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKR 223 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~ 223 (502)
+-|-|+||.|||-|++.+.......
T Consensus 344 vaIVG~SGsGKSTLl~LL~g~y~p~ 368 (569)
T PRK10789 344 LGICGPTGSGKSTLLSLIQRHFDVS 368 (569)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 9987999998799999999776426
No 311
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=94.82 E-value=0.39 Score=28.11 Aligned_cols=101 Identities=12% Similarity=0.232 Sum_probs=66.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH---HHHHHHHHCCCH-----HHHHHHHHHCCHHHHHHHHH
Q ss_conf 8986278888579999999999863068816864698889---999999861988-----99999974031020544445
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM---WRFASAIRDNCA-----LNLKDSLRNIDLLLIDDMQF 270 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~---~~~~~a~~~~~~-----~~fr~~~r~~DvLliDDiqf 270 (502)
+.|+|-++.|||+..+.+..++.++ +.+|.+++.+.+. +.|-.+-.++.+ .+.++..-.-+++++|+.-.
T Consensus 2 ivl~G~P~SGKSt~A~~L~~~l~~~--~~~v~vi~d~~~~~~~~~y~~s~~Ek~~R~~l~s~v~r~Ls~~~iVIlD~~NY 79 (266)
T pfam08433 2 IILTGLPSSGKSTRAKELAKYLEEK--GYDVIVISDESLGIESDDYKDSKKEKFLRGSLRSAVKRDLSKNTIVIVDSLNY 79 (266)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 7985799996889999999999975--99389978001267531000104789999999999987516688899548740
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 31750699999999998856987999648756761
Q gi|254780627|r 271 LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 (502)
Q Consensus 271 l~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l 305 (502)
+.|- .=|||+.-. ...-.+.++-++.++...
T Consensus 80 iKG~--RYEL~C~Ak--~~~t~~c~v~~~~p~e~~ 110 (266)
T pfam08433 80 IKGF--RYELYCIAK--EAKTTYCVVYCKAPLDTC 110 (266)
T ss_pred HHHH--HHHHHHHHH--HCCCCEEEEEECCCHHHH
T ss_conf 4568--999999998--638884899968998999
No 312
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=94.80 E-value=0.25 Score=29.51 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=39.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE-HHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf 489862788885799999999998630688168646-98889999999861988999999740310205444453175
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT-AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~-~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk 274 (502)
...|..++|.|||..+-++..++.+. ..+++++. ......+.. ++| ++++|-.|-....
T Consensus 20 ~~~i~~pTGsGKT~~~~~~i~~~~~~--~~~~lvlvp~~~L~~Q~~--------~~~--------lii~DE~H~~~a~ 79 (103)
T pfam04851 20 RGLIVMATGSGKTLTAAKLIARLLKG--KKKVLFLVPRKDLLEQAL--------EEF--------VIIIDEAHHSSAK 79 (103)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHH--------HHH--------HHHHHHHHHCCCH
T ss_conf 86999589998799999999999846--992999908299999999--------965--------6460163523537
No 313
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=94.79 E-value=0.39 Score=28.07 Aligned_cols=154 Identities=18% Similarity=0.294 Sum_probs=106.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH--HHHHHHHHHHHCCCHHHHHHHHHH--CCHHHHHHHHHHC--C
Q ss_conf 986278888579999999999863068816864698--889999999861988999999740--3102054444531--7
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE--YFMWRFASAIRDNCALNLKDSLRN--IDLLLIDDMQFLQ--G 273 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e--~F~~~~~~a~~~~~~~~fr~~~r~--~DvLliDDiqfl~--g 273 (502)
..-|+||+|||---.-||.=+.+-+==.|=..+-+| |.+=||| .++...-|+..+. =-||.||--=-|+ |
T Consensus 46 iFKGNPGTGKTTVAR~~gklf~emnvL~KGH~iE~ERADLVGEYI----GHTAqkTRe~~kkA~GGvLFiDEAYSLaRGG 121 (261)
T TIGR02881 46 IFKGNPGTGKTTVARLLGKLFKEMNVLSKGHLIEVERADLVGEYI----GHTAQKTREVIKKALGGVLFIDEAYSLARGG 121 (261)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC----CCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf 742786684389999999998533756788678876222122320----3004899999998638800557777761488
Q ss_pred -CC-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHC---CCCHHHHHHHHCCEEEEECCCCHHH--HHHHHHHHHHHHHHH
Q ss_conf -50-6999999999988569879996487567613---6303457653021157751588899--999999999886431
Q gi|254780627|r 274 -KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELE---SLDPRIRSRLQGGVSVPLGLHDYEM--RFSILKNRLAISQKE 346 (502)
Q Consensus 274 -k~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~---~l~~rL~SR~~~Gl~~~i~~Pd~e~--r~~Il~~k~~~~~~~ 346 (502)
|- =.|-.=++..++-++....|+---.+|.|+. .+.|-|.|||- ..|+=|||.+ =+.|+++. .+
T Consensus 122 EKDFGKEAIDtLVK~mEd~~~~lvlILAGY~~EM~yFL~~NPGL~SRFP----i~i~FPdY~~eeL~~Ia~~m-----~~ 192 (261)
T TIGR02881 122 EKDFGKEAIDTLVKAMEDQRNELVLILAGYSDEMDYFLSLNPGLRSRFP----ISIDFPDYTVEELMEIAERM-----VK 192 (261)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCC----CEEECCCCCHHHHHHHHHHH-----HH
T ss_conf 8876620888999987615698689970876899998620779777665----05418899888999999999-----86
Q ss_pred CCCCCCCHHHHHHHHHHCCC
Q ss_conf 16897898999999850278
Q gi|254780627|r 347 DPKLNINEEVLMHVARTVTT 366 (502)
Q Consensus 347 ~~~~~l~~~v~~~la~~~~~ 366 (502)
++.+.|++++...|-.++..
T Consensus 193 ~ReY~Lt~~A~~~lr~~l~~ 212 (261)
T TIGR02881 193 EREYKLTEEAKWKLREHLAK 212 (261)
T ss_pred HHHHCCCHHHHHHHHHHHHH
T ss_conf 46422578899999999741
No 314
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.79 E-value=0.21 Score=30.07 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 898627888857999999999986
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIK 222 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~ 222 (502)
+=|-|+.|.|||-|++.|..-...
T Consensus 29 ~gllG~NGaGKTTll~~i~Gl~~p 52 (210)
T cd03269 29 FGLLGPNGAGKTTTIRMILGIILP 52 (210)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 999989998499999999600266
No 315
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.79 E-value=0.098 Score=32.35 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=13.5
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 898627888857999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANA 219 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~ 219 (502)
+-|-|++|.|||-|++.|.--
T Consensus 31 vaiiG~nGsGKSTL~~~l~Gl 51 (274)
T PRK13644 31 IGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999998099999999706
No 316
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.78 E-value=0.063 Score=33.74 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8986278888579999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~ 220 (502)
.-|.|++|.|||-|++.+..-+
T Consensus 31 i~IvG~sGsGKSTLl~ll~gl~ 52 (234)
T cd03251 31 VALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999899982999999996676
No 317
>COG1204 Superfamily II helicase [General function prediction only]
Probab=94.78 E-value=0.096 Score=32.43 Aligned_cols=11 Identities=36% Similarity=0.474 Sum_probs=5.5
Q ss_pred CCEEEEEECCH
Q ss_conf 99898983898
Q gi|254780627|r 69 HNIVHLSVPTN 79 (502)
Q Consensus 69 ~~~L~L~vPn~ 79 (502)
++.+.|.+|+.
T Consensus 47 ~~N~li~aPTg 57 (766)
T COG1204 47 DENVLISAPTG 57 (766)
T ss_pred CCCEEEECCCC
T ss_conf 98679976788
No 318
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.22 Score=29.82 Aligned_cols=75 Identities=11% Similarity=0.079 Sum_probs=33.5
Q ss_pred CCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHH-----HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
Q ss_conf 987999648756761363034576530211577515888999-----999999998864311689789899999985027
Q gi|254780627|r 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR-----FSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 (502)
Q Consensus 291 gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r-----~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~ 365 (502)
.+-++|.+ ||..-+.+-.+-+......-...+..|++-.. -+-++..........+.+.+=||+-.+.+.+-.
T Consensus 276 ~~giLl~G--pPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iifiDEiDs~~~~r~~ 353 (494)
T COG0464 276 PKGVLLYG--PPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGP 353 (494)
T ss_pred CCEEEEEC--CCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCC
T ss_conf 83699988--9997589999998754498248843355540776599999999999999669988974886667412899
Q ss_pred CC
Q ss_conf 88
Q gi|254780627|r 366 TS 367 (502)
Q Consensus 366 ~~ 367 (502)
++
T Consensus 354 ~~ 355 (494)
T COG0464 354 SE 355 (494)
T ss_pred CC
T ss_conf 87
No 319
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.77 E-value=0.078 Score=33.05 Aligned_cols=31 Identities=32% Similarity=0.544 Sum_probs=24.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 8986278888579999999999863068816864
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~ 232 (502)
+.|.|++|.|||.||.|+..++- |+.+++.+
T Consensus 28 IlIsG~tGSGKTTll~al~~~i~---~~~rivti 58 (186)
T cd01130 28 ILISGGTGSGKTTLLNALLAFIP---PDERIITI 58 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHHCC---CCCCEEEE
T ss_conf 99989999989999999996133---45645984
No 320
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.76 E-value=0.34 Score=28.56 Aligned_cols=100 Identities=24% Similarity=0.372 Sum_probs=63.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE-------HHHHHHHHHHHHHCC--C----H-------------
Q ss_conf 5489862788885799999999998630688168646-------988899999998619--8----8-------------
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT-------AEYFMWRFASAIRDN--C----A------------- 250 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~-------~e~F~~~~~~a~~~~--~----~------------- 250 (502)
-=+.|..|.|.|||-|+-.-.- ...++..|..++ .+.|++.++.|++.- + .
T Consensus 38 RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~ 114 (894)
T COG2909 38 RLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLE 114 (894)
T ss_pred EEEEEECCCCCCHHHHHHHHHH---HCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHH
T ss_conf 3899867887758899999998---6476554357645776678899999999999874723247899998733556599
Q ss_pred ---HHHHHHHHHC---CHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CCEEEEECC-CCHH
Q ss_conf ---9999997403---102054444531750699999999998856---987999648-7567
Q gi|254780627|r 251 ---LNLKDSLRNI---DLLLIDDMQFLQGKLIQHEFCHLLNSLLDS---AKQVVAAAD-RPPS 303 (502)
Q Consensus 251 ---~~fr~~~r~~---DvLliDDiqfl~gk~tqee~f~~~n~l~~~---gkqiv~tsd-~~P~ 303 (502)
+.+..-..++ =.|++||-|.+.+.... +..+.|+++ |=+.|++|- +||-
T Consensus 115 ~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~----~~l~fLl~~~P~~l~lvv~SR~rP~l 173 (894)
T COG2909 115 SLLSSLLNELASYEGPLYLVLDDYHLISDPALH----EALRFLLKHAPENLTLVVTSRSRPQL 173 (894)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH----HHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 999999999875149649995353225760289----99999997199874999976568887
No 321
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.69 E-value=0.17 Score=30.60 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8986278888579999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~ 220 (502)
+-|.|++|.|||-|+..|....
T Consensus 33 v~ivG~sGsGKSTLl~ll~gl~ 54 (221)
T cd03244 33 VGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999998999999996797
No 322
>PRK07667 uridine kinase; Provisional
Probab=94.68 E-value=0.05 Score=34.42 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=31.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH
Q ss_conf 8986278888579999999999863068816864698889999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~ 241 (502)
+=|-|++|.|||+|.+.+..++.+. +..+..++-++|...-
T Consensus 17 IgIaG~sgSGKTTla~~L~~~l~~~--~~~v~v~~~Dd~~~~~ 57 (190)
T PRK07667 17 LGIDGLSRSGKTTFVANLKENMKQE--GIPFHIFHIDDHIVER 57 (190)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCH
T ss_conf 9977989788999999999998665--9837999666242658
No 323
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=94.67 E-value=0.36 Score=28.33 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=18.7
Q ss_pred HCCCCC---HHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCH
Q ss_conf 328861---4789999999982410013655555489862788885
Q gi|254780627|r 167 FIEGSS---NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 (502)
Q Consensus 167 FVVG~s---N~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGK 209 (502)
||+-.. |.-|+.|-+..-|.|.. +-+||.--+-..|
T Consensus 123 ~IIDeah~Lt~~A~NALLKtLEEPP~-------~viFILaTtep~k 161 (563)
T PRK06674 123 YIIDEVHMLSIGAFNALLKTLEEPPG-------HVIFILATTEPHK 161 (563)
T ss_pred EEEECHHHCCHHHHHHHHHHHHCCCC-------CEEEEEECCCHHH
T ss_conf 99854563799999999998638875-------6499996599475
No 324
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=94.67 E-value=0.061 Score=33.84 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 4898627888857999999999
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANA 219 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~ 219 (502)
-+|+||.||=||+|+|.-.-.+
T Consensus 34 lIfLCGSvGDGKShILs~~k~~ 55 (504)
T TIGR03238 34 LLFLCGSSGDGKSEILAENKRK 55 (504)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999658888689999998898
No 325
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.64 E-value=0.43 Score=27.82 Aligned_cols=134 Identities=16% Similarity=0.201 Sum_probs=73.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHH-------------CCCCCEEEEEHHHHHHHHHHHHHCCCHHH---HHHHH---
Q ss_conf 548986278888579999999999863-------------06881686469888999999986198899---99997---
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKR-------------QPNLRVVYLTAEYFMWRFASAIRDNCALN---LKDSL--- 257 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~-------------~~~~~v~y~~~e~F~~~~~~a~~~~~~~~---fr~~~--- 257 (502)
+-+.++|+.|.||+-+..+.+..++.. ||+. ..+..|.= -+...++. .+++.
T Consensus 20 HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~p~~~~~i~~~~HPD~--~~i~pe~k-------~~~~~Id~iR~l~~~i~~~ 90 (290)
T PRK05917 20 SAILLHGQDLSNLSQYAYELASLILLESSPEAQYKISQKIHPDI--HEFFPEGK-------GRLHSIETPRAIKKQIWIH 90 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCE--EEECCCCC-------CCCCCHHHHHHHHHHHCCC
T ss_conf 06876899986599999999999857899616889874689985--99615777-------8878678999999996418
Q ss_pred ---HHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHH
Q ss_conf ---40310205444453175069999999999885698799964875676136303457653021157751588899999
Q gi|254780627|r 258 ---RNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 (502)
Q Consensus 258 ---r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~ 334 (502)
-..-|.+||+.|.+. ...+.-|+-++.+=-.+- -+|++++.+ ..+-+-++||.+. ..| |-.|
T Consensus 91 p~~g~~KV~IId~Ad~Mn-~~AaNALLKtLEEPP~~t-vfILit~~~----~~lLpTI~SRCQ~---I~i--~~~e---- 155 (290)
T PRK05917 91 PYEANYKIYIIHEADRMT-LDAISAFLKVLEDPPKHS-VIILTSAKP----QRLPPTIRSRSLS---IHI--PGEE---- 155 (290)
T ss_pred CCCCCCEEEEECCHHHHC-HHHHHHHHHHHCCCCCCE-EEEEEECCH----HHCCHHHHHCCCE---EEC--CCCC----
T ss_conf 646882699975677638-999999999734798785-999986992----5482377633511---677--7620----
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCH
Q ss_conf 9999998864311689789899999985027888
Q gi|254780627|r 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 (502)
Q Consensus 335 Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~v 368 (502)
...+.++.++||+.-..|+.
T Consensus 156 --------------~~~i~~e~~~~l~~~a~g~~ 175 (290)
T PRK05917 156 --------------KTLPSKEDIAYLIRYAQGKE 175 (290)
T ss_pred --------------CCCCCHHHHHHHHHHHCCCH
T ss_conf --------------13478899999999846973
No 326
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.64 E-value=0.031 Score=35.87 Aligned_cols=123 Identities=19% Similarity=0.202 Sum_probs=73.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHC-----CCCCEEEEEHHHHHHHHHHHHHCC---CHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 89862788885799999999998630-----688168646988899999998619---8899999974031020544445
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQ-----PNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLIDDMQF 270 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~-----~~~~v~y~~~e~F~~~~~~a~~~~---~~~~fr~~~r~~DvLliDDiqf 270 (502)
+=|-|++|.|||-|++.|.-...... ++.++.|.. ++++ +..+ .+.--|.-.++.|+|++|- -
T Consensus 28 v~ilGpNGaGKSTllk~i~G~l~p~~G~i~~~g~~~~~~p------q~~~-LSGGqrQRv~iAral~~~p~lllLDE--P 98 (177)
T cd03222 28 IGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKP------QYID-LSGGELQRVAIAAALLRNATFYLFDE--P 98 (177)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCCCEECCC------CCCC-CCHHHHHHHHHHHHHHCCCCEEEECC--C
T ss_conf 9998999999999999996886788994666686122155------5150-79899999999999823999999748--8
Q ss_pred HCCC--CHHHHHHHHHHHHHHCCC-EEEEECCCCHHHHCCCCHHHHHHHHCCEEE-EECCCCHHHH
Q ss_conf 3175--069999999999885698-799964875676136303457653021157-7515888999
Q gi|254780627|r 271 LQGK--LIQHEFCHLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGGVSV-PLGLHDYEMR 332 (502)
Q Consensus 271 l~gk--~tqee~f~~~n~l~~~gk-qiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~-~i~~Pd~e~r 332 (502)
.++= .++.++..++..+.++++ .+|+.+ ....+...+.||++== .+|..+ ....|-..++
T Consensus 99 ts~LD~~~r~~i~~~ik~l~~~~~~Tvl~vs-Hdl~~a~~~aDrI~vl-~g~~~~~g~~~~~~~~~ 162 (177)
T cd03222 99 SAYLDIEQRLNAARAIRRLSEEGKKTALVVE-HDLAVLDYLSDRIHVF-EGEPGVYGIASQPKGTR 162 (177)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC-CCHHHHHHHCCEEEEE-ECCCCEEEEECCHHHHH
T ss_conf 6538999999999999999996597799985-8899999869999999-38982698848814540
No 327
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=94.63 E-value=0.11 Score=31.88 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8986278888579999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~ 220 (502)
+-|-|+.|.|||-|+.+|..-+
T Consensus 31 ~~liGpNGaGKSTLlk~i~Gl~ 52 (255)
T PRK11231 31 TALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999981999999997598
No 328
>PTZ00301 uridine kinase; Provisional
Probab=94.63 E-value=0.04 Score=35.11 Aligned_cols=121 Identities=16% Similarity=0.208 Sum_probs=61.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCC-------HHHHHHHHHH
Q ss_conf 898627888857999999999986306881686469888999999986198899999974031-------0205444453
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID-------LLLIDDMQFL 271 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~D-------vLliDDiqfl 271 (502)
.=|.|+||.|||.|.+.|..++..+....+|..++-+.|-.+. .....-...+-|.| =||.++++-|
T Consensus 6 IgIaGgSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~Yy~d~------~~~~~~~~~~~NfDhP~a~D~dLl~~~L~~L 79 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQ------SNIPESERAYTNYDHPKSLEHDLLTTHLREL 79 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC------CCCCHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9996887678999999999998761499807998367667787------6588656278899982303699999999999
Q ss_pred C-CCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH---CC---C-CHHHHHHHHCCEEEEECCCCHHHHH
Q ss_conf 1-750699999999998856987999648756761---36---3-0345765302115775158889999
Q gi|254780627|r 272 Q-GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSEL---ES---L-DPRIRSRLQGGVSVPLGLHDYEMRF 333 (502)
Q Consensus 272 ~-gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l---~~---l-~~rL~SR~~~Gl~~~i~~Pd~e~r~ 333 (502)
. |+...--.+ -|..-...++...+ .|.++ .| | +++|+..|.- .+=|+.|+ +.|+
T Consensus 80 k~Gk~I~~P~Y-df~~h~R~~~~~~i----~p~~vIIvEGi~~l~~~~lr~l~Dl--kIFvd~~~-dirl 141 (210)
T PTZ00301 80 KSGKTVQIPQY-DYVHHTRSDTAVTM----TPKSVLIVEGILLFTNAELRNEMDC--LIFVDTPL-DICL 141 (210)
T ss_pred HCCCCEECCCC-CCCCCCCCCCEEEE----CCCCEEEEEEEHHCCCHHHHHHHCE--EEEECCCH-HHHH
T ss_conf 76996344665-55677667970896----6885699971043078989977424--57734872-3788
No 329
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=94.62 E-value=0.1 Score=32.15 Aligned_cols=105 Identities=19% Similarity=0.245 Sum_probs=62.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHC-------------CCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHH
Q ss_conf 89862788885799999999998630-------------68816864698889999999861988999999740310205
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQ-------------PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~-------------~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLli 265 (502)
.-+.||+|+|||-|+.+.--+.-+++ ...|+-++-+-.=.+.|++. .|.-+.=+|+|
T Consensus 42 VavvGPpgvGKtTLiksLvk~ytk~~l~~i~GPiTvvs~K~rRiTfiEc~nDi~smiD~----------AKvADlVLl~i 111 (225)
T cd01882 42 VAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTGKKRRLTFIECPNDINAMIDI----------AKVADLVLLLI 111 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCHHHHHHHH----------HHHHHEEEEEE
T ss_conf 99989899778899999999985443755788879994684268999748609999878----------87643368886
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEC------CCCHHHHCCCCHHHHHHHHC
Q ss_conf 444453175069999999999885698799964------87567613630345765302
Q gi|254780627|r 266 DDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAA------DRPPSELESLDPRIRSRLQG 318 (502)
Q Consensus 266 DDiqfl~gk~tqee~f~~~n~l~~~gkqiv~ts------d~~P~~l~~l~~rL~SR~~~ 318 (502)
|-=- .-..|-|..+|-|..+|=.-|+.- -+.++.|...-.||..||-.
T Consensus 112 D~s~-----GfEmEtfEfLnilq~hG~PkV~GVltHlD~fk~~k~lrk~KK~lk~RFwt 165 (225)
T cd01882 112 DASF-----GFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWT 165 (225)
T ss_pred CCCC-----CEEEEHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 1665-----53520899999999759994378854431015578899999999999999
No 330
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=94.60 E-value=0.11 Score=31.97 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=57.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHH-----------HHHHCCCHHHH---HHHH-----H
Q ss_conf 489862788885799999999998630688168646988899999-----------99861988999---9997-----4
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA-----------SAIRDNCALNL---KDSL-----R 258 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~-----------~a~~~~~~~~f---r~~~-----r 258 (502)
-+.|.||.|.|||-+|.+||--+.-......+ .+......++ ..+ .+...++ +..+ .
T Consensus 23 ~~iItGpN~sGKSt~Lr~i~l~~~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l-Sgg~~~~~~l~~~l~~~~~~ 98 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRR---RSGVKAGCIVAAVSAELIFTRLQL-SGGEKELSALALILALASLK 98 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCC---CHHHHCCCCCHHHEEEEEECCCCC-CCCHHHHHHHHHHHHHCCCC
T ss_conf 89998998775799999999999986326775---255542776402305766412000-54299999999999854248
Q ss_pred HCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHH
Q ss_conf 03102054444531750--69999999999885698799964875676136303457
Q gi|254780627|r 259 NIDLLLIDDMQFLQGKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 (502)
Q Consensus 259 ~~DvLliDDiqfl~gk~--tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~ 313 (502)
...++|+|.+ .+|-- .-..+...+-.+..+|.++|+++-. .+|..+.+|+.
T Consensus 99 ~~~lillDE~--~~Gtd~~~~~~l~~~i~~~~~~~~~~i~tTH~--~eL~~lad~~~ 151 (162)
T cd03227 99 PRPLYILDEI--DRGLDPRDGQALAEAILEHLVKGAQVIVITHL--PELAELADKLI 151 (162)
T ss_pred CCCEEEECCC--CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHHHHHC
T ss_conf 9848996365--57999889999999999999769989997973--99999987500
No 331
>PRK04132 replication factor C small subunit; Provisional
Probab=94.60 E-value=0.44 Score=27.75 Aligned_cols=108 Identities=17% Similarity=0.062 Sum_probs=70.4
Q ss_pred HHHH--HHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 6999--99999998856987999648756761363034576530211577515888999999999998864311689789
Q gi|254780627|r 276 IQHE--FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 (502)
Q Consensus 276 tqee--~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~ 353 (502)
||+. -..-+.+...++...+++|.-.-+=+ +-+.||+. +..-.|-..+.-..-|+. -++.+++.++
T Consensus 658 t~d~~~~~~r~~~~~~~~~~~~~SCNYsSKII----ePIQSRCa---vFRF~PL~~e~v~~RL~~-----Ia~~Egv~it 725 (863)
T PRK04132 658 YKDVYDITCHNDHSFIANGFVSHNCNYSSKII----EPIQSRCA---IFRFRPLRDEDIAKRLRY-----IAENEGLELT 725 (863)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC----CHHHCCEE---EEEECCCCHHHHHHHHHH-----HHHHCCCCCC
T ss_conf 57799999877876420561798667604074----16655624---788368999999999999-----9997499767
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 899999985027888999999999999863024687788999998
Q gi|254780627|r 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLS 398 (502)
Q Consensus 354 ~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~ 398 (502)
++.++-|..-..|+.|. |+|-|-+-+...+.+|.+.+-.+.+
T Consensus 726 edGleAI~~~aeGDMRk---AIN~LQsaa~~~~~Vt~d~Vy~v~~ 767 (863)
T PRK04132 726 EEGLQAILYVAEGDMRR---AINVLQAAAALDTKITDENVFKVAS 767 (863)
T ss_pred HHHHHHHHHHCCCCHHH---HHHHHHHHHHCCCCCCHHHHHHHCC
T ss_conf 78999999975674899---9999999986169878889999708
No 332
>smart00350 MCM minichromosome maintenance proteins.
Probab=94.58 E-value=0.44 Score=27.72 Aligned_cols=129 Identities=22% Similarity=0.244 Sum_probs=63.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH-HHHHH-HCCCHHHHH-----HHHHHCCHHHHHHHHHH
Q ss_conf 898627888857999999999986306881686469888999-99998-619889999-----99740310205444453
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR-FASAI-RDNCALNLK-----DSLRNIDLLLIDDMQFL 271 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~-~~~a~-~~~~~~~fr-----~~~r~~DvLliDDiqfl 271 (502)
+++-|.+|+|||.||+.+.. -.|. -+|+|+..=+.- +..++ ++....+|. --..+--+.+||.+.-+
T Consensus 239 iLLvGDPGtgKSqlLk~~~~----iapr--svytsG~gsS~aGLTaav~rd~~~ge~~leaGALVlAD~GiccIDEfdKm 312 (509)
T smart00350 239 ILLLGDPGTAKSQLLKYVEK----TAPR--AVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKM 312 (509)
T ss_pred EEEECCCCCCHHHHHHHHHH----HCCC--EEEEECCCCCCCCCEEEEEECCCCCCEEECCCCEECCCCCEEEEEEHHHC
T ss_conf 99846998236299999998----5886--06873444555770689998178883787256412056754785213207
Q ss_pred CCCCHHHHHHHHHHHHHHC--------------CCEEEEECCC----------CHHHHCCCCHHHHHHHHCCEEEEECCC
Q ss_conf 1750699999999998856--------------9879996487----------567613630345765302115775158
Q gi|254780627|r 272 QGKLIQHEFCHLLNSLLDS--------------AKQVVAAADR----------PPSELESLDPRIRSRLQGGVSVPLGLH 327 (502)
Q Consensus 272 ~gk~tqee~f~~~n~l~~~--------------gkqiv~tsd~----------~P~~l~~l~~rL~SR~~~Gl~~~i~~P 327 (502)
.. +.-..+..++-++ -+--|+++-. ++.+--+|++-|.|||--=.+. ...|
T Consensus 313 ~~----~dr~alhEaMEQQtisiaKaGi~~tL~aR~sVlAAaNP~~g~yd~~~s~~eni~l~~~LLSRFDLIf~l-~D~~ 387 (509)
T smart00350 313 DD----SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVV-LDEV 387 (509)
T ss_pred CH----HHHHHHHHHHHHCEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCHHHHCCCCHHHHHHCCEEEEE-ECCC
T ss_conf 87----789999999974877874375179985573599865565563788899999468980354102389996-1589
Q ss_pred CHHHHHHHHHH
Q ss_conf 88999999999
Q gi|254780627|r 328 DYEMRFSILKN 338 (502)
Q Consensus 328 d~e~r~~Il~~ 338 (502)
|.+.=..|.+.
T Consensus 388 ~~~~D~~ia~h 398 (509)
T smart00350 388 DEERDRELAKH 398 (509)
T ss_pred CHHHHHHHHHH
T ss_conf 87889999999
No 333
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.57 E-value=0.054 Score=34.19 Aligned_cols=88 Identities=24% Similarity=0.320 Sum_probs=51.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCC---C-C
Q ss_conf 98627888857999999999986306881686469888999999986198899999974031020544445317---5-0
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG---K-L 275 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~g---k-~ 275 (502)
.|-+|+..|||.|||.|+|.+..+||+..++-+=-++ |-..+.+|++..+ .+|.-= -|-.. . +
T Consensus 173 LIVAPPkaGKT~lLq~IA~aI~~N~Pe~~liVLLIDE---------RPEEVTdm~r~v~-~eV~aS---tfD~~~~~H~~ 239 (416)
T PRK09376 173 LIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDE---------RPEEVTDMQRSVK-GEVVAS---TFDEPAERHVQ 239 (416)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECC---------CCHHHHHHHHHCC-EEEEEE---CCCCCHHHHHH
T ss_conf 3756998754799999999998569971999999048---------9347778775046-189997---79998789999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 6999999999988569879996487
Q gi|254780627|r 276 IQHEFCHLLNSLLDSAKQVVAAADR 300 (502)
Q Consensus 276 tqee~f~~~n~l~~~gkqiv~tsd~ 300 (502)
..|.....-..|.+.|+-+|+--|.
T Consensus 240 vae~~lerAkRlvE~G~DVvillDS 264 (416)
T PRK09376 240 VAEMVIEKAKRLVEHGKDVVILLDS 264 (416)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9999999999998769978999731
No 334
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=94.45 E-value=0.47 Score=27.52 Aligned_cols=179 Identities=12% Similarity=0.093 Sum_probs=92.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-------------------HCCCCCEEEEEHHHHHHHHHHHHHCCCH----HHH
Q ss_conf 54898627888857999999999986-------------------3068816864698889999999861988----999
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIK-------------------RQPNLRVVYLTAEYFMWRFASAIRDNCA----LNL 253 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~-------------------~~~~~~v~y~~~e~F~~~~~~a~~~~~~----~~f 253 (502)
-||.|.|..|.|+--++-+.+-.++= .||+. ..+..|. .+++...+ ..|
T Consensus 9 halLl~~~~G~~~~~~~~~~~k~LlC~~~~~PCG~C~sC~~i~~g~HPD~--~~i~pe~------~sIkieqir~li~~l 80 (262)
T PRK05818 9 HPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDF--YLIFDQK------NPIKKEDALSIINKL 80 (262)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCE--EEEECCC------CCCCHHHHHHHHHHH
T ss_conf 50566448776469999999998622899999988862786755899977--9971664------557798999999998
Q ss_pred HHHH-H--HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHH
Q ss_conf 9997-4--031020544445317506999999999988569879996487567613630345765302115775158889
Q gi|254780627|r 254 KDSL-R--NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 (502)
Q Consensus 254 r~~~-r--~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e 330 (502)
-... . ..-|.+|||.+-+. ..+++-|+-++.+= ..+...|+++..+- .+-+-++||...=-+-.. +.+
T Consensus 81 ~~~s~e~~g~KV~II~~Ae~Mt-~~AANALLKtLEEP-p~nt~fIL~t~~~~----~LLPTIrSRC~~~~~~~~---~~~ 151 (262)
T PRK05818 81 NRPSVESNGKKIYIIYGIEKLN-KQSANSLLKLIEEP-PKNTYGIFTTRNEN----NILNTILSRCVQYVVLSK---EKK 151 (262)
T ss_pred HHCCCCCCCCEEEEECCHHHHC-HHHHHHHHHHHCCC-CCCEEEEEEECCHH----HCCCHHHHHCCCCCCCCH---HHH
T ss_conf 2114002884899987778749-99999999861289-87838999738814----373088877014466643---466
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999999886431168978989999998502-78889999999999998630246877889999987
Q gi|254780627|r 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTV-TTSGRELDGAFNQLVFRHSFAPILTAEIADELLSH 399 (502)
Q Consensus 331 ~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~-~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~ 399 (502)
.-.....+.. +...+..++..++-+++.. .|+||++--.+..+.++. ++.++..-++..++.
T Consensus 152 ~~~~~~~~~~-----~~~~i~~~~~s~de~~~~~~~gs~~~~l~il~~~i~~~--n~~~~~~~~~~l~~~ 214 (262)
T PRK05818 152 VPFKVESNDR-----YFQYILLSFYSVDEQLQAYNNGSFSKLKNIIETLINKK--NKLIQIHKAWILFKT 214 (262)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCCEEHHHHHHHHHC
T ss_conf 7888874088-----89876410110799998861676888999999998756--884339999999831
No 335
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.44 E-value=0.1 Score=32.30 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 898627888857999999999986
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIK 222 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~ 222 (502)
+-|-|++|.|||-|++.|..-+..
T Consensus 29 ~~iiG~nGaGKSTLl~~i~Gl~~p 52 (205)
T cd03226 29 IALTGKNGAGKTTLAKILAGLIKE 52 (205)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 999889999899999999568577
No 336
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=94.43 E-value=0.14 Score=31.20 Aligned_cols=60 Identities=18% Similarity=0.249 Sum_probs=36.2
Q ss_pred CHHHHHHHCC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 4478876328-8614789999999982410013655555489862788885799999999998630688168
Q gi|254780627|r 160 SRFVFSTFIE-GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 (502)
Q Consensus 160 pryTFDnFVV-G~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~ 230 (502)
..+|+|.++. |..+..-...-...++.-| -+.|.|++|.|||-+|.|+..++.+. +.+|+
T Consensus 111 ~~~tl~~L~~~g~~~~~~~~~L~~~v~~~~---------~ilIsG~TGSGKTT~l~all~~i~~~--~~rii 171 (283)
T pfam00437 111 RSLTLDDLGMTGAFDADIAEFLRQAVQARG---------NILVSGGTGSGKTTLLYALLNEINTD--DERIV 171 (283)
T ss_pred CCCCHHHHCCCCCCHHHHHHHHHHHHHCCC---------EEEEECCCCCCHHHHHHHHHHHCCCC--CCCEE
T ss_conf 789999973897785999999999998197---------59998899998899999999840877--76278
No 337
>KOG1803 consensus
Probab=94.42 E-value=0.068 Score=33.51 Aligned_cols=45 Identities=27% Similarity=0.343 Sum_probs=31.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH-HHHHHHHHH
Q ss_conf 54898627888857999999999986306881686469-888999999
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA-EYFMWRFAS 243 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~-e~F~~~~~~ 243 (502)
+|+-|+||+|.||||-|--|-..+.++. .+|+.+-+ -.=+...+.
T Consensus 202 ~l~~I~GPPGTGKT~TlvEiI~qlvk~~--k~VLVcaPSn~AVdNive 247 (649)
T KOG1803 202 DLLIIHGPPGTGKTRTLVEIISQLVKQK--KRVLVCAPSNVAVDNIVE 247 (649)
T ss_pred CCEEEECCCCCCCEEEHHHHHHHHHHCC--CEEEEECCCHHHHHHHHH
T ss_conf 8357557998884043999999999728--859997673678999998
No 338
>PRK07914 hypothetical protein; Reviewed
Probab=94.41 E-value=0.48 Score=27.46 Aligned_cols=179 Identities=16% Similarity=0.144 Sum_probs=93.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHH--CCCCCEEEEEHHHHHHH-HHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCH
Q ss_conf 986278888579999999999863--06881686469888999-999986198899999974031020544445317506
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKR--QPNLRVVYLTAEYFMWR-FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI 276 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~--~~~~~v~y~~~e~F~~~-~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~t 276 (502)
+|||+-.+=..--..++-..+... .|+..+.++.+.+.... +..+. .+.-|- +--+++|.+.+.. +|..
T Consensus 9 Li~G~E~~L~erav~~~~~~ar~~~~~~d~~~~~l~a~~~~~~~l~~~~---spSLFa----e~RlVvv~~~~~~-~~~~ 80 (320)
T PRK07914 9 LVLGDEELLVERAVAAVLRSARKRAGTADVPVDRLRAGDVSTYELAELL---SPSLFA----EERVVVLEAAAEA-GKDA 80 (320)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHH---CCCCCC----CCEEEEEECCCCC-CHHH
T ss_conf 9970819999999999999998503799843466214668888999871---867668----8449998361102-6889
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHC-CEEE-EECCC-CHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999999988569879996487567613630345765302-1157-75158-88999999999998864311689789
Q gi|254780627|r 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG-GVSV-PLGLH-DYEMRFSILKNRLAISQKEDPKLNIN 353 (502)
Q Consensus 277 qee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~-Gl~~-~i~~P-d~e~r~~Il~~k~~~~~~~~~~~~l~ 353 (502)
.+++..-+... ..+-.+|+.....++ ..+|..-+.. |-.+ +..++ ....+...++.. +...|..++
T Consensus 81 ~~~l~~yl~~p-~~~t~LV~~h~gg~k-----~Kkl~~~lkk~ga~v~~~~~l~k~~e~~~~v~~e-----~~~~g~~i~ 149 (320)
T PRK07914 81 VALIESAAADL-PAGTVLVVVHSGGGR-----AKALANQLRKLGAQVHPCARITKASERADFVRKE-----FRSLRVKVD 149 (320)
T ss_pred HHHHHHHHCCC-CCCEEEEEEECCCCH-----HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH-----HHHCCCCCC
T ss_conf 99999985299-998089997058740-----4679999997699898655658868999999999-----998599999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 8999999850278889999999999998630246877889999987
Q gi|254780627|r 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSH 399 (502)
Q Consensus 354 ~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~ 399 (502)
++++..|.+.+.+|.|+|-+++.+|.++ .++.||.+.+.+....
T Consensus 150 ~~A~~~Lv~~vG~dl~eLaae~~qL~~d--~~g~It~~~V~~~~~g 193 (320)
T PRK07914 150 DETVTALLDAVGSDIRELASACSQLVAD--TGGAVDAAAVRRYHSG 193 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHCC
T ss_conf 9999999999862399999999999605--7997369999999289
No 339
>KOG0066 consensus
Probab=94.37 E-value=0.15 Score=31.01 Aligned_cols=119 Identities=19% Similarity=0.257 Sum_probs=71.8
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH--HHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC-CHH
Q ss_conf 8627888857999999999986306881686469888999--9999861988999999740310205444453175-069
Q gi|254780627|r 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR--FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 (502)
Q Consensus 201 i~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~--~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk-~tq 277 (502)
+.||-|.|||.||..||+..+.--|+.-|+|+--|--..+ -|.++-.-+..... -+...+-|+ -|+-+|+ ..+
T Consensus 295 LVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~-lLeee~~L~---~q~e~Gd~taa 370 (807)
T KOG0066 295 LVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLA-LLEEEAKLM---SQIEEGDTTAA 370 (807)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHH-HHHHHHHHH---HHHHCCCHHHH
T ss_conf 06789876377999987521168998736865102120571888999986189999-999999999---88871753899
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHCC------CCHHHHHHHHCCEEEEEC
Q ss_conf 999999999885698799964875676136------303457653021157751
Q gi|254780627|r 278 HEFCHLLNSLLDSAKQVVAAADRPPSELES------LDPRIRSRLQGGVSVPLG 325 (502)
Q Consensus 278 ee~f~~~n~l~~~gkqiv~tsd~~P~~l~~------l~~rL~SR~~~Gl~~~i~ 325 (502)
|++-.+++.|..-|-.-- --|+-.-|.| +.+|-...|++|--..+.
T Consensus 371 Erl~~v~~ELraiGA~sA--EarARRILAGLGFskEMQ~rPt~kFSGGWRMRvS 422 (807)
T KOG0066 371 ERLKEVADELRAIGADSA--EARARRILAGLGFSKEMQERPTTKFSGGWRMRVS 422 (807)
T ss_pred HHHHHHHHHHHHHCCCCC--HHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEHH
T ss_conf 999999999987321200--0678889861488966850876555784465206
No 340
>KOG0243 consensus
Probab=94.36 E-value=0.064 Score=33.66 Aligned_cols=53 Identities=25% Similarity=0.450 Sum_probs=33.0
Q ss_pred CCCHHHHHHHCCCCCHHHH--H-HHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 7644788763288614789--9-99999982410013655555489862788885799999
Q gi|254780627|r 158 LDSRFVFSTFIEGSSNRVA--L-TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 (502)
Q Consensus 158 LNpryTFDnFVVG~sN~lA--~-aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~a 215 (502)
+...||||- |-||.-+.- | .|+..+.+.--.+|.+ ..|-||.+|.||||=|-+
T Consensus 93 ~~k~ftFDk-VFGpes~Q~d~Y~~~v~p~i~eVl~GyNC----TIFAYGQTGTGKTyTMeG 148 (1041)
T KOG0243 93 IDKTFTFDK-VFGPESQQEDLYDQAVSPIIKEVLEGYNC----TIFAYGQTGTGKTYTMEG 148 (1041)
T ss_pred CCCEEECCE-EECCCHHHHHHHHHHHHHHHHHHHCCCCC----EEEEECCCCCCCEEEEEC
T ss_conf 110000112-22752658999999988999998624772----599864788885246236
No 341
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=94.34 E-value=0.49 Score=27.36 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 89862788885799999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIAN 218 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~ 218 (502)
+=|.|++|.|||-|+.+|.-
T Consensus 289 ~~i~G~nGsGKSTLl~~l~G 308 (490)
T PRK10938 289 WQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99986788879999999808
No 342
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=94.34 E-value=0.05 Score=34.45 Aligned_cols=54 Identities=17% Similarity=0.303 Sum_probs=36.2
Q ss_pred CCCHHHHHHHC-CCCCHHHHHHH-HHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 76447887632-88614789999-999982410013655555489862788885799999
Q gi|254780627|r 158 LDSRFVFSTFI-EGSSNRVALTA-AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 (502)
Q Consensus 158 LNpryTFDnFV-VG~sN~lA~aA-AkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~a 215 (502)
-...|+||.-. ...+++..|.. ++.+.+.--.+|.. -+|-||.+|.||||-|.+
T Consensus 46 ~~k~F~FD~vf~~~~~Q~~vy~~~~~plv~~~l~G~n~----ti~aYGqTGSGKTyTm~G 101 (352)
T cd01364 46 STKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNC----TIFAYGQTGTGKTYTMEG 101 (352)
T ss_pred CCEEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCE----EEEEECCCCCCCEEEEEC
T ss_conf 87035478683999998999999989999999778855----999877889993499756
No 343
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.30 E-value=0.27 Score=29.27 Aligned_cols=131 Identities=15% Similarity=0.157 Sum_probs=75.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCC--------------------CEEEEEHHHHHHHHHHHH--HCCCHHHHH
Q ss_conf 5489862788885799999999998630688--------------------168646988899999998--619889999
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNL--------------------RVVYLTAEYFMWRFASAI--RDNCALNLK 254 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~--------------------~v~y~~~e~F~~~~~~a~--~~~~~~~fr 254 (502)
.-+.++|+.|+||+-+..+++..++=.+|.. -+.++..+.--.+ .+- ..-.++..|
T Consensus 22 HA~L~~Gp~G~Gk~~~A~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~--~g~~~~~I~idqiR 99 (325)
T PRK08699 22 NAWLFVGKKGTGKTAFARFAAKALLCETPAPGCKPCGECMSCHLFGQGSHPDFYEITPLADEPE--NGRKLLQIKIDAVR 99 (325)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCC--CCCCCCCCCHHHHH
T ss_conf 1797579999789999999999982899988899898888899986599999688513445300--16655667699999
Q ss_pred H---H-----HH-HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEEC
Q ss_conf 9---9-----74-0310205444453175069999999999885698799964875676136303457653021157751
Q gi|254780627|r 255 D---S-----LR-NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 (502)
Q Consensus 255 ~---~-----~r-~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~ 325 (502)
+ + ++ ..-|.+||+.+-+. ..+++-|+-|+.+= -.+--+|++++.+- .+-+-++||.. .+.+.
T Consensus 100 ~l~~~~~~~~~~~~~kV~ii~~ae~mn-~~aaNaLLK~LEEP-p~~~~fiL~t~~~~----~llpTI~SRc~---~~~~~ 170 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMN-VQAANSLLKVLEEP-PPQVVFLLVSHAAD----KVLPTIKSRCR---KMVLP 170 (325)
T ss_pred HHHHHHCCCCCCCCCEEEEECCHHHHC-HHHHHHHHHHHCCC-CCCEEEEEEECCHH----HCCCHHHHCCC---CCCCC
T ss_conf 999997108656894699985777758-99999999984178-88848999879846----46233986454---21089
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 5888999999999
Q gi|254780627|r 326 LHDYEMRFSILKN 338 (502)
Q Consensus 326 ~Pd~e~r~~Il~~ 338 (502)
+|+.+.-.+.|+.
T Consensus 171 ~p~~~~~~~~L~~ 183 (325)
T PRK08699 171 APSHEEALAYLRE 183 (325)
T ss_pred CCCHHHHHHHHHH
T ss_conf 9599999999997
No 344
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=94.29 E-value=0.13 Score=31.43 Aligned_cols=85 Identities=18% Similarity=0.190 Sum_probs=63.1
Q ss_pred CCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC-C-HHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 816864698889999999861988999999740310205444453175-0-69999999999885698799964875676
Q gi|254780627|r 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L-IQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 227 ~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk-~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
..|++.+-++++.. .....+|-.--+..+.++||||-.+... + ...-|-+.+|.||+++..++++++.+|.+
T Consensus 258 ~~v~~f~F~~LC~~------p~~~~DYl~ia~~f~~v~i~~VP~l~~~~~d~arRFI~LID~lYd~~~kL~~sa~~~~~~ 331 (361)
T pfam03969 258 GDLVWFSFADLCLA------PRHPSDYLALAERFSTVFLTDVPPMTRCSQDEARRFIALVDELYDRHVKLVASAEAALDD 331 (361)
T ss_pred CCEECCCHHHHHHC------CCCHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCHHH
T ss_conf 88500128888665------588899999998699999889988999870899999999999840799789987899999
Q ss_pred HCC---C---CHHHHHHHH
Q ss_conf 136---3---034576530
Q gi|254780627|r 305 LES---L---DPRIRSRLQ 317 (502)
Q Consensus 305 l~~---l---~~rL~SR~~ 317 (502)
|-. + =+|-+|||.
T Consensus 332 Ly~g~~~~f~f~Rt~SRL~ 350 (361)
T pfam03969 332 LYRGGRLAFEFQRTLSRLL 350 (361)
T ss_pred HCCCCCCHHHHHHHHHHHH
T ss_conf 6489842011049879999
No 345
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=94.28 E-value=0.029 Score=36.07 Aligned_cols=175 Identities=19% Similarity=0.254 Sum_probs=110.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH---------HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf 8986278888579999999999863068816864698889---------9999998619889999997403102054444
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM---------WRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~---------~~~~~a~~~~~~~~fr~~~r~~DvLliDDiq 269 (502)
|-+|||+|+|||=|-++||-.+-+.+ +=+|--.-. +-||=|+=.+=++..|+-=-.=.|.|||=|.
T Consensus 453 lClvGPPGVGKTSlg~SIA~ALnRkF-----vR~SlGG~~DeAEIrGHRRTYvGAMPGriiQ~lk~~~t~NPl~LlDEID 527 (941)
T TIGR00763 453 LCLVGPPGVGKTSLGKSIAKALNRKF-----VRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLILLDEID 527 (941)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEE-----EEEEECCCEEHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf 87207269542227899999968804-----9995267220311278643203467257899987604158806862022
Q ss_pred HHC--C----C-C-HHHHHH-----HHHHH-----HHHCCCEE-EEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHH
Q ss_conf 531--7----5-0-699999-----99999-----88569879-996487567613630345765302115775158889
Q gi|254780627|r 270 FLQ--G----K-L-IQHEFC-----HLLNS-----LLDSAKQV-VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 (502)
Q Consensus 270 fl~--g----k-~-tqee~f-----~~~n~-----l~~~gkqi-v~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e 330 (502)
=++ . - + +.-|++ ..|+. =+|--+=| -|-|- -+.+..++.=|..|++ +.+|.-=-.+
T Consensus 528 K~~~~~~~~GDPaSALLEvLDPEQN~~F~DHYldvp~DLS~V~CyFi~T--AN~~d~IP~PLLDRME---vI~lsGY~~~ 602 (941)
T TIGR00763 528 KIGLKSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVLCYFIAT--ANSIDTIPRPLLDRME---VIELSGYTEE 602 (941)
T ss_pred EECCCCCCCCCHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHHHEEEC--CCCCCCCCCCCCCCEE---EEECCCCCHH
T ss_conf 0016788655637888641286436042553002340042002100024--4757677722137402---4523888767
Q ss_pred HHHHHHHHHHHH-----HHHHCCCCCCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH
Q ss_conf 999999999988-----643116897898999999850278--88999999999999863
Q gi|254780627|r 331 MRFSILKNRLAI-----SQKEDPKLNINEEVLMHVARTVTT--SGRELDGAFNQLVFRHS 383 (502)
Q Consensus 331 ~r~~Il~~k~~~-----~~~~~~~~~l~~~v~~~la~~~~~--~vR~Legal~~l~~~~~ 383 (502)
-++.|.++-+-- +......+.++++++..|.+..+. -||.|+=-+.++.-.+.
T Consensus 603 EK~~IA~~yLiP~~~~~~GL~~~~l~~~d~al~~lI~~YtREaGVRNL~r~I~~i~RK~A 662 (941)
T TIGR00763 603 EKLEIAKKYLIPKALEDHGLKPDELKISDEALLLLIKYYTREAGVRNLERQIEKICRKAA 662 (941)
T ss_pred HHHHHHHHCCHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 899999854713679870888132212689999999875132021338999999999999
No 346
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.26 E-value=0.14 Score=31.28 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 89862788885799999999998
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASI 221 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~ 221 (502)
+-|.|+.|.|||-|+.+|...+.
T Consensus 33 ~~LiGpNGaGKSTLlk~I~Gl~~ 55 (251)
T PRK09544 33 LTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99998999889999999966888
No 347
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.26 E-value=0.51 Score=27.24 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=30.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH
Q ss_conf 898627888857999999999986306881686469888999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~ 240 (502)
..|-|.+|.|||.++..++..+..++ +.+|+|+|.|.=..+
T Consensus 33 ~viaarpg~GKT~f~~~~a~~~~~~~-g~~vl~~SlEm~~~~ 73 (271)
T cd01122 33 IILTAGTGVGKTTFLREYALDLITQH-GVRVGTISLEEPVVR 73 (271)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHH
T ss_conf 99996899869999999999999976-990899970499999
No 348
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.24 E-value=0.034 Score=35.63 Aligned_cols=103 Identities=17% Similarity=0.254 Sum_probs=55.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH------CCCCCEEEEEHHHHH-----HH-HHHH----HHCC---CHHHHHHHHH
Q ss_conf 48986278888579999999999863------068816864698889-----99-9999----8619---8899999974
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKR------QPNLRVVYLTAEYFM-----WR-FASA----IRDN---CALNLKDSLR 258 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~------~~~~~v~y~~~e~F~-----~~-~~~a----~~~~---~~~~fr~~~r 258 (502)
-+.|.|++|.|||-|+++|+-..... ....++.|+.-+.++ .+ .... +..+ .+.--|.-++
T Consensus 29 ~v~i~G~sGsGKSTLl~~l~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tl~e~l~~p~~~~LSGGqkQRvalARal~~ 108 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLLLH 108 (166)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99999589998899999986987699867997699879998564665887599996361546789999999999999964
Q ss_pred HCCHHHHHHHHHHCC--CCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHC
Q ss_conf 031020544445317--506999999999988569879996487567613
Q gi|254780627|r 259 NIDLLLIDDMQFLQG--KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 (502)
Q Consensus 259 ~~DvLliDDiqfl~g--k~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~ 306 (502)
+.++|++|+- .++ ..+++.++.. |.+.++.+|+.+-+ |.-+.
T Consensus 109 ~p~iliLDEp--Ts~LD~~~~~~l~~~---l~~~~~Tvi~VtH~-~~~~~ 152 (166)
T cd03223 109 KPKFVFLDEA--TSALDEESEDRLYQL---LKELGITVISVGHR-PSLWK 152 (166)
T ss_pred CCCEEEECCC--CCCCCHHHHHHHHHH---HHHCCCEEEEEECC-HHHHH
T ss_conf 9999997585--332899999999999---99779989999434-69997
No 349
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=94.24 E-value=0.038 Score=35.28 Aligned_cols=48 Identities=23% Similarity=0.370 Sum_probs=38.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH
Q ss_conf 4898627888857999999999986306881686469888999999986
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~ 246 (502)
=+.|+|.+|.|||-+|+-+-+.++++. +.-|+|=.+=.|+..|-++-+
T Consensus 210 h~L~~GTtG~GKs~~lr~LL~~iR~rG-d~AIiYDkgC~f~~~fyd~~~ 257 (613)
T TIGR02759 210 HILIHGTTGSGKSVALRKLLRWIRQRG-DRAIIYDKGCTFVSRFYDPSQ 257 (613)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCC
T ss_conf 526645417438999999999998639-858998257420213268888
No 350
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=94.23 E-value=0.086 Score=32.78 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=27.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf 8986278888579999999999863068816864698
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e 235 (502)
.-|.|++|+|||.|+..+.+.+.+.+....|+..-.|
T Consensus 72 ~~I~~~~g~GKt~ll~~ii~~~~~~~~~v~V~~~IGe 108 (274)
T cd01133 72 IGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGE 108 (274)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 7875799998236899999999850898799998425
No 351
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=94.22 E-value=0.52 Score=27.19 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=7.9
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 278888579999999999
Q gi|254780627|r 203 ASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 203 G~~GlGKTHLl~ai~~~~ 220 (502)
||+|.|||.|+.++-..+
T Consensus 76 GPpGtGKsTLirSlVrr~ 93 (1077)
T COG5192 76 GPPGTGKSTLIRSLVRRF 93 (1077)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 699887468999999998
No 352
>PRK05636 replicative DNA helicase; Provisional
Probab=94.19 E-value=0.53 Score=27.15 Aligned_cols=100 Identities=16% Similarity=0.253 Sum_probs=56.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE----EHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf 8986278888579999999999863068816864----698889999999861988999999740310205444453175
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL----TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~----~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk 274 (502)
..|-|-+|+|||.|...|+..+..++ +..|+|. ++++.+..++++.-.=+...++ .|+
T Consensus 270 iIiAARPsmGKTalAlnia~n~A~~~-g~~v~~fSLEMs~~ql~~Rlla~~s~V~~~~ir-----------------~g~ 331 (507)
T PRK05636 270 IIVAARPGVGKSTIALDFMRSASIKN-NKASVIFSLEMSKSEIVMRLLSAEAEVRLADMR-----------------GGK 331 (507)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHH-----------------CCC
T ss_conf 99973787866899999999999876-993799715699899999999984798878885-----------------588
Q ss_pred CHHHH---HHHHHHHHHHCCCEEEEECCC---CHHHHCCCCHHHHHHHHCC
Q ss_conf 06999---999999988569879996487---5676136303457653021
Q gi|254780627|r 275 LIQHE---FCHLLNSLLDSAKQVVAAADR---PPSELESLDPRIRSRLQGG 319 (502)
Q Consensus 275 ~tqee---~f~~~n~l~~~gkqiv~tsd~---~P~~l~~l~~rL~SR~~~G 319 (502)
-++++ +....+.+.+.. ++..|. .+.+|..--.|++.+..-+
T Consensus 332 l~~~~~~~l~~a~~~l~~~p---l~IdD~~~lti~~Ira~aRrlk~~~~l~ 379 (507)
T PRK05636 332 MDEDAWEKLVQRLGKIAQAP---IFIDDSANLTMMEIRSKARRLKQKHDLK 379 (507)
T ss_pred CCHHHHHHHHHHHHHHHHCC---EEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 78899999999999986198---8998499976999999999998617999
No 353
>KOG1051 consensus
Probab=94.17 E-value=0.3 Score=28.88 Aligned_cols=132 Identities=17% Similarity=0.226 Sum_probs=73.7
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCE---EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH
Q ss_conf 7632886147899999999824100136555554---8986278888579999999999863068816864698889999
Q gi|254780627|r 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP---LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 (502)
Q Consensus 165 DnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NP---Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~ 241 (502)
..=|+|..-.. -|.|.+|......... . +| +++.||.|+|||-|..|.+-.+....+ ..+.+..-+|+.
T Consensus 561 ~~~V~gQ~eAv-~aIa~AI~~sr~gl~~--~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~--~~IriDmse~~e-- 632 (898)
T KOG1051 561 HERVIGQDEAV-AAIAAAIRRSRAGLKD--P-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEE--NFIRLDMSEFQE-- 632 (898)
T ss_pred HHHCCCHHHHH-HHHHHHHHHCCCCCCC--C-CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCC--CEEEECHHHHHH--
T ss_conf 75446637789-9999999843203578--8-88858999788841389999999999728864--268961455555--
Q ss_pred HHHH-HC------C-CHHHHHHHH--HHCCHHHHHHHHHHCCCCHHHHHHHHHHHHH---HCCC-------EEEEECCCC
Q ss_conf 9998-61------9-889999997--4031020544445317506999999999988---5698-------799964875
Q gi|254780627|r 242 ASAI-RD------N-CALNLKDSL--RNIDLLLIDDMQFLQGKLIQHEFCHLLNSLL---DSAK-------QVVAAADRP 301 (502)
Q Consensus 242 ~~a~-~~------~-~~~~fr~~~--r~~DvLliDDiqfl~gk~tqee~f~~~n~l~---~~gk-------qiv~tsd~~ 301 (502)
++.+ .. . ....+.+.. |-.-|+|+|||.- +.-..+.-|...++.-. .+|+ -+|+||...
T Consensus 633 vskligsp~gyvG~e~gg~LteavrrrP~sVvLfdeIEk-Ah~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~ 711 (898)
T KOG1051 633 VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEK-AHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVG 711 (898)
T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECHHH-CCHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEEECCCC
T ss_conf 653048995554630577888997169965999830222-2888999999998627400588867504645999942631
Q ss_pred HHHH
Q ss_conf 6761
Q gi|254780627|r 302 PSEL 305 (502)
Q Consensus 302 P~~l 305 (502)
-..+
T Consensus 712 ~~~i 715 (898)
T KOG1051 712 SSAI 715 (898)
T ss_pred HHHH
T ss_conf 6666
No 354
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.17 E-value=0.18 Score=30.48 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=22.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 898627888857999999999986306881686469
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~ 234 (502)
+-|.|++|.|||-|+..+...+. |..--+++..
T Consensus 43 vaIvG~sGsGKSTL~~ll~gl~~---p~~G~I~idg 75 (226)
T cd03248 43 TALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDG 75 (226)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC---CCCCEEEECC
T ss_conf 99999999849999999964546---7887899999
No 355
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.16 E-value=0.11 Score=32.12 Aligned_cols=36 Identities=33% Similarity=0.412 Sum_probs=25.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH
Q ss_conf 898627888857999999999986306881686469888
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F 237 (502)
+-|+|++|+|||-||.-|++.. ..+..|+..-.|.-
T Consensus 161 igIfagsGvGKs~Ll~~i~r~~---~adv~VialIGeRg 196 (441)
T PRK08927 161 LGIFAGSGVGKSVLLSMLARNT---DADVSVIGLIGERG 196 (441)
T ss_pred EEECCCCCCCHHHHHHHHHHHC---CCCCEEEEECCCCH
T ss_conf 6631689998789999998641---67737875226518
No 356
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=94.16 E-value=0.54 Score=27.10 Aligned_cols=78 Identities=10% Similarity=0.144 Sum_probs=46.2
Q ss_pred CCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCC-H-HHHHHH--HHHHHHHCCCEEEEECCCCH
Q ss_conf 8168646988899999998619889999997403102054444531750-6-999999--99998856987999648756
Q gi|254780627|r 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I-QHEFCH--LLNSLLDSAKQVVAAADRPP 302 (502)
Q Consensus 227 ~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~-t-qee~f~--~~n~l~~~gkqiv~tsd~~P 302 (502)
..|+..|.|.|.--+-.+. -+.....+..+++++.++||-+|.+.|+. . +-..+. ..-.....+.++|+.|..+|
T Consensus 114 p~ILlTtPd~l~~~l~~~~-~~~~~~~~~~~~~l~~VViDEiH~y~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~ 192 (357)
T TIGR03158 114 PIILLTNPDIFVYLTRFAY-IDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPD 192 (357)
T ss_pred CEEEEECHHHHHHHHHHHC-CCCCHHHHHHHHCCCEEEEEEEHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 9099928899999976201-365103999985167477562000067620899999999999863368980899827998
Q ss_pred HHH
Q ss_conf 761
Q gi|254780627|r 303 SEL 305 (502)
Q Consensus 303 ~~l 305 (502)
..+
T Consensus 193 ~~~ 195 (357)
T TIGR03158 193 PAL 195 (357)
T ss_pred HHH
T ss_conf 035
No 357
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.11 E-value=0.55 Score=27.03 Aligned_cols=131 Identities=17% Similarity=0.201 Sum_probs=75.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH----------------------HCCCCCEEEEEHHHHHHH--------------
Q ss_conf 54898627888857999999999986----------------------306881686469888999--------------
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIK----------------------RQPNLRVVYLTAEYFMWR-------------- 240 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~----------------------~~~~~~v~y~~~e~F~~~-------------- 240 (502)
+-+.++|+.|+||.-|..+.+..++= .||+.. ++..|.....
T Consensus 22 HA~Lf~Gp~G~Gk~~lA~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~~~HPD~~--~i~Pe~~~~~~~~~~~~~~~~~~~ 99 (342)
T PRK06964 22 HALLLHGQAGIGKLAFAQHLAQGLLCETPQPNGEPCGTCAACTWFAQGNHPDYR--IVRPEALAAEAPGAADDAKAADAD 99 (342)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEE--EECCCHHCCCCCCCCCHHHHHHHH
T ss_conf 057657999867999999999998389999888978677778888627999745--534002102233321001011122
Q ss_pred -HHHHHH----CCCHHHHHH---HH--H----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHC
Q ss_conf -999986----198899999---97--4----031020544445317506999999999988569879996487567613
Q gi|254780627|r 241 -FASAIR----DNCALNLKD---SL--R----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 (502)
Q Consensus 241 -~~~a~~----~~~~~~fr~---~~--r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~ 306 (502)
--...+ .=.+++.|+ +. + ..-|.+||+.+.+ +..+++-|+-|+.+=- .+-.+|++++.+-
T Consensus 100 ~~~~~~~~~~~~I~idqiR~l~~~l~~~~~~g~~kVviI~~Ae~m-n~~aaNalLK~LEEPp-~~~~~iL~~~~~~---- 173 (342)
T PRK06964 100 EGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPAEAL-NVAAANALLKTLEEPP-PGVVFLLVSARID---- 173 (342)
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHH-CHHHHHHHHHHHCCCC-CCEEEEEEECCHH----
T ss_conf 210123565564549999999999700754588449998277873-8999999999723798-7848999869925----
Q ss_pred CCCHHHHHHHHCCEEEEECCCCHHHHHHHHHH
Q ss_conf 63034576530211577515888999999999
Q gi|254780627|r 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 (502)
Q Consensus 307 ~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~ 338 (502)
.+-+-++||.. .+.+.+|+.+.-.+.|+.
T Consensus 174 ~llpTI~SRcq---~~~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 174 RLLPTILSRCR---QWPMTVPAPEAAAAWLAA 202 (342)
T ss_pred HCCHHHHHCCE---EECCCCCCHHHHHHHHHH
T ss_conf 48368876764---302899599999999987
No 358
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.09 E-value=0.32 Score=28.68 Aligned_cols=101 Identities=17% Similarity=0.357 Sum_probs=59.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH-------HHHHHCCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 8986278888579999999999863068816864698889999-------999861988999999740310205444453
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF-------ASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~-------~~a~~~~~~~~fr~~~r~~DvLliDDiqfl 271 (502)
+.|.|-+|.|||.+...+..++.++ +.+++++..+.+-..+ -..+|.......++....-+++++||.-.+
T Consensus 2 ivl~GlP~SGKSt~a~~L~~~l~~~--~~~~i~~~~d~~~~~~~~~~~~~Ek~~r~~~~~~v~~~l~~~~~vI~D~~nYi 79 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELSKKLSEK--NIDNIILGTDLIRESFPVWKEKYEEFIRDSTLYLIKTALKNKYSVIVDDTNYY 79 (249)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH--CCCEEEECCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH
T ss_conf 7896789998999999999999982--99659965520021200033677999899999999998433766997273278
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 1750699999999998856987999648756761
Q gi|254780627|r 272 QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 (502)
Q Consensus 272 ~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l 305 (502)
.|- .-|||+.-.+. .-.+.++-++.|+...
T Consensus 80 Kg~--RYEL~clAk~~--~t~~c~I~~~~p~e~c 109 (249)
T TIGR03574 80 NSK--RRDLINIAKEY--NKNYIIIYLKAPLDTL 109 (249)
T ss_pred HHH--HHHHHHHHHHC--CCCEEEEEECCCHHHH
T ss_conf 899--99999999984--9986999973999999
No 359
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.09 E-value=0.077 Score=33.10 Aligned_cols=125 Identities=19% Similarity=0.181 Sum_probs=60.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH-----------------------HHH----HHHHHHHHC----
Q ss_conf 8986278888579999999999863068816864698-----------------------889----999999861----
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE-----------------------YFM----WRFASAIRD---- 247 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e-----------------------~F~----~~~~~a~~~---- 247 (502)
+-|-|++|.|||-|++.|.-.. .-.|..--+++..+ .|. .+++..+..
T Consensus 29 ~~iiGpnGaGKSTLl~~i~G~~-~~~~~~G~I~~~g~~i~~~~~~~~~~~gi~~~~q~~~~~~~~~~~~~l~~~~~~LSG 107 (200)
T cd03217 29 HALMGPNGSGKSTLAKTIMGHP-KYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVNEGFSG 107 (200)
T ss_pred EEEECCCCCCHHHHHHHHCCCC-CCCCCCCEEEECCEECCCCCHHHHHHCCEEEECCCHHHCCCCCHHHHHHHHCCCCCH
T ss_conf 9999689999999999970777-778520079999999886999999976948963676870798499999764636799
Q ss_pred C---CHHHHHHHHHHCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCC-CHHHHHHHHCCEE
Q ss_conf 9---88999999740310205444453175--0699999999998856987999648756761363-0345765302115
Q gi|254780627|r 248 N---CALNLKDSLRNIDLLLIDDMQFLQGK--LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL-DPRIRSRLQGGVS 321 (502)
Q Consensus 248 ~---~~~~fr~~~r~~DvLliDDiqfl~gk--~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l-~~rL~SR~~~Gl~ 321 (502)
+ .+.--|.-.++.++|++|- =.+|= .+++++..++..+.+.|+.||+++- .+..+..+ .||. --+..|=+
T Consensus 108 Gekqrv~iaral~~~P~lllLDE--PtsgLD~~~~~~i~~~i~~l~~~g~tiiiitH-~~~~~~~~~~Drv-~vl~~Gki 183 (200)
T cd03217 108 GEKKRNEILQLLLLEPDLAILDE--PDSGLDIDALRLVAEVINKLREEGKSVLIITH-YQRLLDYIKPDRV-HVLYDGRI 183 (200)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE-CHHHHHHHCCCEE-EEEECCEE
T ss_conf 99999999999960999999969--62269999999999999999857999999996-3687766469999-99879999
Q ss_pred EEECCCC
Q ss_conf 7751588
Q gi|254780627|r 322 VPLGLHD 328 (502)
Q Consensus 322 ~~i~~Pd 328 (502)
+...+|+
T Consensus 184 v~~G~~e 190 (200)
T cd03217 184 VKSGDKE 190 (200)
T ss_pred EEEECHH
T ss_conf 9997999
No 360
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.08 E-value=0.53 Score=27.15 Aligned_cols=206 Identities=16% Similarity=0.175 Sum_probs=84.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHH----HHHC-----CHHHHHHHH
Q ss_conf 8986278888579999999999863068816864698889999999861988999999----7403-----102054444
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS----LRNI-----DLLLIDDMQ 269 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~----~r~~-----DvLliDDiq 269 (502)
+=|-|++|.|||-|++.+..-.... +-+ +++..++.. ..+..++|++ |++. ..-+.|+|-
T Consensus 36 ~aiiG~sGsGKSTL~~~l~Gl~~~~--~G~-I~~~G~~i~--------~~~~~~~r~~ig~VfQ~p~~~l~~~tV~e~i~ 104 (277)
T PRK13642 36 VSIIGQNGSGKSTTARLIDGLFEEF--EGI-VKIDGERLT--------AENVWNLRRKIGMVFQNPDNQFVGATVEDDVA 104 (277)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCC--CCE-EEECCEECC--------CCCHHHHHCCCEEEEECCCCCCCCCCHHHHHH
T ss_conf 9999999968999999996389988--848-999999998--------57888885176899989763257550888898
Q ss_pred HH-CCCC-HHHHHHHHHHH-HHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEE-----EECCC----CHHHHHHHHH
Q ss_conf 53-1750-69999999999-885698799964875676136303457653021157-----75158----8899999999
Q gi|254780627|r 270 FL-QGKL-IQHEFCHLLNS-LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV-----PLGLH----DYEMRFSILK 337 (502)
Q Consensus 270 fl-~gk~-tqee~f~~~n~-l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~-----~i~~P----d~e~r~~Il~ 337 (502)
|- .+.. ..+|.....+. |..-|= .=-.+++|.+|+|=+.+-+ =+...|+. =.+.| |..+|..|++
T Consensus 105 ~g~~~~~~~~~e~~~~v~~~l~~~~l--~~~~~~~P~~LSGGqrQRv-aIA~aLa~~P~ililDEPTs~LD~~~~~~i~~ 181 (277)
T PRK13642 105 FGMENQGIPREEMIKRVDEALLAVNM--LDFKTREPARLSGGQKQRV-AVAGIIALRPEIIILDESTSMLDPTGRSEIMR 181 (277)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCC--HHHHHCCHHHCCHHHHHHH-HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 77766699999999999999987799--6565579122899999999-99999966999999958876589899999999
Q ss_pred HHHHHHHHHCCCC---CCCHHH--HHHHHHHCC----------CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 9998864311689---789899--999985027----------8889999999999998630246877889999987630
Q gi|254780627|r 338 NRLAISQKEDPKL---NINEEV--LMHVARTVT----------TSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVN 402 (502)
Q Consensus 338 ~k~~~~~~~~~~~---~l~~~v--~~~la~~~~----------~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~ 402 (502)
---. ..++.++ .++.+. +.. |.++- ++.+++-.--..| ..+.+..+....+++++-+.-+.
T Consensus 182 ll~~--L~~~~~~Tii~iTHdl~~~~~-aDrv~vm~~G~Iv~~G~~~evf~~p~~l-~~~~l~~P~~~~l~~~L~~~g~~ 257 (277)
T PRK13642 182 VIHE--IKDKYHLTVLSITHDLDEAAS-SDRILVMRAGEIIKEAAPSELFATSEDM-VEIGLDVPFSSNLMKDLRTNGFD 257 (277)
T ss_pred HHHH--HHHHCCCEEEEEEECHHHHHH-CCEEEEEECCEEEEECCHHHHHCCHHHH-HHCCCCCCHHHHHHHHHHHCCCC
T ss_conf 9999--998169899999458899971-9989999899999976899987696779-87799998799999999975998
Q ss_pred CCCCCCCCHHHHHHHHHHHHC
Q ss_conf 378875798999999999809
Q gi|254780627|r 403 TGETKKMRIEDIQRMVAKHYN 423 (502)
Q Consensus 403 ~~~~~~i~~~~I~~~V~~~~~ 423 (502)
-....+|.|..++.+|+..|
T Consensus 258 -~~~~~~t~~e~~~~l~~~lg 277 (277)
T PRK13642 258 -LPEKYLSEDELVELLADKLG 277 (277)
T ss_pred -CCCCCCCHHHHHHHHHHHCC
T ss_conf -99887599999999998609
No 361
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.07 E-value=0.13 Score=31.38 Aligned_cols=33 Identities=33% Similarity=0.416 Sum_probs=22.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 898627888857999999999986306881686469
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~ 234 (502)
.-|.|++|.|||-|++.+..-.. |..--+++..
T Consensus 33 v~ivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g 65 (220)
T cd03245 33 VAIIGRVGSGKSTLLKLLAGLYK---PTSGSVLLDG 65 (220)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC---CCCCEEEECC
T ss_conf 99999999859999999967254---7865899999
No 362
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.06 E-value=0.15 Score=31.09 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8986278888579999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~ 220 (502)
.-|-|+||.|||-|++.+..-.
T Consensus 364 vaiVG~SGsGKSTL~~LL~gly 385 (585)
T PRK13657 364 VAIVGPTGAGKSTLINLLHRVF 385 (585)
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998898986999999986015
No 363
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.00 E-value=0.1 Score=32.28 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 898627888857999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANA 219 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~ 219 (502)
+-|.|+.|.|||-|+.+|..-
T Consensus 30 ~~liGpNGaGKSTLlk~l~Gl 50 (271)
T PRK13638 30 TGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998099999999668
No 364
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=93.98 E-value=0.047 Score=34.63 Aligned_cols=143 Identities=18% Similarity=0.341 Sum_probs=70.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCE---EEEEHHHHHHHHHHHHHCCCHHHHHHHH----H---HCCHHHHHHHH
Q ss_conf 986278888579999999999863068816---8646988899999998619889999997----4---03102054444
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQPNLRV---VYLTAEYFMWRFASAIRDNCALNLKDSL----R---NIDLLLIDDMQ 269 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v---~y~~~e~F~~~~~~a~~~~~~~~fr~~~----r---~~DvLliDDiq 269 (502)
=|=||||.|||-||.++ |.+....|+.|+ ++...++-.+. .-+..++|++. + ---.=+.|.|=
T Consensus 31 AlIGPSGCGKSTlLR~l-NRMnDl~~~~r~~G~v~f~G~dIy~~------~~D~~~LR~~vGMVFQ~PNPFpmSIydNia 103 (248)
T TIGR00972 31 ALIGPSGCGKSTLLRSL-NRMNDLVPGVRIEGKVLFDGQDIYDK------KIDVVELRKRVGMVFQKPNPFPMSIYDNIA 103 (248)
T ss_pred EEECCCCCCHHHHHHHH-HHHHHHCCCEEEEEEEEECCCCCCCC------CCCHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 98778898678999998-87764078816888898645114565------668788762258521478978840556754
Q ss_pred H---HCCCCHHHHHHHHHH-HHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHC-CEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 5---317506999999999-988569879996487567613630345765302-11577515888999999999998864
Q gi|254780627|r 270 F---LQGKLIQHEFCHLLN-SLLDSAKQVVAAADRPPSELESLDPRIRSRLQG-GVSVPLGLHDYEMRFSILKNRLAISQ 344 (502)
Q Consensus 270 f---l~gk~tqee~f~~~n-~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~-Gl~~~i~~Pd~e~r~~Il~~k~~~~~ 344 (502)
| +.|-+...+|=.+.. +|..+ .|=|..+.||.- |+... =.-.=|+-|.+- .
T Consensus 104 yG~r~~G~~~K~~L~e~Ve~sL~~A----------------ALWDEVKD~L~~sa~~LS---GGQQQRLCIARa-----l 159 (248)
T TIGR00972 104 YGPRLHGIKDKKELDEIVEESLKKA----------------ALWDEVKDRLHDSALGLS---GGQQQRLCIARA-----L 159 (248)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHC----------------CCHHHHHHHHCCCCCCCC---CHHHHHHHHHHH-----H
T ss_conf 5245216337789999999998616----------------871355242135889787---268899999987-----5
Q ss_pred HHCCCCCCCHH---HHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 31168978989---999998502788899999999999
Q gi|254780627|r 345 KEDPKLNINEE---VLMHVARTVTTSGRELDGAFNQLV 379 (502)
Q Consensus 345 ~~~~~~~l~~~---v~~~la~~~~~~vR~Legal~~l~ 379 (502)
|-++.+-|=|| +||=||. ..+|-.+..|.
T Consensus 160 A~ePeVlLlDEPTSALDPIaT------~~IEeLi~eLk 191 (248)
T TIGR00972 160 AVEPEVLLLDEPTSALDPIAT------GKIEELIQELK 191 (248)
T ss_pred HCCCCEECCCCCCCCCCHHHH------HHHHHHHHHHH
T ss_conf 248852105788875787789------99999999876
No 365
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.96 E-value=0.062 Score=33.78 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 89862788885799999999998
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASI 221 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~ 221 (502)
+-|-|++|.|||-|++++.-...
T Consensus 29 ~~liG~nGaGKSTll~~l~G~~~ 51 (182)
T cd03215 29 VGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred EEEECCCCCCCCHHHHHHCCCCC
T ss_conf 99988899992637787669867
No 366
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=93.96 E-value=0.58 Score=26.85 Aligned_cols=211 Identities=17% Similarity=0.130 Sum_probs=115.9
Q ss_pred HHHHHHHHHHCC-CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEE-EEEHHHHH--HHHHHHHHCCCHH
Q ss_conf 999999998241-0013655555489862788885799999999998630688168-64698889--9999998619889
Q gi|254780627|r 176 ALTAAQSIAEVD-SHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV-YLTAEYFM--WRFASAIRDNCAL 251 (502)
Q Consensus 176 A~aAAkaVAe~p-g~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~-y~~~e~F~--~~~~~a~~~~~~~ 251 (502)
|..|..-.|-+| |-+. +.|-|..|.+|+.++.+++.-+-...|-.++- -+|-+.++ -++-.+++.+...
T Consensus 11 a~lAl~L~aidP~glGG-------vlirg~~Gtakst~~r~l~~llp~~~p~~~lPl~~tedrl~G~lDi~~tL~~G~~v 83 (584)
T PRK13406 11 AATAAALFAVDPAGLGG-------VVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPV 83 (584)
T ss_pred HHHHHHHHCCCCCCCCC-------EEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHCCCCCHHHHHHCCCEE
T ss_conf 99999984848666551-------89977999579999999997568999846569999741514712599999768985
Q ss_pred HHHHH-HH--HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC---------------CEEEEECCCCHHHHCCCCHHHH
Q ss_conf 99999-74--031020544445317506999999999988569---------------8799964875676136303457
Q gi|254780627|r 252 NLKDS-LR--NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSA---------------KQVVAAADRPPSELESLDPRIR 313 (502)
Q Consensus 252 ~fr~~-~r--~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~g---------------kqiv~tsd~~P~~l~~l~~rL~ 313 (502)
|..- +- +--+|.+|.+..+. +.+...+-...+.| +-+++..|..+.+=..+.+-|.
T Consensus 84 -~~~GLLa~A~~gvLyvdevnll~-----d~lv~~Ll~a~~~G~~~vEReGiS~~~parf~LIa~deg~e~de~~~~~l~ 157 (584)
T PRK13406 84 -AERGLLAEADGGVLVLAMAERLE-----PGTAARLAAALDAGEVAIERDGLALRMPARFGLVALDEGAEEDERAPAALA 157 (584)
T ss_pred -CCCCHHHCCCCCEEEEECHHHCC-----HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHH
T ss_conf -25753330369989985147378-----889999999985487400258766356650589994678876431107888
Q ss_pred HHHHCCEEEEECCCC--HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHC-C
Q ss_conf 653021157751588--8999999999998864311689789899999985027----88899999999999986302-4
Q gi|254780627|r 314 SRLQGGVSVPLGLHD--YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT----TSGRELDGAFNQLVFRHSFA-P 386 (502)
Q Consensus 314 SR~~~Gl~~~i~~Pd--~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~----~~vR~Legal~~l~~~~~~~-~ 386 (502)
-|| |+.++++.-. ......+...++......-..+.++++.+++|++-.. .+.|--..++.--.+++.+. +
T Consensus 158 dRl--a~~vd~~~~~~~~~~~~~~~~~~i~~Ar~~L~~V~i~d~~~~~l~~~a~~~gv~g~Ra~i~~~raArA~AAl~Gr 235 (584)
T PRK13406 158 DRL--AFHLDLDGLALRDTREFPIDADDIAAARARLAAVRVPPEAIEALCAAAAALGIASLRAPLLALRAARAAAALAGR 235 (584)
T ss_pred HHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 765--070681676666401111236899999986786666999999999999983998620999999999999997499
Q ss_pred -CCCHHHHHHHHHHHH
Q ss_conf -687788999998763
Q gi|254780627|r 387 -ILTAEIADELLSHLV 401 (502)
Q Consensus 387 -~~~~~~~~~~l~~~~ 401 (502)
.++.+.++.+..-.+
T Consensus 236 ~~V~~~Dl~~Aa~LvL 251 (584)
T PRK13406 236 TAVEEADIALAARLVL 251 (584)
T ss_pred CCCCHHHHHHHHHHHC
T ss_conf 9788999999999831
No 367
>PTZ00035 Rad51; Provisional
Probab=93.96 E-value=0.34 Score=28.56 Aligned_cols=85 Identities=13% Similarity=0.117 Sum_probs=50.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHH----HHCCCCCEEEEEHHH-HHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf 9862788885799999999998----630688168646988-89999999861988999999740310205444453175
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASI----KRQPNLRVVYLTAEY-FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~----~~~~~~~v~y~~~e~-F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk 274 (502)
=|||..|.|||.|.|-.+-.+. .-..+.+++|+.+|. |.-+=+..|-. +|.--.-=.+|.|.+...-
T Consensus 134 Ei~Ge~gsGKTQlChqLaV~~QLP~~~GG~~GkvvYIDTEgtFrpeRi~qIA~--------~~gld~~~vL~nI~~ara~ 205 (350)
T PTZ00035 134 ELFGEFRTGKSQLCHTLAITCQLPIEQSGGEGKCLWIDTEGTFRPERIVAIAK--------RYGLHPTDCLNNIAYAKAY 205 (350)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCHHHHHHHHH--------HCCCCHHHHHHHEEEEEEC
T ss_conf 89727989789999999999048577779886279996889987899999998--------7099979985332232206
Q ss_pred --CHHHHHHHHHHHHHHCCC
Q ss_conf --069999999999885698
Q gi|254780627|r 275 --LIQHEFCHLLNSLLDSAK 292 (502)
Q Consensus 275 --~tqee~f~~~n~l~~~gk 292 (502)
.-|.++......+...++
T Consensus 206 n~ehq~~ll~~~~~~~~e~~ 225 (350)
T PTZ00035 206 NCDHQTELLIDASAMMADAR 225 (350)
T ss_pred CHHHHHHHHHHHHHHHHCCC
T ss_conf 87889999999999851167
No 368
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.96 E-value=0.14 Score=31.36 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 898627888857999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANA 219 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~ 219 (502)
.-|-|+||.|||-|++.+...
T Consensus 379 vaIVG~SGsGKSTl~~LL~g~ 399 (588)
T PRK11174 379 VALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899986499999999872
No 369
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=93.95 E-value=0.5 Score=27.34 Aligned_cols=28 Identities=32% Similarity=0.290 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCH
Q ss_conf 89999999982410013655555489862788885
Q gi|254780627|r 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 (502)
Q Consensus 175 lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGK 209 (502)
-|+.|-+..-|.|.. |-+||.--+-..|
T Consensus 133 ~A~NALLKtLEEPP~-------~~vFIL~Ttep~k 160 (557)
T PRK07270 133 GAFNALLKTLEEPTE-------NVVFILATTELHK 160 (557)
T ss_pred HHHHHHHHHHHCCCC-------CEEEEEEECCHHH
T ss_conf 999989998528998-------7699998499475
No 370
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=93.94 E-value=0.12 Score=31.67 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8986278888579999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~ 220 (502)
+-|.|++|.|||-|+..+...+
T Consensus 31 vaivG~sGsGKSTll~ll~gl~ 52 (237)
T cd03252 31 VGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999985999999996776
No 371
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.90 E-value=0.6 Score=26.76 Aligned_cols=55 Identities=25% Similarity=0.290 Sum_probs=36.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE----HHHHHHHHHHHHHCCCHHHHH
Q ss_conf 89862788885799999999998630688168646----988899999998619889999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT----AEYFMWRFASAIRDNCALNLK 254 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~----~e~F~~~~~~a~~~~~~~~fr 254 (502)
..|-|.+|+|||.|+..|+..+..+. +..|+|.| .++.+..++++.-.=+...++
T Consensus 197 iIiaARPsmGKTafalnia~n~A~~~-g~~Vl~fSLEMs~eql~~R~la~~s~i~~~~i~ 255 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALRE-GKPVLFFSLEMSAEQLGERLLASKSGINTGNIR 255 (421)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99985467874599999999999866-983899925799999999999985489776665
No 372
>PRK02362 ski2-like helicase; Provisional
Probab=93.89 E-value=0.37 Score=28.30 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCC---------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf 9999999851568789998847984---------379999999999998616999999999998742
Q gi|254780627|r 444 VAMYLSKIMTPRSFPEIGRRFGDRD---------HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 (502)
Q Consensus 444 iamyL~r~~t~~s~~~IG~~fg~rd---------HsTV~~a~~ki~~~~~~d~~~~~~i~~i~~~i~ 501 (502)
.|+-|..=....+..+|...||--- -++.+|+..++-+.+.. .....+..+...|.
T Consensus 580 ~al~L~d~i~E~~~~~I~~ky~v~~G~l~~l~~~a~~~~~~~~~~~~~l~~--~~~~~l~~l~~Rl~ 644 (736)
T PRK02362 580 TALLLEDWIDEVSEDRICERYGVGPGDIRGKVETAEWLMHAAERLAGELDL--KCTREARELEKRVH 644 (736)
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_conf 999999986079899999987989289999999999999999999998666--89999999999998
No 373
>KOG3347 consensus
Probab=93.87 E-value=0.27 Score=29.29 Aligned_cols=80 Identities=16% Similarity=0.323 Sum_probs=47.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCC-HHHHHHHHHHCCHHHHHHHHHHCCCCHH
Q ss_conf 898627888857999999999986306881686469888999999986198-8999999740310205444453175069
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC-ALNLKDSLRNIDLLLIDDMQFLQGKLIQ 277 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~-~~~fr~~~r~~DvLliDDiqfl~gk~tq 277 (502)
+.|.|-+|.|||-|-..++- . ....|+.--++. +.++ .+.|-+.| +..++|+
T Consensus 10 ILvtGTPG~GKstl~~~lae-~------~~~~~i~isd~v-------kEn~l~~gyDE~y---~c~i~DE---------- 62 (176)
T KOG3347 10 ILVTGTPGTGKSTLAERLAE-K------TGLEYIEISDLV-------KENNLYEGYDEEY---KCHILDE---------- 62 (176)
T ss_pred EEEECCCCCCCHHHHHHHHH-H------HCCCEEEHHHHH-------HHHCCHHCCCCCC---CCCCCCH----------
T ss_conf 79867999880259999999-7------398567455677-------6611021023223---6754567----------
Q ss_pred HHHHHHHHHHHHCCCEEE--EECCCCHHHH
Q ss_conf 999999999885698799--9648756761
Q gi|254780627|r 278 HEFCHLLNSLLDSAKQVV--AAADRPPSEL 305 (502)
Q Consensus 278 ee~f~~~n~l~~~gkqiv--~tsd~~P~~l 305 (502)
+-+.--++-+...|.-|| -+||--|...
T Consensus 63 dkv~D~Le~~m~~Gg~IVDyHgCd~Fperw 92 (176)
T KOG3347 63 DKVLDELEPLMIEGGNIVDYHGCDFFPERW 92 (176)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCHHH
T ss_conf 899988889875688488600567650113
No 374
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=93.86 E-value=0.053 Score=34.24 Aligned_cols=30 Identities=40% Similarity=0.483 Sum_probs=26.5
Q ss_pred CEE-EEECCCCCCHHHHHHHHHHHHHHH-CCC
Q ss_conf 548-986278888579999999999863-068
Q gi|254780627|r 197 NPL-FIHASVGLGKTHLLQAIANASIKR-QPN 226 (502)
Q Consensus 197 NPL-fi~G~~GlGKTHLl~ai~~~~~~~-~~~ 226 (502)
||+ .|+|++|-|||-||-||+..++.+ -|.
T Consensus 30 l~~f~i~G~tGAGKtsLldAI~yALYGkP~~~ 61 (1063)
T TIGR00618 30 LKLFVICGKTGAGKTSLLDAITYALYGKPVPR 61 (1063)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 57367778899835459999999872888775
No 375
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=93.82 E-value=0.19 Score=30.36 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=30.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf 8986278888579999999999863068816864698
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e 235 (502)
++|+|+++.|||-|..=++|+..++ +.++.|+.|+
T Consensus 76 vmvvG~vDSGKSTLt~~LaN~~l~r--G~~v~iiDaD 110 (398)
T COG1341 76 VMVVGPVDSGKSTLTTYLANKLLAR--GRKVAIIDAD 110 (398)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEECC
T ss_conf 9998986767889999999887644--7418999689
No 376
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=93.78 E-value=0.11 Score=31.97 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=34.7
Q ss_pred CCHHHHHHHCC-CCCHHHHHHHH-HHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 64478876328-86147899999-99982410013655555489862788885799999
Q gi|254780627|r 159 DSRFVFSTFIE-GSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 (502)
Q Consensus 159 NpryTFDnFVV-G~sN~lA~aAA-kaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~a 215 (502)
...|+||.-.- ..+++--|... +.+.+.--.+|. -.+|-||.+|.||||-|.+
T Consensus 54 ~~~f~FD~vf~~~~tQ~~vy~~~~~plv~~~l~G~n----~ti~aYGqTGSGKTyTm~G 108 (345)
T cd01368 54 ETKFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKN----SLLFTYGVTNSGKTYTMQG 108 (345)
T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEEECCCCCCCCCCCCC
T ss_conf 606577856399999899999987889999848872----4799954788987524267
No 377
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.78 E-value=0.07 Score=33.41 Aligned_cols=23 Identities=43% Similarity=0.496 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 89862788885799999999998
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASI 221 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~ 221 (502)
+-|-|+.|.|||-|+..|..-+.
T Consensus 30 ~~l~G~NGaGKSTLlkli~Gl~~ 52 (200)
T PRK13540 30 LHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99988999879999999977858
No 378
>KOG0652 consensus
Probab=93.73 E-value=0.18 Score=30.55 Aligned_cols=145 Identities=23% Similarity=0.356 Sum_probs=72.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCC---HHHHH-HHHHHCCHHHHHHHHHHC--
Q ss_conf 898627888857999999999986306881686469888999999986198---89999-997403102054444531--
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC---ALNLK-DSLRNIDLLLIDDMQFLQ-- 272 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~---~~~fr-~~~r~~DvLliDDiqfl~-- 272 (502)
.+.|||+|.|||-|..|.+..... ..+-+-+-+.+.-|+ ..+. -+.|. .|-+.--+..||.+.-+.
T Consensus 208 vLmYGPPGTGKTlmARAcAaqT~a-----TFLKLAgPQLVQMfI---GdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtK 279 (424)
T KOG0652 208 VLMYGPPGTGKTLMARACAAQTNA-----TFLKLAGPQLVQMFI---GDGAKLVRDAFALAKEKAPTIIFIDELDAIGTK 279 (424)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC-----HHHHHCCHHHHHHHH---CCHHHHHHHHHHHHHCCCCEEEEEECHHHHCCC
T ss_conf 276579997577999999874010-----688732647776653---341889999998753349838997300232334
Q ss_pred -------CC-CHHH---HHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHH-H-HHHCCEEEEECCCCHHHHHHHHHHH
Q ss_conf -------75-0699---99999999885698799964875676136303457-6-5302115775158889999999999
Q gi|254780627|r 273 -------GK-LIQH---EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR-S-RLQGGVSVPLGLHDYEMRFSILKNR 339 (502)
Q Consensus 273 -------gk-~tqe---e~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~-S-R~~~Gl~~~i~~Pd~e~r~~Il~~k 339 (502)
|. ..|. ||++-++-+-....--|+++... ..-|++-|. | |+-. -.+..-|.-+.|..|+|--
T Consensus 280 RfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNR---vDiLDPALlRSGRLDR--KIEfP~Pne~aRarIlQIH 354 (424)
T KOG0652 280 RFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNR---VDILDPALLRSGRLDR--KIEFPHPNEEARARILQIH 354 (424)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC---CCCCCHHHHHCCCCCC--CCCCCCCCHHHHHHHHHHH
T ss_conf 3653123438999999999986048997562678852164---3434888864466444--4348899778988999886
Q ss_pred HHHHHHHCCCCCCCHHH-HHHHHHH
Q ss_conf 98864311689789899-9999850
Q gi|254780627|r 340 LAISQKEDPKLNINEEV-LMHVART 363 (502)
Q Consensus 340 ~~~~~~~~~~~~l~~~v-~~~la~~ 363 (502)
.+.+...++| .+-||..
T Consensus 355 -------sRKMnv~~DvNfeELaRs 372 (424)
T KOG0652 355 -------SRKMNVSDDVNFEELARS 372 (424)
T ss_pred -------HHCCCCCCCCCHHHHHHC
T ss_conf -------400577888798998533
No 379
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=93.72 E-value=0.065 Score=33.60 Aligned_cols=52 Identities=19% Similarity=0.396 Sum_probs=34.0
Q ss_pred CHHHHHHHC-CCCCHHHHHHHH-HHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 447887632-886147899999-99982410013655555489862788885799999
Q gi|254780627|r 160 SRFVFSTFI-EGSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 (502)
Q Consensus 160 pryTFDnFV-VG~sN~lA~aAA-kaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~a 215 (502)
..|+||... ...+++--|... .-+.+.--.+|.. -+|-||.+|.||||-|.+
T Consensus 46 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~----ti~aYGqTGSGKTyTm~G 99 (335)
T smart00129 46 KKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYNA----TIFAYGQTGSGKTYTMSG 99 (335)
T ss_pred EEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCE----EEEEECCCCCCCCCEECC
T ss_conf 065678687989998999999889999999789757----999979999997647568
No 380
>KOG0242 consensus
Probab=93.67 E-value=0.017 Score=37.80 Aligned_cols=54 Identities=15% Similarity=0.271 Sum_probs=41.9
Q ss_pred CCHHHHHHHCC-CCCHHHHHHH-HHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 64478876328-8614789999-9999824100136555554898627888857999999
Q gi|254780627|r 159 DSRFVFSTFIE-GSSNRVALTA-AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 (502)
Q Consensus 159 NpryTFDnFVV-G~sN~lA~aA-AkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai 216 (502)
...|+||.+.- +.+|+=.|.. ++-|+..-..++.+ -+|-||.+|.||||=|+++
T Consensus 52 ~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~----TVFAYG~TgSGKTyTM~G~ 107 (675)
T KOG0242 52 PEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEGFNA----TVFAYGQTGSGKTYTMSGS 107 (675)
T ss_pred CCCEEEEEECCCCCCHHHHHHHCCHHHHHHHHCCCCC----CEEEECCCCCCCCEEEECC
T ss_conf 6412520044899887889874007889997468665----2564237889875477515
No 381
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.60 E-value=0.13 Score=31.58 Aligned_cols=87 Identities=17% Similarity=0.267 Sum_probs=51.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE------HHHHHHHHHH-----HHHCCCHHHHHHHHH----HCCHH
Q ss_conf 89862788885799999999998630688168646------9888999999-----986198899999974----03102
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT------AEYFMWRFAS-----AIRDNCALNLKDSLR----NIDLL 263 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~------~e~F~~~~~~-----a~~~~~~~~fr~~~r----~~DvL 263 (502)
+-++|++|+|||+|.+.+|..+.......++..+. -|+|..-|-- .++.|-.-+|-++-+ .--+|
T Consensus 197 vIL~G~pGtGKT~lAk~lA~~l~g~~~~~rv~~VqfhpsysYEDfi~Gyrp~~~gf~~~~G~f~~~~~~A~~~p~~~y~~ 276 (459)
T PRK11331 197 IILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVF 276 (459)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCEEE
T ss_conf 79658999887899999999970788778468998358866178764605688861326836999999998498987699
Q ss_pred HHHHHHHHCCC-CHHHHHHHHHHH
Q ss_conf 05444453175-069999999999
Q gi|254780627|r 264 LIDDMQFLQGK-LIQHEFCHLLNS 286 (502)
Q Consensus 264 liDDiqfl~gk-~tqee~f~~~n~ 286 (502)
+||.|-. ++- +.=-|++.++.+
T Consensus 277 iideinr-~~~~~~fgel~~liE~ 299 (459)
T PRK11331 277 IIDEINR-ANLSKVFGEVMMLMEH 299 (459)
T ss_pred EEEHHHC-CCHHHHHHHHHHHHHH
T ss_conf 9843203-3889999999999641
No 382
>PRK04040 adenylate kinase; Provisional
Probab=93.59 E-value=0.68 Score=26.40 Aligned_cols=122 Identities=20% Similarity=0.261 Sum_probs=72.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHH
Q ss_conf 48986278888579999999999863068816864698889999999861988999999740310205444453175069
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQ 277 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~tq 277 (502)
-.+|-|-+|+|||-++.-+.-.+. + ...+++.-+++-+.... .+ .-+=|+..|..++=--..+ |
T Consensus 4 ~VvvtGiPGvGKTTv~~~~~~~l~---~--~~~~vn~G~~M~e~A~~--~g-lv~~RDemRkL~~~~q~~l--------Q 67 (189)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLK---E--DYKIVNFGDVMLEVAKE--EG-LVEHRDEMRKLPLEEQKEL--------Q 67 (189)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC---C--CCEEEEHHHHHHHHHHH--CC-CCCCHHHHCCCCHHHHHHH--------H
T ss_conf 899975898878999999999723---5--87598677999999998--17-7347788747999999999--------9
Q ss_pred HHHHHHHHHHHHCCCEEEEE---CCCCHH-HHCCCCHHHHHHHHCCEEEEECC-CCHHHHHHHHHHHHH
Q ss_conf 99999999988569879996---487567-61363034576530211577515-888999999999998
Q gi|254780627|r 278 HEFCHLLNSLLDSAKQVVAA---ADRPPS-ELESLDPRIRSRLQGGVSVPLGL-HDYEMRFSILKNRLA 341 (502)
Q Consensus 278 ee~f~~~n~l~~~gkqiv~t---sd~~P~-~l~~l~~rL~SR~~~Gl~~~i~~-Pd~e~r~~Il~~k~~ 341 (502)
.+...-+-.+-..+ -|++- +-+.|. -++||+......+.--..+-|+. |+ .|+.++..
T Consensus 68 ~~Aa~~I~~~~~~~-~ViIDTHa~Iktp~GylpGLP~~Vl~~L~P~~ivlieA~P~-----eIl~RR~~ 130 (189)
T PRK04040 68 REAAERIAEMAGEG-PVIVDTHATIKTPGGYLPGLPEWVLEELNPDVIVLIEADPD-----EILMRRLR 130 (189)
T ss_pred HHHHHHHHHHCCCC-CEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCHH-----HHHHHHHC
T ss_conf 99999999835787-28994452002688677899899998669988999975889-----99998842
No 383
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=93.57 E-value=0.68 Score=26.38 Aligned_cols=78 Identities=13% Similarity=0.195 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 79899999999999986697889743024057885399898983898999999998999999999986277665078972
Q gi|254780627|r 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR 112 (502)
Q Consensus 33 ~d~~~iW~~il~~Lk~~l~~~~F~tWi~pL~~i~~e~~~L~L~vPn~FikdwIe~~Y~~~I~~al~~~~g~~~~I~i~i~ 112 (502)
......|+.+...+... ...+..|+....+ .++++.+.|.+++.+..+++.+++.+.+.+.+.+.......+.+.+.
T Consensus 92 ~~i~~y~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~ 168 (1436)
T PRK00448 92 ELILDYWQLIIEKAKKN--SPLFKSLLSKQKP-EVEGNKLIIKASNEFERDHLKKKKLKKLEKQYEKFGFPKLKIDFEVD 168 (1436)
T ss_pred HHHHHHHHHHHHHHHHC--CHHHHHHHHHCCE-EEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 99999999999987531--6899999864757-98789999996888999999997689999999973887458999954
Q ss_pred C
Q ss_conf 1
Q gi|254780627|r 113 S 113 (502)
Q Consensus 113 ~ 113 (502)
.
T Consensus 169 ~ 169 (1436)
T PRK00448 169 E 169 (1436)
T ss_pred C
T ss_conf 3
No 384
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=93.54 E-value=0.56 Score=26.99 Aligned_cols=102 Identities=17% Similarity=0.302 Sum_probs=63.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH-H--HHHHHCCCHHHHH-------HHHHHCCHHHHHHHH
Q ss_conf 98627888857999999999986306881686469888999-9--9998619889999-------997403102054444
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR-F--ASAIRDNCALNLK-------DSLRNIDLLLIDDMQ 269 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~-~--~~a~~~~~~~~fr-------~~~r~~DvLliDDiq 269 (502)
-+-|--|.|||.+|.|. .+.++.. +.+|+=..-..=..+ + -+.|+..++..|- ..+..-|||+||---
T Consensus 401 ~VvG~AGaGKStmL~aA-ReawEa~-GyrV~GaALsGkAAegLe~~sGI~SrTlAs~e~~w~~gr~~L~~~dVlVIDEAG 478 (1102)
T PRK13826 401 AVIGRAGAGKTTMMKAA-REAWEAA-GYRVVGGALAGKAAEGLEKEAGIASRTLSSWELRWNQGRDQLDNKTVFVLDEAG 478 (1102)
T ss_pred EEEECCCCCHHHHHHHH-HHHHHHC-CCEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCC
T ss_conf 99842888788999999-9999977-977980150078999775346953033899998743586556787389984555
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCC
Q ss_conf 5317506999999999988569879996487567613630
Q gi|254780627|r 270 FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 (502)
Q Consensus 270 fl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~ 309 (502)
... ...+-.++..-...|-++|+.+| |.+|.-++
T Consensus 479 MVg----srqmarvl~~ae~aGAKvVLVGD--~~QLQpIe 512 (1102)
T PRK13826 479 MVS----SRQMALFVEAVTRAGAKLVLVGD--PEQLQPIE 512 (1102)
T ss_pred CCC----HHHHHHHHHHHHHCCCEEEEECC--HHHHCCCC
T ss_conf 655----79999999999975998999688--78827610
No 385
>KOG0952 consensus
Probab=93.51 E-value=0.41 Score=27.94 Aligned_cols=107 Identities=18% Similarity=0.249 Sum_probs=65.0
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHH-------HCCCCCEEEEEHHH-HHHHHHHHHH-------------CCCHHHHHHH
Q ss_conf 89862788885799-9999999986-------30688168646988-8999999986-------------1988999999
Q gi|254780627|r 199 LFIHASVGLGKTHL-LQAIANASIK-------RQPNLRVVYLTAEY-FMWRFASAIR-------------DNCALNLKDS 256 (502)
Q Consensus 199 Lfi~G~~GlGKTHL-l~ai~~~~~~-------~~~~~~v~y~~~e~-F~~~~~~a~~-------------~~~~~~fr~~ 256 (502)
..|+.|+|.|||-| +-+|-+.+.+ ...+.||+|+..-. ...|++.-.. .++++--+..
T Consensus 129 MLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te 208 (1230)
T KOG0952 129 MLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE 208 (1230)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHH
T ss_conf 79977789971678999999999850145543468713999925688999999998664242462588841754566778
Q ss_pred ---------------------------HHHCCHHHHHHHHHHCCCC--HHHHHHHHHHHH---HHCCCEEEEECCCCHHH
Q ss_conf ---------------------------7403102054444531750--699999999998---85698799964875676
Q gi|254780627|r 257 ---------------------------LRNIDLLLIDDMQFLQGKL--IQHEFCHLLNSL---LDSAKQVVAAADRPPSE 304 (502)
Q Consensus 257 ---------------------------~r~~DvLliDDiqfl~gk~--tqee~f~~~n~l---~~~gkqiv~tsd~~P~~ 304 (502)
+-.+-+||||.||.|..++ .-|-+..-.+.+ -+++=+||=-|-.-|+-
T Consensus 209 i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~ 288 (1230)
T KOG0952 209 IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNY 288 (1230)
T ss_pred HHHCCEEEECCCCEEEEEEEECCCHHHHHHEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCH
T ss_conf 77437797063400046654126265555420488530012157664069999999999988542005788862457877
Q ss_pred H
Q ss_conf 1
Q gi|254780627|r 305 L 305 (502)
Q Consensus 305 l 305 (502)
+
T Consensus 289 e 289 (1230)
T KOG0952 289 E 289 (1230)
T ss_pred H
T ss_conf 9
No 386
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.49 E-value=0.12 Score=31.80 Aligned_cols=117 Identities=19% Similarity=0.225 Sum_probs=58.4
Q ss_pred CHHHHHHHCC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
Q ss_conf 4478876328-861478999999998241001365555548986278888579999999999863068816864698889
Q gi|254780627|r 160 SRFVFSTFIE-GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 (502)
Q Consensus 160 pryTFDnFVV-G~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~ 238 (502)
..+|.++||. |.-++-+ |+.+..|-.-. .| ..|.||+|.|||-||+|+..++-.. .+|+.+--.
T Consensus 145 ~~ltl~dli~~gt~~~~~-a~~L~~av~~r-------~N-ILisGGTGSGKTTlLNal~~~i~~~---eRvItiEDt--- 209 (355)
T COG4962 145 IKLTLLDLIIFGTMIRRA-AKFLRRAVGIR-------CN-ILISGGTGSGKTTLLNALSGFIDSD---ERVITIEDT--- 209 (355)
T ss_pred CCCCHHHHHHCCCCCHHH-HHHHHHHHHHC-------EE-EEEECCCCCCHHHHHHHHHHCCCCC---CEEEEEEEH---
T ss_conf 525599998738958899-99999998620-------15-9996787887999999997157976---508998123---
Q ss_pred HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHC
Q ss_conf 999999861988999999740310205444453175--06999999999988569879996487567613
Q gi|254780627|r 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK--LIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 (502)
Q Consensus 239 ~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk--~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~ 306 (502)
.|+- +....+.....+ .-.+.|+ -|+..|. -|+|...--.||+---|-|..++
T Consensus 210 aELq--l~~ph~vrL~TR-----------~~n~Eg~gevtm~dLv--kn~LRmRPDRIiVGEVRG~Ea~d 264 (355)
T COG4962 210 AELQ--LAHPHVVRLETR-----------PPNVEGTGEVTMRDLV--KNALRMRPDRIIVGEVRGVEALD 264 (355)
T ss_pred HHHC--CCCCCEEEEEEC-----------CCCCCCCCEEEHHHHH--HHHHHCCCCCEEEEEECCCCHHH
T ss_conf 6644--699855788634-----------8877776558899999--98753286536888860705999
No 387
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=93.44 E-value=0.17 Score=30.70 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8986278888579999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~ 220 (502)
.-|-|+||.|||-|++-+..-.
T Consensus 371 vaiVG~SGsGKSTL~~LL~gly 392 (581)
T PRK11176 371 VALVGRSGSGKSTIANLLTRFY 392 (581)
T ss_pred EECCCCCCCCHHHHHHHHHHHC
T ss_conf 3122899986789999998536
No 388
>PHA00729 NTP-binding motif containing protein
Probab=93.42 E-value=0.3 Score=28.87 Aligned_cols=119 Identities=18% Similarity=0.244 Sum_probs=70.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC-----------CCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCH
Q ss_conf 555548986278888579999999999863068-----------816864698889999999861988999999740310
Q gi|254780627|r 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPN-----------LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 (502)
Q Consensus 194 ~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~-----------~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~Dv 262 (502)
..|+-..|+|+.|.|||--.--++..+..+.-+ .+-++.+..++...+.++... =.-+++
T Consensus 15 ~GF~S~iifGkQG~GKTTYAlKV~~~v~~~l~~~~~~~~aW~~~~n~~~F~l~~al~k~~~~~~~---------~~RiP~ 85 (228)
T PHA00729 15 NGFVSAIIFGKQGTGKTTYALKVARDVFWKLNNLLTKDDAWQYAYNSYFFELPDALEKIQDAIDN---------DYRIPL 85 (228)
T ss_pred CCCEEEEEECCCCCCCEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEECHHHHHHHHHHHHHC---------CCCCCE
T ss_conf 79469999836778842021999999999964886543369999876142589999999999853---------776777
Q ss_pred HHHHHHHHHCCC-C--H-H-HHHHHHHHHHHHCCCEEEEECCCCHHHHC-CCCHHHHHHHHCCEEEEECCCC
Q ss_conf 205444453175-0--6-9-99999999988569879996487567613-6303457653021157751588
Q gi|254780627|r 263 LLIDDMQFLQGK-L--I-Q-HEFCHLLNSLLDSAKQVVAAADRPPSELE-SLDPRIRSRLQGGVSVPLGLHD 328 (502)
Q Consensus 263 LliDDiqfl~gk-~--t-q-ee~f~~~n~l~~~gkqiv~tsd~~P~~l~-~l~~rL~SR~~~Gl~~~i~~Pd 328 (502)
+++||.----+| . . + ..|.-.+|-....---+|||+-. |.||. .|-+ .+-..+.|.+-.
T Consensus 86 ii~DDAgiwLskY~w~~~~m~~Fyk~ynliRt~vsa~IFTTP~-p~Di~~~lRe------K~w~~I~I~~~~ 150 (228)
T PHA00729 86 LIFDDAGIWLSKYVWYEDYMITFYKIYNLIRTRVSAVIFTTPS-PDDLAFYLRE------KGWYQIRVTMNG 150 (228)
T ss_pred EEEECCCHHHHHEEEHHHHHHHHHHHHHHHHHHHHHEEECCCC-HHHHHHHHHH------HCEEEEEEEECC
T ss_conf 9982452012410022877688999999999887615861798-7899999987------017999999747
No 389
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.36 E-value=0.37 Score=28.23 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 89862788885799999999998
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASI 221 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~ 221 (502)
+-|-|++|.|||-|+++|.--+.
T Consensus 29 ~~liG~nGaGKSTLl~~i~Gl~~ 51 (222)
T cd03224 29 VALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999859999999977988
No 390
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.33 E-value=0.19 Score=30.26 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=37.3
Q ss_pred HHHHHHHCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCC
Q ss_conf 9999740310205444453175--069999999999885698799964875676136303457653021157751588
Q gi|254780627|r 253 LKDSLRNIDLLLIDDMQFLQGK--LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 (502)
Q Consensus 253 fr~~~r~~DvLliDDiqfl~gk--~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd 328 (502)
.|.-+++.++||+|+- .++= .|...++.++..+ ..++.||+.+-+. ..+.. -||.. -+..|-+++...|+
T Consensus 150 ARaLl~~p~IllLDEp--Ts~LD~~te~~i~~~l~~~-~~~~TvI~itHrl-~~~~~-~DrIl-vld~G~Ive~Gt~e 221 (275)
T cd03289 150 ARSVLSKAKILLLDEP--SAHLDPITYQVIRKTLKQA-FADCTVILSEHRI-EAMLE-CQRFL-VIEENKVRQYDSIQ 221 (275)
T ss_pred HHHHHCCCCEEEEECC--CCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCH-HHHHH-CCEEE-EEECCEEEEECCHH
T ss_conf 9999519998999797--6689999999999999997-2999899994388-88986-99999-99899999978989
No 391
>pfam02456 Adeno_IVa2 Adenovirus IVa2 protein. IVa2 protein can interact with the adenoviral packaging signal and that this interaction involves DNA sequences that have previously been demonstrated to be required for packaging. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter.
Probab=93.31 E-value=0.063 Score=33.73 Aligned_cols=39 Identities=26% Similarity=0.523 Sum_probs=27.7
Q ss_pred CEE--EEECCCCCCHHHHHHHHH-HHHHHHCCCCCEEEEEHHH
Q ss_conf 548--986278888579999999-9998630688168646988
Q gi|254780627|r 197 NPL--FIHASVGLGKTHLLQAIA-NASIKRQPNLRVVYLTAEY 236 (502)
Q Consensus 197 NPL--fi~G~~GlGKTHLl~ai~-~~~~~~~~~~~v~y~~~e~ 236 (502)
.|+ .||||+|.||++||..+- ..+..--|+ .|+++|.+.
T Consensus 86 qP~I~vVYGPTG~GKSQLlRNlis~~lI~P~PE-TVfFItPq~ 127 (370)
T pfam02456 86 QPVIGVVYGPTGCGKSQLLRNLLSCQLIQPIPE-TVFFITPQK 127 (370)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCC-EEEEECCCC
T ss_conf 744999988998778999999873466779997-289976777
No 392
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=93.29 E-value=0.18 Score=30.47 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=9.1
Q ss_pred CCEEEEECCCCCCH
Q ss_conf 55489862788885
Q gi|254780627|r 196 LNPLFIHASVGLGK 209 (502)
Q Consensus 196 ~NPLfi~G~~GlGK 209 (502)
-|.+.++.+...|.
T Consensus 309 ~n~i~V~p~~~~~~ 322 (648)
T PRK10535 309 TNTIDIYPGKDFGD 322 (648)
T ss_pred CCEEEEEECCCCCC
T ss_conf 87799983676688
No 393
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.26 E-value=0.76 Score=26.04 Aligned_cols=135 Identities=18% Similarity=0.155 Sum_probs=69.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHC-------CCHHHHHHHHHHCCHHHHHHHH
Q ss_conf 548986278888579999999999863068816864698889999999861-------9889999997403102054444
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD-------NCALNLKDSLRNIDLLLIDDMQ 269 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~-------~~~~~fr~~~r~~DvLliDDiq 269 (502)
+-++|.||||.|||-|+.++ ++..+. .+.+.++- +. ..-+. =+-++|.+...+=+.++=-.++
T Consensus 3 ~LivvsgPSGaGK~Tli~~l----~~~~~~-~~~~s~s~--tT---Rp~e~~g~dy~fvs~eeF~~~i~~g~F~~~w~~~ 72 (184)
T PRK10078 3 KLIWLMGPSGSGKDSLLAAL----RQREQT-QLLVAHRY--IT---RPASAGSENHIALSEQEFFTRAGQNLFALSWHAN 72 (184)
T ss_pred EEEEEECCCCCCHHHHHHHH----HHCCCC-CEEEEEEE--CC---CCCCCCCCCCEECCHHHHHHHHHCCCEEEEEEEC
T ss_conf 09999899869999999999----844899-88999872--37---8999999682887999999999779829999866
Q ss_pred HHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 53175-06999999999988569879996487567613630345765302115775158889999999999988643116
Q gi|254780627|r 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 (502)
Q Consensus 270 fl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~ 348 (502)
... .|-.+ ++.....|+-||+-.++. ++.. +..++..-+++=+-||..+. |++++. .+
T Consensus 73 --g~~YG~~~~----v~~~l~~G~dVi~~g~~~-----~~~~-~~~~~~~~~~~~~i~ps~~~----L~~RL~-----~R 131 (184)
T PRK10078 73 --GLYYGVGIE----IDLWLHAGFDVVVNGSRA-----HLPQ-ARARYQSALLPVCLQVSPEI----LRQRLE-----NR 131 (184)
T ss_pred --CCCCCCCHH----HHHHHHCCCEEEEECHHH-----HHHH-HHHHCCCCEEEEEECCCHHH----HHHHHH-----HC
T ss_conf --956670789----999997499499951798-----9999-99867985899995799999----999999-----72
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 89789899999985
Q gi|254780627|r 349 KLNINEEVLMHVAR 362 (502)
Q Consensus 349 ~~~l~~~v~~~la~ 362 (502)
|-+=++++..-|+.
T Consensus 132 GtEs~e~I~~RL~~ 145 (184)
T PRK10078 132 GRENASEINARLAR 145 (184)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 99999999999996
No 394
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.24 E-value=0.24 Score=29.55 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8986278888579999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~ 220 (502)
+-|.|++|.|||-|+..+..-+
T Consensus 50 vaIvG~sGsGKSTL~~ll~gl~ 71 (257)
T cd03288 50 VGICGRTGSGKSSLSLAFFRMV 71 (257)
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999981999999996056
No 395
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=93.23 E-value=0.41 Score=27.94 Aligned_cols=68 Identities=22% Similarity=0.283 Sum_probs=44.5
Q ss_pred HHCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCC
Q ss_conf 40310205444453175--069999999999885698799964875676136303457653021157751588
Q gi|254780627|r 258 RNIDLLLIDDMQFLQGK--LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 (502)
Q Consensus 258 r~~DvLliDDiqfl~gk--~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd 328 (502)
.+.++|++|- =.+|= .+..+|..++..+...|+..|+.|-..+.++..+-+|+. -+..|-++--.+|+
T Consensus 153 ~~P~lliLDE--Pt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~-il~~G~~~~~g~~~ 222 (293)
T COG1131 153 HDPELLILDE--PTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVI-ILNDGKIIAEGTPE 222 (293)
T ss_pred CCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEE-EEECCEEEEEECHH
T ss_conf 6999999969--9778799999999999999996799599998388699998689999-99899899980899
No 396
>PRK06851 hypothetical protein; Provisional
Probab=93.22 E-value=0.1 Score=32.27 Aligned_cols=26 Identities=19% Similarity=0.488 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 89862788885799999999998630
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQ 224 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~ 224 (502)
..|-||+|+|||.||..||.++.++.
T Consensus 34 ~ilKGGpGtGKStlmK~ig~~~~~~G 59 (368)
T PRK06851 34 FILKGGPGTGKSTLMKKIGEEFLEKG 59 (368)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99968999778999999999999689
No 397
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.19 E-value=0.3 Score=28.88 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 89862788885799999999998
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASI 221 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~ 221 (502)
+-|-|++|.|||-|+..+..-+.
T Consensus 39 vaivG~nGsGKSTLlk~l~Gll~ 61 (273)
T PRK13632 39 VAILGHNGSGKSTISKILTGLLK 61 (273)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999869999999973877
No 398
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=93.18 E-value=0.087 Score=32.71 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=35.2
Q ss_pred CCHHHHHHHCC-CCCHHHHHHH-HHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 64478876328-8614789999-999982410013655555489862788885799999
Q gi|254780627|r 159 DSRFVFSTFIE-GSSNRVALTA-AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 (502)
Q Consensus 159 NpryTFDnFVV-G~sN~lA~aA-AkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~a 215 (502)
...|+||...- ..+++--|.. ++.+.+.--.+|.. -+|-||.+|.||||-|.+
T Consensus 50 ~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~l~G~n~----ti~aYGqTGSGKTyTm~G 104 (322)
T cd01367 50 KHTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVA----TCFAYGQTGSGKTYTMLG 104 (322)
T ss_pred CCEEECCEECCCCCCHHHHHHHHHHHHHHHHHCCCCE----EEEEECCCCCCCCEEECC
T ss_conf 8456577564999998999999989999998689874----899942688887268426
No 399
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=93.17 E-value=0.57 Score=26.91 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8986278888579999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~ 220 (502)
+-|.|.+|.|||-|+.++.-..
T Consensus 281 ~gi~G~nGsGKsTL~~~l~Gl~ 302 (501)
T PRK10762 281 LGVSGLMGAGRTELMKVLYGAL 302 (501)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9966788876889999981876
No 400
>COG4240 Predicted kinase [General function prediction only]
Probab=93.16 E-value=0.25 Score=29.45 Aligned_cols=87 Identities=22% Similarity=0.185 Sum_probs=54.5
Q ss_pred CEE--EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf 548--986278888579999999999863068816864698889999999861988999999740310205444453175
Q gi|254780627|r 197 NPL--FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 (502)
Q Consensus 197 NPL--fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk 274 (502)
||| +|.|+-|.|||.|--+|-+++..++- -++.|+|-++|.--..+-++-. . +++-||.-- -+.|.
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La--~-------q~npllq~R--GlpGT 116 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLA--R-------QVNPLLQTR--GLPGT 116 (300)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEEHHHHHCCHHHHHHHH--H-------HCCCHHCCC--CCCCC
T ss_conf 9639985268887653599999999997365-3068866455310438999998--7-------338043026--99987
Q ss_pred CHHHHHHHHHHHHHHCCCEEE
Q ss_conf 069999999999885698799
Q gi|254780627|r 275 LIQHEFCHLLNSLLDSAKQVV 295 (502)
Q Consensus 275 ~tqee~f~~~n~l~~~gkqiv 295 (502)
.--.-..+.+|++.+.|-.++
T Consensus 117 HD~tlglnVLnai~~g~~~V~ 137 (300)
T COG4240 117 HDPTLGLNVLNAIARGGPTVP 137 (300)
T ss_pred CCHHHHHHHHHHHHCCCCCCC
T ss_conf 761789999999965899866
No 401
>PRK05595 replicative DNA helicase; Provisional
Probab=93.15 E-value=0.79 Score=25.93 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=33.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE----HHHHHHHHHHHHHC
Q ss_conf 89862788885799999999998630688168646----98889999999861
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT----AEYFMWRFASAIRD 247 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~----~e~F~~~~~~a~~~ 247 (502)
..|-|.+|+|||.|.-.|+..+..+. +..|+|.| .++.+..++.+.-.
T Consensus 204 iiiaaRP~mGKTa~alnia~~~a~~~-g~~V~~fSlEMs~~ql~~R~ls~~s~ 255 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALRE-GKSVVIFSLEMSKEQLAYKLLCSEAN 255 (444)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 99985798980799999999999866-99379995889999999999996469
No 402
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=93.10 E-value=0.091 Score=32.58 Aligned_cols=53 Identities=19% Similarity=0.348 Sum_probs=33.0
Q ss_pred CHHHHHHHCCCCCHHHHHHHH-HHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 447887632886147899999-999824100136555554898627888857999999
Q gi|254780627|r 160 SRFVFSTFIEGSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 (502)
Q Consensus 160 pryTFDnFVVG~sN~lA~aAA-kaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai 216 (502)
..|+||.-.--.+++.-|... ..+.+.-=.+|.. -+|-||.+|.||||=|.+-
T Consensus 48 ~~F~Fd~Vf~~~tQ~evy~~~~~plv~~~l~G~n~----ti~aYGqTGSGKTyTm~G~ 101 (334)
T cd01375 48 FSFKFDGVFHNASQEEVYETVAKPVVDSALDGYNG----TIFAYGQTGAGKTFTMTGG 101 (334)
T ss_pred EEEECCEECCCCCHHHHHHHHHHHHHHHHHCCCCE----EEEECCCCCCCCEEEECCC
T ss_conf 47777867799998999999989999998588725----7997135689975881378
No 403
>KOG0240 consensus
Probab=93.00 E-value=0.11 Score=32.01 Aligned_cols=57 Identities=23% Similarity=0.338 Sum_probs=40.8
Q ss_pred CCCHHHHHHHCCCCCHHHH--HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7644788763288614789--999999982410013655555489862788885799999999
Q gi|254780627|r 158 LDSRFVFSTFIEGSSNRVA--LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 (502)
Q Consensus 158 LNpryTFDnFVVG~sN~lA--~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~ 218 (502)
-+..|.||.-.--.+-|.. -.+|+.|.+.-=.+|.. ..|-||.+|.||||-|+++++
T Consensus 47 ~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNG----TvfaYGqT~sGKTytm~G~~~ 105 (607)
T KOG0240 47 ETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNG----TVFAYGQTGSGKTYTMEGIGH 105 (607)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCE----EEEEECCCCCCCCEEECCCCC
T ss_conf 66640000305997119999999889999998656651----589965788885123025678
No 404
>PRK05541 adenylylsulfate kinase; Provisional
Probab=92.99 E-value=0.8 Score=25.88 Aligned_cols=105 Identities=19% Similarity=0.189 Sum_probs=57.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHH-
Q ss_conf 8986278888579999999999863068816864698889999999861988999999740310205444453175069-
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQ- 277 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~tq- 277 (502)
+.+.|-||.|||-|-+++...+.++ +..+..+.++++-.-+ .+. .|-.. ++...
T Consensus 10 iW~TGLsGSGKTTiA~~l~~~L~~~--g~~~~~LDGD~lR~~~-----~~~--gfs~~----------------~R~~n~ 64 (176)
T PRK05541 10 IWITGLAGSGKTTIAKALYERLKLK--YSNVIYLDGDELREIF-----GHS--GYDKE----------------SRIEMA 64 (176)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEECCHHHHHHH-----CCC--CCCHH----------------HHHHHH
T ss_conf 9978999998999999999999975--9977998868999873-----658--98999----------------999999
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHH
Q ss_conf 9999999998856987999648756761363034576530211577515888999
Q gi|254780627|r 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 (502)
Q Consensus 278 ee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r 332 (502)
.-..++-..|.++|--+|++.-.|-.+.... -+..+..-.-+=+..| +|+.
T Consensus 65 ~r~~~lak~l~~~g~~vIvs~isp~~~~R~~---~R~~~~~~~EVyv~~p-le~~ 115 (176)
T PRK05541 65 LKRAKLAAFLADQGMIVIVTTISMFNEIYAY---NRKHLPNYFEVYLKCD-MEEL 115 (176)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHH---HHHHCCCCEEEEEECC-HHHH
T ss_conf 9999999998646980367522798999999---9974887689999489-9999
No 405
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=92.98 E-value=0.14 Score=31.33 Aligned_cols=46 Identities=24% Similarity=0.481 Sum_probs=39.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH
Q ss_conf 89862788885799999999998630688168646988899999998
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~ 245 (502)
+.|+|.+|.|||-+++.+-..++++. ++-|+|=.+-+|+..|...-
T Consensus 188 ~li~GTtGtGKS~~ir~LL~qIR~RG-drAIIyD~~G~Fv~~FY~p~ 233 (732)
T PRK13700 188 FCLHGTVGAGKSEVIRRLANYARQRG-DMVVIYDRSGEFVKSYYDPS 233 (732)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEECCCCCCHHHHCCCC
T ss_conf 67746888889999999999999729-95899939985339763988
No 406
>PRK01172 ski2-like helicase; Provisional
Probab=92.97 E-value=0.68 Score=26.39 Aligned_cols=12 Identities=17% Similarity=0.144 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780627|r 36 ESIFTIVSSRLK 47 (502)
Q Consensus 36 ~~iW~~il~~Lk 47 (502)
-..|+.++..++
T Consensus 153 G~~lE~~l~kl~ 164 (674)
T PRK01172 153 GPTLETVLSSAR 164 (674)
T ss_pred HHHHHHHHHHHH
T ss_conf 499999999998
No 407
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=92.97 E-value=0.28 Score=29.10 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 48986278888579999999999
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~ 220 (502)
-.-|-|++|.|||-|++.+..-.
T Consensus 369 ~vaIVG~SGsGKSTL~~LL~rly 391 (593)
T PRK10790 369 FVALVGHTGSGKSTLASLLMGYY 391 (593)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 89987999886899999999855
No 408
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=92.95 E-value=0.083 Score=32.88 Aligned_cols=224 Identities=22% Similarity=0.271 Sum_probs=117.5
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC----
Q ss_conf 5434455764478876328861478999999998241001365555548986278888579999999999863068----
Q gi|254780627|r 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN---- 226 (502)
Q Consensus 151 ~~~~~s~LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~---- 226 (502)
.....+-|-|+ +|+. |||..-.. .|-.+ .-+.+|+.. ..+|||+|+|||---.=. -|=.++.+.
T Consensus 142 ~~s~~slLRP~-~f~E-iVGQerAI--~aLla---K~aSPfPQH----iiLYGPPGVGKTTaARl~-LEe~K~~~~tPF~ 209 (616)
T TIGR02903 142 AKSIQSLLRPR-AFSE-IVGQERAI--KALLA---KLASPFPQH----IILYGPPGVGKTTAARLA-LEEAKKLKNTPFA 209 (616)
T ss_pred HHHHHHHCCCC-CCCC-CCCHHHHH--HHHHH---HHCCCCCCC----EEEECCCCCCHHHHHHHH-HHHCCCCCCCCCC
T ss_conf 99999862876-6764-33346899--99997---631888660----785573388478999998-7621368744761
Q ss_pred --CCEEEEEHHH-------HHHHHHHHHHC----CCHHHHHH--------HHH---HCCHHHHHHHHH----HCCC--CH
Q ss_conf --8168646988-------89999999861----98899999--------974---031020544445----3175--06
Q gi|254780627|r 227 --LRVVYLTAEY-------FMWRFASAIRD----NCALNLKD--------SLR---NIDLLLIDDMQF----LQGK--LI 276 (502)
Q Consensus 227 --~~v~y~~~e~-------F~~~~~~a~~~----~~~~~fr~--------~~r---~~DvLliDDiqf----l~gk--~t 276 (502)
+..+=+..-. -||=+.=+++. |.-.++-+ =+- -=-||-||-|=. |++| +.
T Consensus 210 ~DA~FvEVDGtTLRWDPREvTNPLLGSVHDPIYQGa~RDLAE~GvPEPk~GLVT~AHGGvLFIDEIGELD~lLQnKLLKV 289 (616)
T TIGR02903 210 EDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKLGLVTDAHGGVLFIDEIGELDPLLQNKLLKV 289 (616)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf 13785751576266774101477677625765567640110478798989871004775676502112227876324443
Q ss_pred HH----HH------------HHHHHHHHHCCCE----EEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHH
Q ss_conf 99----99------------9999998856987----9996487567613630345765302115775158889999999
Q gi|254780627|r 277 QH----EF------------CHLLNSLLDSAKQ----VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 (502)
Q Consensus 277 qe----e~------------f~~~n~l~~~gkq----iv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il 336 (502)
.| +| =.=+..|.+.|-. +|=+.-|.|.|+. +-|+||+.==.= +|-.-+.-..|+
T Consensus 290 LEDKrV~F~SsYYDpdD~NvPkYIK~lFe~GAPADFvLIGATTr~P~eIN---pALRSRCaEvfF---ePL~p~dI~~Iv 363 (616)
T TIGR02903 290 LEDKRVEFSSSYYDPDDENVPKYIKKLFEEGAPADFVLIGATTRDPEEIN---PALRSRCAEVFF---EPLTPEDIKEIV 363 (616)
T ss_pred HCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHCC---HHHHCCCCEEEC---CCCCHHHHHHHH
T ss_conf 22643665321248753786558888522688825687266158824405---123301431321---798878999999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC----------CCCHHHHHHHHH
Q ss_conf 99998864311689789899999985027888999999999999863024----------687788999998
Q gi|254780627|r 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP----------ILTAEIADELLS 398 (502)
Q Consensus 337 ~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~----------~~~~~~~~~~l~ 398 (502)
.+ + |+.-++.|.++|-+.||. .+=.-|.=.+.|--..+++.+.. .|+.+.+.+++.
T Consensus 364 ~~-A----A~klnv~L~~gV~e~Ia~-YTieGRkAvnILAD~Yg~~ly~~~~~~~~~d~~~I~~~dv~evv~ 429 (616)
T TIGR02903 364 LN-A----AEKLNVKLAEGVEELIAR-YTIEGRKAVNILADVYGYALYKKAEALKEEDKVTITADDVKEVVQ 429 (616)
T ss_pred HH-H----HHHCCCCCCCCHHHHHHH-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHH
T ss_conf 99-8----886177000364878721-471311222346546767653045556777742661867776775
No 409
>PRK00254 ski2-like helicase; Provisional
Probab=92.94 E-value=0.52 Score=27.23 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=31.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCC---------CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 999999985156878999884798---------437999999999999861699999999999874
Q gi|254780627|r 444 VAMYLSKIMTPRSFPEIGRRFGDR---------DHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 (502)
Q Consensus 444 iamyL~r~~t~~s~~~IG~~fg~r---------dHsTV~~a~~ki~~~~~~d~~~~~~i~~i~~~i 500 (502)
.|+-|--=....+..+|-..||-- ..++.++++..+-+.+.....+...+..+...|
T Consensus 570 ~aliL~d~i~E~~~~~I~~ky~v~~G~lq~l~~~a~~~a~~~~~~~~~l~~~~~~~~~l~~l~~Rl 635 (717)
T PRK00254 570 TALVLLAWINEVPEGEIVEKYNVEPGDIYRIVETAEWLVYSLKEIAKVLEASQDVVDYLETLRLRV 635 (717)
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999985599999999987969789999999999999999999998385188999999999999
No 410
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.92 E-value=0.24 Score=29.60 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 89862788885799999999998
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASI 221 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~ 221 (502)
+-|-|++|.|||-||..++..+.
T Consensus 28 v~liGpNGaGKSTLlk~l~Gll~ 50 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99997999769999999977878
No 411
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=92.92 E-value=0.12 Score=31.66 Aligned_cols=53 Identities=19% Similarity=0.360 Sum_probs=34.9
Q ss_pred CCHHHHHHHCC-CCCHHHHHHHH-HHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 64478876328-86147899999-99982410013655555489862788885799999
Q gi|254780627|r 159 DSRFVFSTFIE-GSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 (502)
Q Consensus 159 NpryTFDnFVV-G~sN~lA~aAA-kaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~a 215 (502)
...|+||...- ..++..-|..+ +.+.+.-=.+|. --+|-||.+|.||||-|.+
T Consensus 42 ~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n----~ti~aYGqTGSGKTyTm~G 96 (325)
T cd01369 42 GKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYN----GTIFAYGQTGSGKTYTMEG 96 (325)
T ss_pred CCEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEEECCCCCCCCCEECC
T ss_conf 824556857199999899999988999999967786----4699745789998625127
No 412
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=92.90 E-value=0.13 Score=31.57 Aligned_cols=53 Identities=21% Similarity=0.406 Sum_probs=34.5
Q ss_pred CCHHHHHHHCC-CCCHHHHHHH-HHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 64478876328-8614789999-999982410013655555489862788885799999
Q gi|254780627|r 159 DSRFVFSTFIE-GSSNRVALTA-AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 (502)
Q Consensus 159 NpryTFDnFVV-G~sN~lA~aA-AkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~a 215 (502)
...|+||...- ..+++-.|.. ++.+.+.--.+|.. -+|-||.+|.||||=|.+
T Consensus 47 ~~~f~FD~vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~----ti~aYGqTGSGKTyTm~G 101 (333)
T cd01371 47 PKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNG----TIFAYGQTGTGKTFTMEG 101 (333)
T ss_pred CCEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCE----EEEEECCCCCCCEEECCC
T ss_conf 7266646686999998999999989999998488744----899743689987177468
No 413
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.89 E-value=0.75 Score=26.09 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=32.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
Q ss_conf 8986278888579999999999863068816864698889
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~ 238 (502)
..+-|+.|.|||--+-=+++.+.++ +.+|..++++.|-
T Consensus 209 IaLVGvnGvGKTTTiAKLA~~l~~~--gkkV~LVAaDTFR 246 (407)
T PRK12726 209 ISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFR 246 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCC
T ss_conf 9998999897899999999999977--9917999706677
No 414
>PRK05629 hypothetical protein; Validated
Probab=92.88 E-value=0.86 Score=25.66 Aligned_cols=177 Identities=14% Similarity=0.106 Sum_probs=94.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCC---CCEEEEEHHHH-HHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCC
Q ss_conf 986278888579999999999863068---81686469888-99999998619889999997403102054444531750
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQPN---LRVVYLTAEYF-MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~~~---~~v~y~~~e~F-~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~ 275 (502)
||||.-..=.-.-.+++-+.+....|+ ..+.++.+.+- ..+++++.. ..-|-+ --++++-+.+. .++.
T Consensus 20 Ll~G~E~yLid~a~~~l~~~i~~~~~~~~~~n~~~~~~~e~~~~~l~~a~~---~~~F~~----~RlVvv~~~~~-~~~~ 91 (331)
T PRK05629 20 LVLGEDEFLAERARINIVHDIRSSMASPDSLQVTTLKASEITQGELLDALS---PSLFAE----DRVVVLTNMDQ-AGQD 91 (331)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHCC---CCCCCC----CEEEEEECHHH-CCHH
T ss_conf 997171999999999999999862887446225885078799999998737---588888----25999957253-0644
Q ss_pred HHHHHHHHHHHHHHCC--CEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 6999999999988569--87999648756761363034576530211577515888999999999998864311689789
Q gi|254780627|r 276 IQHEFCHLLNSLLDSA--KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 (502)
Q Consensus 276 tqee~f~~~n~l~~~g--kqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~ 353 (502)
..+.++ +++.+-. --+|+..... ..=+.+-..|. .-|.+++..++.-.....-++.. +...|..++
T Consensus 92 ~~d~ll---~y~~~p~p~t~LV~~~~~~-dkrkkl~k~l~---k~g~v~e~~~l~~~~l~~wi~~~-----~~~~g~~i~ 159 (331)
T PRK05629 92 AVDLAL---SAAVDPSPGTYLIVMHSGG-GRSKSMVKKLE---KVAVVHDAAKLKDRDRPGWVKQE-----FKNHKVQVT 159 (331)
T ss_pred HHHHHH---HHHHCCCCCEEEEEEECCC-CCCHHHHHHHH---CCEEEEECCCCCHHHHHHHHHHH-----HHHCCCCCC
T ss_conf 799999---9841999964999984587-51067999986---07469866889999999999999-----998699979
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 899999985027888999999999999863024687788999998
Q gi|254780627|r 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLS 398 (502)
Q Consensus 354 ~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~ 398 (502)
.+++.+|++.+.+|.++|.+.+.+|.++ ..+.||.+.+.+...
T Consensus 160 ~~A~~~L~~~~G~DL~~l~~El~KL~~~--~~g~It~e~V~~~~~ 202 (331)
T PRK05629 160 PDVIHALLEGVGSDLRELASAVSQLVED--TQGNVTVEKVRAYYV 202 (331)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCCCCCHHHHHHHHC
T ss_conf 9999999999680499999999998407--799858999999826
No 415
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=92.79 E-value=0.88 Score=25.58 Aligned_cols=152 Identities=14% Similarity=0.176 Sum_probs=79.5
Q ss_pred CE--EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHH--HHHHCCCHHHHHHHHHHCCHHHHHHHHHHC
Q ss_conf 54--89862788885799999999998630688168646988899999--998619889999997403102054444531
Q gi|254780627|r 197 NP--LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA--SAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 (502)
Q Consensus 197 NP--Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~--~a~~~~~~~~fr~~~r~~DvLliDDiqfl~ 272 (502)
+| +|+-|++|.|||.+...+-..+ ....++.+.+++|-..+- ..+.......+-. -.|..+
T Consensus 11 ~Pkai~laG~pGAGKS~~~~~~~~~~----~~~~~v~In~D~~r~~~P~y~~l~~~~~~~~~~-----------~~~~~a 75 (191)
T pfam06414 11 RPVAVLLGGQPGAGKTELARALLEEL----GGGNVVRIDPDELRTYHPDYDELQKADPKDASE-----------LTQPDA 75 (191)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC----CCCCCEEECCHHHHHHHHHHHHHHHCCHHHHHH-----------HHHHHH
T ss_conf 98799995799888899999998753----789938971358788777478655407677899-----------989999
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHCCCCHHHHHHHHCCEEEEE---CCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 750699999999998856987999648-7567613630345765302115775---158889999999999988643116
Q gi|254780627|r 273 GKLIQHEFCHLLNSLLDSAKQVVAAAD-RPPSELESLDPRIRSRLQGGVSVPL---GLHDYEMRFSILKNRLAISQKEDP 348 (502)
Q Consensus 273 gk~tqee~f~~~n~l~~~gkqiv~tsd-~~P~~l~~l~~rL~SR~~~Gl~~~i---~~Pd~e~r~~Il~~k~~~~~~~~~ 348 (502)
++. .-.+++...+++.-+|+=+- +.|..+..+-.+|... |--|.+ .-|.--.+..+..+-.. ... .
T Consensus 76 ~~~----~~~~~~~a~~~r~n~iiegT~~~~~~~~~~~~~lk~~---GY~v~v~~Va~~~e~S~~r~~~Ry~~-~~~--~ 145 (191)
T pfam06414 76 SRW----VEKLIDYAIERGYNIILEGTLRSPDVARKLARKLKAA---GYEVEVYVVAVPPELSWLGVLDRYEE-ELA--A 145 (191)
T ss_pred HHH----HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHC---CCEEEEEEEECCHHHHHHHHHHHHHH-HHC--C
T ss_conf 999----9999999997599989857778979999999999978---99799999988999999999999985-105--7
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf 8978989999998502788899999
Q gi|254780627|r 349 KLNINEEVLMHVARTVTTSGRELDG 373 (502)
Q Consensus 349 ~~~l~~~v~~~la~~~~~~vR~Leg 373 (502)
|=.+|.++.+-...++..+++.|+.
T Consensus 146 gR~v~~~~hd~~~~~~~~~~~~l~~ 170 (191)
T pfam06414 146 GRRVPKEVHDAAYNGLPESVEALER 170 (191)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 8748999999999859999999996
No 416
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.79 E-value=0.4 Score=28.02 Aligned_cols=22 Identities=45% Similarity=0.480 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8986278888579999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~ 220 (502)
+-|.|++|.|||-|++.+...+
T Consensus 66 vaIVG~sGSGKSTLl~lL~gl~ 87 (282)
T cd03291 66 LAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999981999999995787
No 417
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=92.79 E-value=0.054 Score=34.22 Aligned_cols=53 Identities=19% Similarity=0.324 Sum_probs=35.2
Q ss_pred CCHHHHHHHC-CCCCHHHHHHH-HHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 6447887632-88614789999-999982410013655555489862788885799999
Q gi|254780627|r 159 DSRFVFSTFI-EGSSNRVALTA-AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 (502)
Q Consensus 159 NpryTFDnFV-VG~sN~lA~aA-AkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~a 215 (502)
...|+||... ...+++--|.. +.-+.+.--.+|.. -+|-||.+|.||||-|.+
T Consensus 39 ~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~----ti~aYGqTGSGKTyTm~G 93 (341)
T cd01372 39 DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNA----TVLAYGQTGSGKTYTMGT 93 (341)
T ss_pred CCEEECCEECCCCCCHHHHHHHHHHHHHHHHHCCCCE----EEEEECCCCCCCCCCCCC
T ss_conf 8268769775999998999999989999998677751----699971478898644136
No 418
>pfam02283 CobU Cobinamide kinase / cobinamide phosphate guanyltransferase. This family is composed of a group of bifunctional cobalamin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape.
Probab=92.75 E-value=0.55 Score=27.02 Aligned_cols=95 Identities=26% Similarity=0.330 Sum_probs=55.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE-EHHHHHHHHHHHH---HCCC------HHH---HHH---HHHHCCHH
Q ss_conf 986278888579999999999863068816864-6988899999998---6198------899---999---97403102
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYL-TAEYFMWRFASAI---RDNC------ALN---LKD---SLRNIDLL 263 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~-~~e~F~~~~~~a~---~~~~------~~~---fr~---~~r~~DvL 263 (502)
||-||++.||+..-...+. ..+ .++.|+ |++-|=.+|-.-| |... +++ +-+ ....-|++
T Consensus 2 LVtGG~rSGKS~~AE~la~----~~~-~~~~YiAT~~~~D~Em~~RI~~Hr~~R~~~w~tiE~~~~l~~~l~~~~~~~~v 76 (166)
T pfam02283 2 LVTGGARSGKSRFAERLAL----ASG-GPVVYIATAQAFDDEMAERIARHRARRPAGWTTIEEPLDLAEALARLPGGDVV 76 (166)
T ss_pred EEECCCCCCHHHHHHHHHH----HCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCCCCEE
T ss_conf 8868877338999999998----559-98199976988888999999999971899967997744599999846989869
Q ss_pred HHHHHHHH------CCC---CHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 05444453------175---0699999999998856987999648
Q gi|254780627|r 264 LIDDMQFL------QGK---LIQHEFCHLLNSLLDSAKQVVAAAD 299 (502)
Q Consensus 264 liDDiqfl------~gk---~tqee~f~~~n~l~~~gkqiv~tsd 299 (502)
|||++-.+ .+. ...++....++.+.+....+|+.|+
T Consensus 77 LiDclt~wl~N~l~~~~~~~~~~~~~~~ll~~l~~~~~~~ViVsn 121 (166)
T pfam02283 77 LVDCLTLWLTNLLFAGDDEEDIEAEVDELLAALKARPAPVVLVSN 121 (166)
T ss_pred EEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 997177899998762374778999999999999748997999976
No 419
>PRK07261 topology modulation protein; Provisional
Probab=92.72 E-value=0.34 Score=28.54 Aligned_cols=97 Identities=15% Similarity=0.259 Sum_probs=63.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC--CH
Q ss_conf 8986278888579999999999863068816864698889999999861988999999740310205444453175--06
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK--LI 276 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk--~t 276 (502)
..|.|.+|.|||.|-..++... ++.++-+|.++...|- ..
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~--------------------------------------~ip~~~LD~l~w~p~w~~~~ 44 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHY--------------------------------------NCPVLHLDQLHFSSNWQERD 44 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--------------------------------------CCCEEEECCEEECCCCEECC
T ss_conf 9998899986899999999987--------------------------------------97979702278889998888
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCHHHHCCC-CHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 99999999998856987999648756761363-034576530211577515888999999999998
Q gi|254780627|r 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESL-DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 (502)
Q Consensus 277 qee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l-~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~ 341 (502)
.+||.....++.....-|+ -+.-.- .+ +.||. ..-+++=+.-|-.-.-..++++-+.
T Consensus 45 ~~e~~~~~~~~~~~~~WIi-DGny~~----~~~~~rl~---~aD~iI~Ld~p~~~~l~rvikR~l~ 102 (171)
T PRK07261 45 DDDMIADISNFLLKQDWII-EGNYSN----CLYEERMA---EADQIIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred HHHHHHHHHHHHHCCCEEE-ECCCCC----HHHHHHHH---HCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 9999999999984898799-478512----47776797---7999999858499999999999999
No 420
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=92.71 E-value=0.3 Score=28.87 Aligned_cols=62 Identities=21% Similarity=0.289 Sum_probs=37.9
Q ss_pred EEEHHHHHHHHHHHHHCCCHHHHHHHHH-HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 6469888999999986198899999974-03102054444531750699999999998856987999648
Q gi|254780627|r 231 YLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 (502)
Q Consensus 231 y~~~e~F~~~~~~a~~~~~~~~fr~~~r-~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd 299 (502)
+++-.+........++.+ ++.++.|+ ..+.+|||..|-.. ..|.++ +..|...++.+.+.+|
T Consensus 185 ~~Df~Dll~~~~~lL~~~--~~~~~~~~~r~~~ilVDEfQDtn--~~Q~~i---l~~L~~~~~~l~~VGD 247 (494)
T pfam00580 185 ALDFDDLLLLTLELLRSD--PELLEAYRERFKYILVDEFQDTN--PIQYEL---LKLLAGGHPNLFLVGD 247 (494)
T ss_pred CCCHHHHHHHHHHHHHCC--HHHHHHHHHHCCEEECHHHCCCH--HHHHHH---HHHHHCCCCEEEEEEC
T ss_conf 989899999999997319--99999998607265403430264--999999---9998658983999817
No 421
>KOG0609 consensus
Probab=92.70 E-value=0.91 Score=25.50 Aligned_cols=114 Identities=20% Similarity=0.241 Sum_probs=70.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC--------------------CCEEEEEHHHHHHHHHHHHHCCCHHHH
Q ss_conf 555548986278888579999999999863068--------------------816864698889999999861988999
Q gi|254780627|r 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPN--------------------LRVVYLTAEYFMWRFASAIRDNCALNL 253 (502)
Q Consensus 194 ~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~--------------------~~v~y~~~e~F~~~~~~a~~~~~~~~f 253 (502)
..+-+|.+.|++|+|--||- |.+...+|. ..-.|++-+.|. .-+++|.+-++
T Consensus 338 ~~rrtlVLiGa~GvGr~elk----~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e----~dI~~~~~lE~ 409 (542)
T KOG0609 338 FRRRTLVLIGAQGVGRRELK----NKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEME----ADIRAGKFLEY 409 (542)
T ss_pred CCCCEEEEECCCCCCHHHHH----HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHH----HHHHCCCCEEC
T ss_conf 66532899777663669999----99986386555667877677988777798542351048776----55651885524
Q ss_pred HHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHH
Q ss_conf 99974031020544445317506999999999988569879996487567613630345765302115775158889999
Q gi|254780627|r 254 KDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 (502)
Q Consensus 254 r~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~ 333 (502)
-+.=-+..--=+| .+-..+..||.-|++- .|..|..| ++.=-.-.++-|.||+++.-.
T Consensus 410 GEy~~nlYGTs~d----------------sVr~v~~~gKicvLdv--~Pqalk~l----Rt~Ef~PyVIFI~pP~~~~~r 467 (542)
T KOG0609 410 GEYEGNLYGTSLD----------------SVRNVIASGKICVLDV--EPQALKVL----RTAEFKPYVIFIAPPSLEELR 467 (542)
T ss_pred CCCHHCCCCCHHH----------------HHHHHHHHCCEEEEEC--CHHHHHHH----HHHCCCCEEEEECCCCCHHHH
T ss_conf 7502020666089----------------9999997387788744--77775323----330356449983599706678
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780627|r 334 SILK 337 (502)
Q Consensus 334 ~Il~ 337 (502)
+--+
T Consensus 468 ~~r~ 471 (542)
T KOG0609 468 ALRK 471 (542)
T ss_pred HHHH
T ss_conf 8765
No 422
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.69 E-value=0.23 Score=29.67 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=47.5
Q ss_pred HHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHH---HCCEEEEECCCC
Q ss_conf 740310205444453175-069999999999885698799964875676136303457653---021157751588
Q gi|254780627|r 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL---QGGVSVPLGLHD 328 (502)
Q Consensus 257 ~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~---~~Gl~~~i~~Pd 328 (502)
+.+.|+||||.+--. |. .-|+--+..++.+.++|+.|+|.|-... .+. ++.+|- ..|-+-...+++
T Consensus 159 ~~dPDILIIDEaLSV-GD~~F~~Kc~~rm~ef~e~gkTIvfVSHsl~-~Vk----~~C~R~iWLe~G~vr~~G~~~ 228 (549)
T PRK13545 159 HINPDILVIDEALSV-GDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVK----SFCTKALWLHYGQVKEYGDIK 228 (549)
T ss_pred HCCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHH----HHCCEEEEEECCEEEEECCHH
T ss_conf 249999999462005-7899999999999999978988999958889-999----857310634386678748888
No 423
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=92.69 E-value=0.11 Score=31.97 Aligned_cols=53 Identities=19% Similarity=0.429 Sum_probs=33.7
Q ss_pred CCHHHHHHHCC-CCCHHHHHHH-HHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 64478876328-8614789999-999982410013655555489862788885799999
Q gi|254780627|r 159 DSRFVFSTFIE-GSSNRVALTA-AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 (502)
Q Consensus 159 NpryTFDnFVV-G~sN~lA~aA-AkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~a 215 (502)
-..|+||...- ..+++..|.. ++.+.+.--.+|.. -+|-||.+|.||||-|.+
T Consensus 53 ~~~f~FD~vf~~~~tQ~~vy~~~~~plv~~~l~G~n~----ti~aYGqTGSGKTyTm~G 107 (338)
T cd01370 53 ELKYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNA----TVFAYGATGAGKTHTMLG 107 (338)
T ss_pred CEEEECCCEECCCCCHHHHHHHHHHHHHHHHHCCCCE----EEEEECCCCCCCCEEECC
T ss_conf 7177646350999998999999989999998588755----899948999998978578
No 424
>KOG4280 consensus
Probab=92.68 E-value=0.23 Score=29.79 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=37.6
Q ss_pred CCCHHHHHHHCCCCCHHHH-H-HHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 7644788763288614789-9-999999824100136555554898627888857999999
Q gi|254780627|r 158 LDSRFVFSTFIEGSSNRVA-L-TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 (502)
Q Consensus 158 LNpryTFDnFVVG~sN~lA-~-aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai 216 (502)
-++.||||.-.-.+++|.- | ..+.-+.++-=.+|.+ -.|=||-+|.||||=|.+.
T Consensus 50 ~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNg----tvFaYGQtGsGKTyTM~G~ 106 (574)
T KOG4280 50 KPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNG----TVFAYGQTGSGKTYTMIGP 106 (574)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC----EEEEECCCCCCCCEEEECC
T ss_conf 89873323554699779999998718999998544684----3886225789873477478
No 425
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.64 E-value=0.18 Score=30.48 Aligned_cols=35 Identities=31% Similarity=0.381 Sum_probs=31.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 89862788885799999999998630688168646
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~ 233 (502)
=+|..|+-.|||-||+.|+|.+..+||++.++.+-
T Consensus 414 gLIVapPkaGKT~ll~~ia~ai~~N~pe~~l~vlL 448 (667)
T PRK12678 414 GLIVSPPKAGKTTILQDIANAITTNNPECHLMVVL 448 (667)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 46757997872599999999998569972899997
No 426
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=92.62 E-value=0.059 Score=33.95 Aligned_cols=52 Identities=21% Similarity=0.369 Sum_probs=35.8
Q ss_pred CHHHHHHHCCC-CCHHHHHH-HHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 44788763288-61478999-9999982410013655555489862788885799999
Q gi|254780627|r 160 SRFVFSTFIEG-SSNRVALT-AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 (502)
Q Consensus 160 pryTFDnFVVG-~sN~lA~a-AAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~a 215 (502)
..|+||...-. .+++.-|. .++.+.+.--.+|.. -+|-||.+|.||||-|.+
T Consensus 47 ~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~----ti~aYGqTGSGKTyTm~G 100 (319)
T cd01376 47 KKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNA----TVFAYGSTGAGKTHTMLG 100 (319)
T ss_pred EEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCE----EEEEECCCCCCCCEEECC
T ss_conf 466648671899998999988659999998689855----999967899987468537
No 427
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=92.62 E-value=0.93 Score=25.43 Aligned_cols=287 Identities=18% Similarity=0.203 Sum_probs=140.3
Q ss_pred HHHHHHHCCCCCHHHH--HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
Q ss_conf 4788763288614789--99999998241001365555548986278888579999999999863068816864698889
Q gi|254780627|r 161 RFVFSTFIEGSSNRVA--LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 (502)
Q Consensus 161 ryTFDnFVVG~sN~lA--~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~ 238 (502)
.+-++. ++|.|-.|- .....-||.++ -+..|.|.+|+||--.-+|| |+.. .+.+.-.+|+++.-+-
T Consensus 219 ~~~~~~-iIG~S~am~~ll~~i~~VA~Sd---------~tVLi~GETGtGKElvAraI-H~~S-~R~~kPfV~~NCAAlP 286 (550)
T COG3604 219 VLEVGG-IIGRSPAMRQLLKEIEVVAKSD---------STVLIRGETGTGKELVARAI-HQLS-PRRDKPFVKLNCAALP 286 (550)
T ss_pred HCCCCC-CCCCCHHHHHHHHHHHHHHCCC---------CEEEEECCCCCCHHHHHHHH-HHHC-CCCCCCCEEEECCCCC
T ss_conf 024456-2306999999999999872689---------80798458885389999999-8737-5557986663122253
Q ss_pred HHHHHHH----HC----CCHHHHHHHHH--HCCHHHHHHHHHHC----CC--C-HHHHHHHHH--HHHHHCCCEEEEECC
Q ss_conf 9999998----61----98899999974--03102054444531----75--0-699999999--998856987999648
Q gi|254780627|r 239 WRFASAI----RD----NCALNLKDSLR--NIDLLLIDDMQFLQ----GK--L-IQHEFCHLL--NSLLDSAKQVVAAAD 299 (502)
Q Consensus 239 ~~~~~a~----~~----~~~~~fr~~~r--~~DvLliDDiqfl~----gk--~-tqee~f~~~--n~l~~~gkqiv~tsd 299 (502)
..+..+= .+ +....=+-||- +=--|.+|.|-.+. -| + -||-=|.-. |.-+.-.-.||.+..
T Consensus 287 esLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATN 366 (550)
T COG3604 287 ESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATN 366 (550)
T ss_pred HHHHHHHHHCCCCCCCCCCHHCCCCCEEECCCCEEECHHHCCCCHHHHHHHHHHHHHCCEEECCCCCEEEEEEEEEECCC
T ss_conf 78888887453322333510146763565579757602203678778899999986365253479963677789982135
Q ss_pred CCHHHHC---CCCHHHHHHHHCCEEEEECCCCHHHHH-------H-HHHHHHHHHHHHCCCCCCCHHHHHHHHH-HCCCC
Q ss_conf 7567613---630345765302115775158889999-------9-9999998864311689789899999985-02788
Q gi|254780627|r 300 RPPSELE---SLDPRIRSRLQGGVSVPLGLHDYEMRF-------S-ILKNRLAISQKEDPKLNINEEVLMHVAR-TVTTS 367 (502)
Q Consensus 300 ~~P~~l~---~l~~rL~SR~~~Gl~~~i~~Pd~e~r~-------~-Il~~k~~~~~~~~~~~~l~~~v~~~la~-~~~~~ 367 (502)
|--.+.- .|-+-|.-|++ |++|.-|-+-.|- . .++ |+.... -...+.++.++++.|.. .+.||
T Consensus 367 RDL~~~V~~G~FRaDLYyRLs---V~Pl~lPPLRER~~DIplLA~~Fle-~~~~~~-gr~~l~ls~~Al~~L~~y~wPGN 441 (550)
T COG3604 367 RDLEEMVRDGEFRADLYYRLS---VFPLELPPLRERPEDIPLLAGYFLE-KFRRRL-GRAILSLSAEALELLSSYEWPGN 441 (550)
T ss_pred HHHHHHHHCCCCHHHHHHCCC---CCCCCCCCCCCCCCCHHHHHHHHHH-HHHHHC-CCCCCCCCHHHHHHHHCCCCCCC
T ss_conf 309999874951554532102---0013789834588667999999999-998863-97640339899999973999971
Q ss_pred HHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHC--CCCCHHHCHHH
Q ss_conf 8999999999999863024687---788999998763037887579899999999980999999408--88774014457
Q gi|254780627|r 368 GRELDGAFNQLVFRHSFAPILT---AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS--NRRVRTVVRPR 442 (502)
Q Consensus 368 vR~Legal~~l~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~i~~~~I~~~V~~~~~i~~~~l~s--~~R~~~i~~~R 442 (502)
|||||.++.|-...+ ++.++ +-....-+........... .+. + .....+-+ .-|...=-.-|
T Consensus 442 VRELen~veRavlla--~~~~~~~d~~~l~~~~~~~~~~~~~~~-~p~-----~-----~~~~~~p~~~~l~~~~~~~eR 508 (550)
T COG3604 442 VRELENVVERAVLLA--GRLTRRGDLCTLELSLSALLWKTLPAP-EPS-----A-----LPEPALPGEHTLREATEEFER 508 (550)
T ss_pred HHHHHHHHHHHHHHC--CCCCCCCCEEEHHHHHHCCCCCCCCCC-CCC-----C-----CCCCCCCCCCCHHHHHHHHHH
T ss_conf 999998999999970--476777651016555301212467899-865-----5-----677557765651555778999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999999985156878999884798437999999999
Q gi|254780627|r 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 (502)
Q Consensus 443 qiamyL~r~~t~~s~~~IG~~fg~rdHsTV~~a~~ki 479 (502)
|. +-=|=+-++..-..-.+.+| -|-+|+.+..++.
T Consensus 509 ~~-I~~aL~~~~~~~a~AAr~LG-l~~~~L~~~~kRl 543 (550)
T COG3604 509 QL-IIAALEETNGNWAGAARRLG-LTRRTLLYRMKRL 543 (550)
T ss_pred HH-HHHHHHHHCCHHHHHHHHHC-CCHHHHHHHHHHC
T ss_conf 99-99999981981999999958-9988999999972
No 428
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=92.61 E-value=0.28 Score=29.12 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 898627888857999999999986
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIK 222 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~ 222 (502)
+-+-|+.|.|||-|+..|..-+..
T Consensus 34 ~gllG~NGaGKSTllk~i~Gl~~p 57 (218)
T cd03266 34 TGLLGPNGAGKTTTLRMLAGLLEP 57 (218)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 999999998499999999779778
No 429
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.61 E-value=0.11 Score=31.93 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=27.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
Q ss_conf 8986278888579999999999863068816864698889
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~ 238 (502)
+-|.|+||.|||.|.+++...+ ++.++..++.++|-
T Consensus 2 IgI~G~sgsGKTT~a~~L~~~l----~~~~v~~i~~D~yy 37 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL----GNPKVVIISQDSYY 37 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHH----CCCCEEEEECCCCC
T ss_conf 8988999885999999999980----99985899788888
No 430
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.57 E-value=0.25 Score=29.46 Aligned_cols=33 Identities=30% Similarity=0.318 Sum_probs=23.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 898627888857999999999986306881686469
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~ 234 (502)
.-|-||-|.|||-||.++..-+. |..-.+++..
T Consensus 31 ~~iiGpNG~GKSTLLk~l~~~l~---p~~G~V~l~g 63 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDG 63 (258)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC---CCCCEEEECC
T ss_conf 99989988899999999865678---8887799999
No 431
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=92.55 E-value=0.17 Score=30.64 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8986278888579999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~ 220 (502)
+-|-|++|.|||.|+.-+..-.
T Consensus 494 vaIvG~sGsGKSTL~kll~Gl~ 515 (694)
T TIGR03375 494 VAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred EEEEECCCCCHHHHHHHHCCCC
T ss_conf 9998058987889999855675
No 432
>PRK05986 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=92.55 E-value=0.95 Score=25.36 Aligned_cols=112 Identities=19% Similarity=0.193 Sum_probs=66.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE---HHHHHHHHHHHHH----------------CCC----------
Q ss_conf 89862788885799999999998630688168646---9888999999986----------------198----------
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT---AEYFMWRFASAIR----------------DNC---------- 249 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~---~e~F~~~~~~a~~----------------~~~---------- 249 (502)
+.||=+.|=|||-- |+|..++....+.+|+++. ....+-|.. ++. ..+
T Consensus 25 i~VytG~GKGKTTA--AlGlalRA~G~G~rV~ivQFlKg~~~~GE~~-~l~~~~i~~~~~g~g~~~~~~~~e~d~~~a~~ 101 (190)
T PRK05986 25 LIVHTGNGKGKSTA--AFGMALRAVGHGKKVGVVQFIKGAWSTGERN-LLEGPGVEFHVMGTGFTWETQDRERDIAAARE 101 (190)
T ss_pred EEEEECCCCCHHHH--HHHHHHHHHCCCCEEEEEEEECCCCCHHHHH-HHCCCCCEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 99980699871889--9999999836998899999944885457788-74379828998789985778971899999999
Q ss_pred -HHHHHHHHH--HCCHHHHHHHHHHCCC-C-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHH
Q ss_conf -899999974--0310205444453175-0-6999999999988569879996487567613630345765
Q gi|254780627|r 250 -ALNLKDSLR--NIDLLLIDDMQFLQGK-L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 (502)
Q Consensus 250 -~~~fr~~~r--~~DvLliDDiqfl~gk-~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR 315 (502)
.+..++... .+|+|++|.|-..-.. - +.+++..+++. ...+--+|+|+..+|.+|-.+-| |+|.
T Consensus 102 ~~~~a~~~l~~~~~dlvVLDEi~~Al~~gll~~eevi~~L~~-rp~~~evVLTGR~~p~~L~e~AD-lVTE 170 (190)
T PRK05986 102 GWEEAKRMLADESYDLVVLDELTYALKYGYLDLEEVLEALNN-RPGMQHVVITGRGAPRELIEAAD-LVTE 170 (190)
T ss_pred HHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHCC-HHHH
T ss_conf 999999998588888895376799985599589999999982-89987699979999999998650-5430
No 433
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.54 E-value=0.14 Score=31.33 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 4898627888857999999999
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANA 219 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~ 219 (502)
-+-|.|++|.|||-|++.+...
T Consensus 29 ~v~ivG~sGsGKSTLl~ll~gl 50 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999999999899999997438
No 434
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.53 E-value=0.59 Score=26.85 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=14.7
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 898627888857999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANA 219 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~ 219 (502)
+-|-|++|.|||-|++.+.--
T Consensus 31 vaiiG~nGsGKSTLl~~l~Gl 51 (275)
T PRK13639 31 IAILGPNGAGKSTLFLHFNGI 51 (275)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999996499999999739
No 435
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.52 E-value=0.11 Score=32.01 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=31.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 8986278888579999999999863068816864698889999999861988999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~ 256 (502)
+.|.||||.|||-||+-+|.--. |+.-.+++... -+..+..+....||.+
T Consensus 34 vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~-----~~~~l~~~~~~~~R~~ 83 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGK-----DLTKLSEKELAKLRRK 83 (226)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC---CCCCEEEECCE-----ECCCCCHHHHHHHHHH
T ss_conf 99989999989999999964667---88846999988-----8675898899999777
No 436
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA; InterPro: IPR014136 This entry represents the Ti-type conjugative transfer relaxase TraA. TraA contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, IPR005053 from INTERPRO) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, IPR014129 from INTERPRO). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer ..
Probab=92.51 E-value=0.96 Score=25.33 Aligned_cols=112 Identities=21% Similarity=0.345 Sum_probs=76.5
Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCC------CH
Q ss_conf 999999982410013655555489862788885799999999998630688168646988899999998619------88
Q gi|254780627|r 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN------CA 250 (502)
Q Consensus 177 ~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~------~~ 250 (502)
+.|-+.|...++-. .|-|-.|.|||-||.|. ++.++.. +-+| ..--..=.-..+|+.. ++
T Consensus 420 ~~Av~hvt~s~~ia---------vVvG~AGtGKSt~L~aA-R~AWe~~-Gy~V---~GAALsGKAAegLe~~sGI~SRTL 485 (888)
T TIGR02768 420 KEAVRHVTGSGDIA---------VVVGRAGTGKSTMLKAA-REAWEAA-GYRV---IGAALSGKAAEGLEAESGIESRTL 485 (888)
T ss_pred HHHHHHHCCCCCEE---------EEECCCCCCHHHHHHHH-HHHHHHC-CCEE---EEHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 99987532899648---------99748998766789999-9999873-9778---715455589887300268750478
Q ss_pred HH--H-----HHHHHHCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCH
Q ss_conf 99--9-----999740310205444453175--069999999999885698799964875676136303
Q gi|254780627|r 251 LN--L-----KDSLRNIDLLLIDDMQFLQGK--LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 (502)
Q Consensus 251 ~~--f-----r~~~r~~DvLliDDiqfl~gk--~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~ 310 (502)
.. | ++.+.+-|||+||- +|= .-|.+ ..+..=.++|-.|||.+| |.+|+-++.
T Consensus 486 ASle~aW~~G~d~L~~~dvLviDE----AGMV~S~Qm~--r~l~~A~~AGaKvVLvGD--~~QLqaI~A 546 (888)
T TIGR02768 486 ASLEYAWANGRDLLEDKDVLVIDE----AGMVGSRQMA--RVLKEAEEAGAKVVLVGD--PEQLQAIEA 546 (888)
T ss_pred HHHHHHHHCCCCCCCCCCEEEEEC----CCCHHHHHHH--HHHHHHHHCCCCEEEECC--HHHHCHHHC
T ss_conf 879999873875224776689851----5441467788--999999872760598488--578244244
No 437
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=92.50 E-value=0.13 Score=31.54 Aligned_cols=37 Identities=32% Similarity=0.527 Sum_probs=26.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH------HCC-CCCEEEEEH
Q ss_conf 54898627888857999999999986------306-881686469
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIK------RQP-NLRVVYLTA 234 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~------~~~-~~~v~y~~~ 234 (502)
+=|+|-|+||.|||-|+.||+. +.. ..| +.+++|++-
T Consensus 420 ~~llI~G~SG~GKTsLlRaiaG-LWP~g~G~I~~P~~~~~lflpQ 463 (604)
T COG4178 420 ERLLITGESGAGKTSLLRALAG-LWPWGSGRISMPADSALLFLPQ 463 (604)
T ss_pred CEEEEECCCCCCHHHHHHHHHC-CCCCCCCCEECCCCCCEEEECC
T ss_conf 8799878999878899999964-5856787441689875577148
No 438
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.50 E-value=0.4 Score=28.01 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 89862788885799999999998
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASI 221 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~ 221 (502)
+-|-|++|.|||-|+..|..-..
T Consensus 30 ~~iiG~nGaGKSTLlk~i~Gl~~ 52 (211)
T cd03225 30 VLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99988999989999999964677
No 439
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.48 E-value=0.52 Score=27.23 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8986278888579999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~ 220 (502)
+-|-|++|.|||-|++.+.--+
T Consensus 37 vaiiG~nGsGKSTL~~~l~Gll 58 (283)
T PRK13640 37 TALIGHNGSGKSTISKLINGLL 58 (283)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999987999999996403
No 440
>KOG2878 consensus
Probab=92.48 E-value=0.2 Score=30.20 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=34.5
Q ss_pred EE--EEECCCCCCHHHHHHHHHHHHHHHCC-CCCEEEEEHHHHH
Q ss_conf 48--98627888857999999999986306-8816864698889
Q gi|254780627|r 198 PL--FIHASVGLGKTHLLQAIANASIKRQP-NLRVVYLTAEYFM 238 (502)
Q Consensus 198 PL--fi~G~~GlGKTHLl~ai~~~~~~~~~-~~~v~y~~~e~F~ 238 (502)
|| ++-||.|.|||.|.-|+-+++.+++- +.++.|+|-++|-
T Consensus 31 Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFY 74 (282)
T KOG2878 31 PLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFY 74 (282)
T ss_pred CEEEEECCCCCCCCEEEHHHHHHHHHHHHCCCCCEEEEEECCEE
T ss_conf 67999337888883043145678999985364414899721036
No 441
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.47 E-value=0.13 Score=31.38 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=31.4
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
Q ss_conf 86278888579999999999863068816864698889
Q gi|254780627|r 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 (502)
Q Consensus 201 i~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~ 238 (502)
|-|+||.|||.+.+.+...+.+..++.+|.-++-+.|.
T Consensus 4 IaG~sgSGKST~a~~l~~~l~~~~~~~~v~ii~~D~f~ 41 (220)
T cd02025 4 IAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 78899877999999999986002699948999787875
No 442
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.42 E-value=0.98 Score=25.26 Aligned_cols=162 Identities=18% Similarity=0.260 Sum_probs=89.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH---------------CCC--------HHHH
Q ss_conf 54898627888857999999999986306881686469888999999986---------------198--------8999
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR---------------DNC--------ALNL 253 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~---------------~~~--------~~~f 253 (502)
+-..+.|=-|.|||--.--+++++.++ +.+|..+.++-|---=+.-++ +.+ ++.|
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~--~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKK--GKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHH
T ss_conf 589998156797486899999999974--994589850567868999999999860985316778899799999999999
Q ss_pred HHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHH-------------------------------------------
Q ss_conf 999740310205444453175-069999999999885-------------------------------------------
Q gi|254780627|r 254 KDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD------------------------------------------- 289 (502)
Q Consensus 254 r~~~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~------------------------------------------- 289 (502)
++ ..+||+|+|- +|+ ..-++++.=+-++..
T Consensus 179 k~--~~~DvvIvDT----AGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlTKlDGd 252 (451)
T COG0541 179 KE--EGYDVVIVDT----AGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILTKLDGD 252 (451)
T ss_pred HH--CCCCEEEEEC----CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 97--4998899968----87330309999999999855398748998764445678999999866269864999714678
Q ss_pred ------------CCCEEEEECC-CCHHHHCCC-CHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf ------------6987999648-756761363-03457653021157751588899999999999886431168978989
Q gi|254780627|r 290 ------------SAKQVVAAAD-RPPSELESL-DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 (502)
Q Consensus 290 ------------~gkqiv~tsd-~~P~~l~~l-~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~ 355 (502)
-|+.|-|.+- -...+|.-| ++|+.||+.+ .-|..+-+. |++. .++++
T Consensus 253 aRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILG-------MGDv~sLvE----k~~~--------~~d~e 313 (451)
T COG0541 253 ARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILG-------MGDVLSLIE----KAEE--------VVDEE 313 (451)
T ss_pred CCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCC-------CCCHHHHHH----HHHH--------HHHHH
T ss_conf 7622888569987898599745887354777495889998537-------320999999----9998--------65699
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 999998502788899999999999986302
Q gi|254780627|r 356 VLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 (502)
Q Consensus 356 v~~~la~~~~~~vR~Legal~~l~~~~~~~ 385 (502)
-.+-+++.+...==.|+-.+.++-....++
T Consensus 314 ~a~~~~~kl~~g~FtL~Df~~Ql~~m~kmG 343 (451)
T COG0541 314 EAEKLAEKLKKGKFTLEDFLEQLEQMKKMG 343 (451)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
T ss_conf 999999999849978999999999987338
No 443
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=92.36 E-value=0.29 Score=29.05 Aligned_cols=67 Identities=9% Similarity=0.121 Sum_probs=41.5
Q ss_pred HHHHHHHHHHCCCHHHHH--C---CCCCHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 999999998099999940--8---8877401445799999999851568789998847984379999999999998616
Q gi|254780627|r 413 DIQRMVAKHYNISRNDLL--S---NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 (502)
Q Consensus 413 ~I~~~V~~~~~i~~~~l~--s---~~R~~~i~~~RqiamyL~r~~t~~s~~~IG~~fg~rdHsTV~~a~~ki~~~~~~d 486 (502)
.+.+.. +-||+...++. . .+|.=-+..|+ .+.+.++.|..+.-.|-+-+-.+=...|+.+..+-..|
T Consensus 712 ~~~~~Y-~~fGLn~rqieiIa~a~pKRdYy~~s~~------g~Rlf~L~L~~~~la~~~~s~~~d~~~~~~l~~~~g~~ 783 (815)
T PRK13873 712 QIAAIY-RRFGLNDRQIEILARATPKRDYYCQSRR------GNRLFELGLGPVALAFCAASSKADQALIDRVLAEHGRD 783 (815)
T ss_pred HHHHHH-HHCCCCHHHHHHHHHCCCCCEEEEECCC------CCEEEECCCCHHHHHEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 068999-8749999999999733746635898799------87789738970421000038888999999999981910
No 444
>PRK05580 primosome assembly protein PriA; Validated
Probab=92.35 E-value=1 Score=25.20 Aligned_cols=106 Identities=19% Similarity=0.255 Sum_probs=57.6
Q ss_pred CCCEEEEECCCCCCHHHH-HHHHHHHHHHHCCCCCEEEEEHH-HHHHHHHHHHHCC---C-------------HHHHHHH
Q ss_conf 555489862788885799-99999999863068816864698-8899999998619---8-------------8999999
Q gi|254780627|r 195 RLNPLFIHASVGLGKTHL-LQAIANASIKRQPNLRVVYLTAE-YFMWRFASAIRDN---C-------------ALNLKDS 256 (502)
Q Consensus 195 ~~NPLfi~G~~GlGKTHL-l~ai~~~~~~~~~~~~v~y~~~e-~F~~~~~~a~~~~---~-------------~~~fr~~ 256 (502)
.+++.++||-+|.|||.. +++|.. ++++ +..|+++-.| ..+.+++..++.. . ...|++-
T Consensus 185 ~~~~~LL~GvTGSGKTevYl~li~~-~l~~--GkqvLiLvPEI~lt~q~~~rl~~~fg~~v~v~HS~ls~~eR~~~w~~i 261 (699)
T PRK05580 185 GFSAFLLDGVTGSGKTEVYLQAIAE-ALAQ--GKQALVLVPEIALTPQLLARFRARFGARVAVLHSGLSDGERYRAWLAA 261 (699)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHH-HHHC--CCCEEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHH
T ss_conf 8871787478986079999999999-9973--997899917678789999999987099579964889857999999999
Q ss_pred ------------------HHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHH----HCCCEEEEECCCCHH
Q ss_conf ------------------74031020544445317506999999999988----569879996487567
Q gi|254780627|r 257 ------------------LRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLL----DSAKQVVAAADRPPS 303 (502)
Q Consensus 257 ------------------~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~----~~gkqiv~tsd~~P~ 303 (502)
+.+..+.++||=|.-+=|+...--+|.-+-.. ..|-.+|+.|-.|--
T Consensus 262 ~~G~~~IVIGtRSAvFaP~~nLgLIIVDEEhd~SYKq~~~Pry~ARdvA~~Ra~~~~~~liLgSaTPSl 330 (699)
T PRK05580 262 LRGEARVVIGTRSALFAPFKNLGLIIVDEEHDDSYKQQDGPRYHARDVAVLRAKQEGCPVVLGSATPSL 330 (699)
T ss_pred HCCCCEEEEECCCEEECCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCH
T ss_conf 769971999736011065789848999736545444666876119999999999849988961689999
No 445
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.30 E-value=0.21 Score=29.97 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8986278888579999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~ 220 (502)
+-|-|++|.|||-|+..|..-+
T Consensus 33 vaivG~nGsGKSTL~~~l~Gll 54 (276)
T PRK13650 33 LSIIGHNGSGKSTTVRLIDGLL 54 (276)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999987999999997388
No 446
>PRK05480 uridine kinase; Provisional
Probab=92.28 E-value=0.16 Score=30.92 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=28.7
Q ss_pred CEE--EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHH
Q ss_conf 548--9862788885799999999998630688168646988899
Q gi|254780627|r 197 NPL--FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 (502)
Q Consensus 197 NPL--fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~ 239 (502)
-|+ =|.|+||.|||.|.+++...+. ...+..++.++|-.
T Consensus 5 ~P~iIgIaG~SgSGKTT~a~~L~~~l~----~~~v~vi~~D~Yy~ 45 (209)
T PRK05480 5 QPIIIGIAGGSGSGKTTVASTIYEELG----DESIAVISQDSYYK 45 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC----CCCEEEEECCCCCC
T ss_conf 988999989997789999999999808----68759995544124
No 447
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=92.18 E-value=0.96 Score=25.32 Aligned_cols=14 Identities=21% Similarity=0.226 Sum_probs=6.6
Q ss_pred CEEEEEECCHHHHH
Q ss_conf 98989838989999
Q gi|254780627|r 70 NIVHLSVPTNFLKA 83 (502)
Q Consensus 70 ~~L~L~vPn~Fikd 83 (502)
..+++.+|+--=|.
T Consensus 48 ~~l~iEAgTGtGKT 61 (697)
T PRK11747 48 HILVIEAGTGVGKS 61 (697)
T ss_pred CEEEEECCCCCHHH
T ss_conf 66999899972089
No 448
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=92.15 E-value=0.12 Score=31.62 Aligned_cols=33 Identities=33% Similarity=0.488 Sum_probs=23.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 898627888857999999999986306881686469
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~ 234 (502)
+.|.|+||.|||-||+.|+-- ..|+.--+++..
T Consensus 27 ~~i~GpSGsGKSTLL~~i~gl---~~p~sG~i~~~g 59 (206)
T TIGR03608 27 VAIVGESGSGKSTLLNIIGLL---EKPDSGQVYLNG 59 (206)
T ss_pred EEEECCCCCCHHHHHHHHHCC---CCCCCEEEEECC
T ss_conf 999879997099999999759---998975999999
No 449
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=92.15 E-value=1.1 Score=25.03 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=31.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
Q ss_conf 8986278888579999999999863068816864698889
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~ 238 (502)
++|.|-||.|||-|-+++...+.+. +..+..+..+++-
T Consensus 5 iW~TGLsGsGKTTlA~~l~~~L~~~--~~~~~~LDGD~~R 42 (157)
T pfam01583 5 VWFTGLSGSGKSTIANALERKLFAQ--GISVYVLDGDNVR 42 (157)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEECCHHHH
T ss_conf 9988989999999999999999975--9977997688775
No 450
>KOG0060 consensus
Probab=92.11 E-value=0.12 Score=31.69 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 489862788885799999999
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIAN 218 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~ 218 (502)
-|.|.|++|.|||-||..+|-
T Consensus 463 ~LLItG~sG~GKtSLlRvlgg 483 (659)
T KOG0060 463 NLLITGPSGCGKTSLLRVLGG 483 (659)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 599978998763689999853
No 451
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=92.08 E-value=0.23 Score=29.70 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=35.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
Q ss_conf 8986278888579999999999863068816864698889
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~ 238 (502)
+-|-|++|.|||-|.+++...+.+..+...++.++.+.|-
T Consensus 37 IgIaG~pGSGKSTlA~~l~~~L~~~~~~~~~~~vpmDGFH 76 (230)
T PRK09270 37 VGIAGPPGAGKSTLAETLWEALSQQGPELPAIQVPMDGFH 76 (230)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 9998999889999999999998623799857997365334
No 452
>PRK06321 replicative DNA helicase; Provisional
Probab=92.04 E-value=1.1 Score=24.95 Aligned_cols=106 Identities=14% Similarity=0.200 Sum_probs=56.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE----HHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf 89862788885799999999998630688168646----98889999999861988999999740310205444453175
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT----AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~----~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk 274 (502)
..|-|-+|+|||.|..-|+..+..+. +..|.|.| .++.+..++++.-.=+...++ .|+
T Consensus 229 iviaaRPsmGKTalalnia~~~a~~~-~~~v~~fSLEMs~~ql~~R~ls~~s~i~~~~i~-----------------~g~ 290 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQN-RLPVGIFSLEMTVDQLIHRIICSRSEVESKKIS-----------------VGD 290 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCC-----------------CCC
T ss_conf 99853899977999999999999856-994699757799999999998740376755210-----------------479
Q ss_pred CHHH---HHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEE
Q ss_conf 0699---99999999885698799964875676136303457653021157
Q gi|254780627|r 275 LIQH---EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 (502)
Q Consensus 275 ~tqe---e~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~ 322 (502)
-+.+ .+-...+.|.+..=.|-=++.-.+.+|..--.|++.+..-|+++
T Consensus 291 l~~~e~~~~~~a~~~l~~~~l~idd~~~~ti~~i~~~~r~~k~~~~l~~vv 341 (472)
T PRK06321 291 LSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKESYDIQFLI 341 (472)
T ss_pred CCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999999999999999854875786799998999999999998738998799
No 453
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=91.98 E-value=0.18 Score=30.43 Aligned_cols=120 Identities=14% Similarity=0.105 Sum_probs=53.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHH---HCCCC
Q ss_conf 898627888857999999999986306881686469888999999986198899999974031020544445---31750
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF---LQGKL 275 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqf---l~gk~ 275 (502)
++|.||+|.|||.|-..+|..+ +..|+-+.+-++-.++-=+. ++...+-++. +.--|+|-+.- +.-..
T Consensus 7 i~i~GpTasGKs~la~~la~~~-----~~eIIsaDS~QvYk~l~IgT-akps~~e~~~---i~Hhli~~~~~~e~~sv~~ 77 (304)
T PRK00091 7 IVLVGPTASGKTALAIELAKRL-----NGEIISVDSMQVYRGMDIGT-AKPTAEELAG---VPHHLIDILDPTESYSAAD 77 (304)
T ss_pred EEEECCCCCCHHHHHHHHHHHC-----CCEEEEECHHHHHCCCCEEE-CCCCHHHHCC---CCCEEEEEECCCCCEEHHH
T ss_conf 9998988658999999999987-----99899412688749998688-9999999818---9812434565887544999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHH
Q ss_conf 69999999999885698799964875676136303457653021157751588899999999
Q gi|254780627|r 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 (502)
Q Consensus 276 tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~ 337 (502)
-+++.-.+++.+..+||--|+++-..- -+.. |. .|+. .+.++|.+.|..+-.
T Consensus 78 f~~~a~~~i~~i~~~~kiPIiVGGTgl-Yl~a----Ll----~g~~-~~p~~~~~ir~~l~~ 129 (304)
T PRK00091 78 FQRDALAAIEDITARGKLPILVGGTGL-YFKA----LL----EGLS-FLPPADPEVRAELEA 129 (304)
T ss_pred HHHHHHHHHHHHHHCCCCCEEECCCHH-HHHH----HH----CCCC-CCCCCCHHHHHHHHH
T ss_conf 999999999999976998789808389-9999----97----1877-788889899999999
No 454
>PRK10646 putative ATPase; Provisional
Probab=91.94 E-value=0.37 Score=28.28 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 5489862788885799999999998
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASI 221 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~ 221 (502)
.=++++|+-|.|||+|.++++..+-
T Consensus 29 ~vi~L~G~LGaGKTtf~r~i~~~lg 53 (153)
T PRK10646 29 TVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7999988887899999999999849
No 455
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=91.91 E-value=0.1 Score=32.24 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=22.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf 986278888579999999999863068816864698
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e 235 (502)
=|+|.||.|||-|++.|+-=.+-. .-=+|+..+
T Consensus 27 AlFG~SGsGKTtli~~iaGL~rp~---~G~i~l~G~ 59 (361)
T TIGR02142 27 ALFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGE 59 (361)
T ss_pred EEECCCCCHHHHHHHHHHHCCCCC---CCEEEECCE
T ss_conf 712589970789999987316756---687998874
No 456
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=91.88 E-value=0.22 Score=29.86 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=27.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf 8986278888579999999999863068816864698
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e 235 (502)
+-|+|+.|+|||.|+.-+.+...+.+.+..|+..-.|
T Consensus 141 ~gIfggaGvGKT~Ll~e~i~n~~~~~~~v~V~~~IGE 177 (449)
T TIGR03305 141 AGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGE 177 (449)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 5665279998410189999865641488689999745
No 457
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=91.87 E-value=0.085 Score=32.80 Aligned_cols=53 Identities=19% Similarity=0.358 Sum_probs=35.2
Q ss_pred CCHHHHHHHCCC-CCHHHHHHHH-HHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 644788763288-6147899999-99982410013655555489862788885799999
Q gi|254780627|r 159 DSRFVFSTFIEG-SSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 (502)
Q Consensus 159 NpryTFDnFVVG-~sN~lA~aAA-kaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~a 215 (502)
...|+||...-. .+++.-|... +.+.+..-.+|. -.+|-||.+|.||||-|.+
T Consensus 40 ~~~f~FD~Vf~~~~tQ~~vy~~~~~plv~~~l~G~n----~ti~aYGqTGSGKTyTm~G 94 (337)
T cd01373 40 PRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYN----GSIFAYGQTGSGKTYTMMG 94 (337)
T ss_pred CCEEECCEECCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEEECCCCCCCEEEEEC
T ss_conf 967669815499999899999986989999858884----4899744788886179853
No 458
>pfam00225 Kinesin Kinesin motor domain.
Probab=91.84 E-value=0.067 Score=33.51 Aligned_cols=52 Identities=21% Similarity=0.457 Sum_probs=33.4
Q ss_pred CCHHHHHHHCC-CCCHHHHHHHH-HHHHHCCCCCCCCCCCC-EEEEECCCCCCHHHHHHH
Q ss_conf 64478876328-86147899999-99982410013655555-489862788885799999
Q gi|254780627|r 159 DSRFVFSTFIE-GSSNRVALTAA-QSIAEVDSHGYTTVRLN-PLFIHASVGLGKTHLLQA 215 (502)
Q Consensus 159 NpryTFDnFVV-G~sN~lA~aAA-kaVAe~pg~~~~~~~~N-PLfi~G~~GlGKTHLl~a 215 (502)
...|+||...- ..++...|..+ ..+.+.-=.+| | -+|-||.+|.||||-|.+
T Consensus 39 ~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~-----n~ti~aYGqTGSGKTyTm~G 93 (321)
T pfam00225 39 EKTFTFDRVFDPEATQEFVYEETAKPLVESVLEGY-----NVTIFAYGQTGSGKTYTMEG 93 (321)
T ss_pred CEEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCC-----CEEEEEECCCCCCCCEEECC
T ss_conf 60876685779899989999999899999996887-----37999979999984165268
No 459
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=91.83 E-value=0.3 Score=28.86 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8986278888579999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~ 220 (502)
+-|-|++|.|||-|+..|..-.
T Consensus 41 v~LiG~nGaGKSTLlr~i~Gl~ 62 (257)
T PRK11247 41 VAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999899888999999996589
No 460
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=91.82 E-value=1.1 Score=24.78 Aligned_cols=245 Identities=13% Similarity=0.136 Sum_probs=125.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHH-CCC--CCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCC
Q ss_conf 548986278888579999999999863-068--81686469888999999986198899999974031020544445317
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKR-QPN--LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~-~~~--~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~g 273 (502)
|=.|+||+-.- |.+-.++.+.+. .++ ...+|..--+|. +....+....+ | -+--+++|..-+-+.+
T Consensus 17 ~~ylLyG~d~f----li~~y~~~I~~~~~~~~~~~~~yfdE~d~~-~i~~~l~~~sL--F----g~~klv~IK~~~ki~~ 85 (328)
T PRK08487 17 NAFFLYGEDEF----QIEYYAKEISSKFKPEELLKELYFDEYNFS-QAKDFLSQGSL--F----GGKNLLVIKTDKKIPK 85 (328)
T ss_pred CEEEEECCCHH----HHHHHHHHHHHHHCCCCHHHHCCCCCCCHH-HHHHHHHCCCC--C----CCCEEEEEECCCCCCC
T ss_conf 45999568575----899999999998577521120022657889-99999735153--4----7774799957774552
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 50699999999998856987999648756761363034576530211577515888999999999998864311689789
Q gi|254780627|r 274 KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 (502)
Q Consensus 274 k~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~ 353 (502)
| ..+.|....+. ......|+.......+-..+.. ..+--..+..|+--+|+...-..+++.++ ...|+.++
T Consensus 86 k-~l~~Li~~~~~--~~~n~~Ii~~~~~~~k~~~~~k-~~~~~~~~~~V~ff~p~~~el~~~i~~~a-----k~~g~~Is 156 (328)
T PRK08487 86 K-ELKLLIELCEK--NSDNFFIIELYEASMKSSDTEK-IFTPKFIAKFVRFFKPNAWEALKLLQERA-----KELGLDID 156 (328)
T ss_pred C-HHHHHHHHHHC--CCCCEEEEEECCCHHHHHHHHH-HHHHHCCEEEEEECCCCHHHHHHHHHHHH-----HHHCCCCC
T ss_conf 2-69999998628--9777899997061334567888-77663362377513998689999999999-----99199779
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC---------CC------------CCCCHH
Q ss_conf 899999985027888999999999999863024687788999998763037---------88------------757989
Q gi|254780627|r 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTG---------ET------------KKMRIE 412 (502)
Q Consensus 354 ~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~------------~~i~~~ 412 (502)
++++.+|.++..+|.--+..-|.++..+ ++.||.+.++++....-... .. ...+.=
T Consensus 157 ~~al~~L~e~~g~dL~~~~nELeKL~l~---~~~It~edI~~l~~~~~~~~~~el~~~l~~kk~~~~~l~~lle~g~n~i 233 (328)
T PRK08487 157 QNALNHLFEIQNENLYLAANELEKLAIL---DAPITLKDIDRLVFGLGSVSFEDLFLKLLKKKDIKDDLFKLLEEGFNEI 233 (328)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCHH
T ss_conf 9999999998596399999899999853---7878899999985576667799999999753728999999997587789
Q ss_pred HHHHHHHHHH-CC----CHHHHHCCCCCHH---HCHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9999999980-99----9999408887740---144579999999985156878999884
Q gi|254780627|r 413 DIQRMVAKHY-NI----SRNDLLSNRRVRT---VVRPRQVAMYLSKIMTPRSFPEIGRRF 464 (502)
Q Consensus 413 ~I~~~V~~~~-~i----~~~~l~s~~R~~~---i~~~RqiamyL~r~~t~~s~~~IG~~f 464 (502)
.|+..+.++| ++ ..--+.|+.-.++ ...|+||+.=+.|.-...+..++-+.|
T Consensus 234 ~li~~l~~~f~~Lf~~~~~ik~~G~~d~~~ilGy~pP~~i~~~~~~~a~~~~~~~~~~if 293 (328)
T PRK08487 234 ALLNSLYRFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAENLAKQALRLKEAQYKEIF 293 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 999999999999999999999809968899848999889999999998733899999999
No 461
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.81 E-value=0.9 Score=25.50 Aligned_cols=96 Identities=21% Similarity=0.281 Sum_probs=51.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE-EHHHHHHHHHHHHH---CCC------------HHHHHHHHHHCCH
Q ss_conf 8986278888579999999999863068816864-69888999999986---198------------8999999740310
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL-TAEYFMWRFASAIR---DNC------------ALNLKDSLRNIDL 262 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~-~~e~F~~~~~~a~~---~~~------------~~~fr~~~r~~Dv 262 (502)
-||-||+..|||..-...+- ..+. +++|+ |++-|=.||-.-|. ... +.+.-.....-|+
T Consensus 2 iLVtGG~rSGKS~~AE~la~----~~~~-~~~YiAT~~~~D~Em~~RI~~Hr~~R~~~w~TiE~~~~l~~~l~~~~~~~~ 76 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAA----ELGG-PVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDV 76 (169)
T ss_pred EEEECCCCCCHHHHHHHHHH----HCCC-CCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCCCCE
T ss_conf 89977866368999999998----4599-819997889889899999999996689996699634439999985598885
Q ss_pred HHHHHHHHHC------CCC-----HHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 2054444531------750-----699999999998856987999648
Q gi|254780627|r 263 LLIDDMQFLQ------GKL-----IQHEFCHLLNSLLDSAKQVVAAAD 299 (502)
Q Consensus 263 LliDDiqfl~------gk~-----tqee~f~~~n~l~~~gkqiv~tsd 299 (502)
+|||.+-.+- +.. .++++-..+..+.+....+|+.|+
T Consensus 77 vLiDclt~wl~N~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~ViVSn 124 (169)
T cd00544 77 VLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVSN 124 (169)
T ss_pred EEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 998607899999874133123667999999999999708997999965
No 462
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=91.78 E-value=0.38 Score=28.16 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 5489862788885799999999998
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASI 221 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~ 221 (502)
.=+++.|+-|.|||++.++++..+-
T Consensus 16 ~vi~L~G~LGaGKTtfvr~i~~~lg 40 (123)
T pfam02367 16 DVVLLSGDLGAGKTTFVRGLAKGLG 40 (123)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7999988877889999999999859
No 463
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.75 E-value=1.2 Score=24.72 Aligned_cols=102 Identities=19% Similarity=0.255 Sum_probs=56.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHH-
Q ss_conf 8986278888579999999999863068816864698889999999861988999999740310205444453175069-
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQ- 277 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~tq- 277 (502)
+.+.|-||.|||-|.+++...+.+.. ..+..+.++++-..+ ..+ ..|- ..++..+
T Consensus 2 iW~tGLsgsGKTTlA~~l~~~L~~~~--~~~~~lDGD~iR~~l----~~~--lgys----------------~~~R~~n~ 57 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRG--RPVYVLDGDNVRHGL----NKD--LGFS----------------REDREENI 57 (149)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CCEEEECCHHHHHHH----CCC--CCCC----------------HHHHHHHH
T ss_conf 89879999999999999999999869--975997748899773----655--5988----------------78899999
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCC--EEEEECCC
Q ss_conf 999999999885698799964875676136303457653021--15775158
Q gi|254780627|r 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG--VSVPLGLH 327 (502)
Q Consensus 278 ee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~G--l~~~i~~P 327 (502)
.-+..+-..|.++|--+|++.-.|..+.. +..+..|..+ .-+-|..|
T Consensus 58 ~r~~~lak~l~~qg~~VIvs~isp~~~~R---~~~r~~i~~~~y~eIyl~~~ 106 (149)
T cd02027 58 RRIAEVAKLLADAGLIVIAAFISPYREDR---EAARKIIGGGDFLEVFVDTP 106 (149)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHH---HHHHHHCCCCCEEEEEECCC
T ss_conf 99999999998379827884167889999---99998747776699997187
No 464
>KOG3125 consensus
Probab=91.67 E-value=0.4 Score=28.04 Aligned_cols=94 Identities=23% Similarity=0.330 Sum_probs=55.8
Q ss_pred EEEECCCCCCHH-HHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHH----------HHC-CCHHHHH-HHH-HHCCHHH
Q ss_conf 898627888857-9999999999863068816864698889999999----------861-9889999-997-4031020
Q gi|254780627|r 199 LFIHASVGLGKT-HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA----------IRD-NCALNLK-DSL-RNIDLLL 264 (502)
Q Consensus 199 Lfi~G~~GlGKT-HLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a----------~~~-~~~~~fr-~~~-r~~DvLl 264 (502)
=||-||--.||| .||.-+-+++...+.-+-+.|..--.+..+.+.. +.. .-.++|- +-| -.+||+.
T Consensus 30 ~vI~gPMfSGKTt~LLrr~r~~~~~grrv~liK~~kDTRy~~~si~Thdg~~~~c~~lp~a~~~s~f~~d~~~~~vdVig 109 (234)
T KOG3125 30 HVILGPMFSGKTTELLRRIRREIIAGRRVLLIKYAKDTRYESSSIVTHDGIEMPCWALPDASFLSEFGKDALNGDVDVIG 109 (234)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 99952533763689999999987518569999756775211110573258756401167843677877887558310998
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHH-CCCEEEEEC
Q ss_conf 5444453175069999999999885-698799964
Q gi|254780627|r 265 IDDMQFLQGKLIQHEFCHLLNSLLD-SAKQVVAAA 298 (502)
Q Consensus 265 iDDiqfl~gk~tqee~f~~~n~l~~-~gkqiv~ts 298 (502)
||.-|||. -+.....++.+ +||.++.++
T Consensus 110 IDEaQFf~------dl~efc~evAd~~Gk~Vivag 138 (234)
T KOG3125 110 IDEAQFFG------DLYEFCREVADVHGKTVIVAG 138 (234)
T ss_pred ECHHHHHH------HHHHHHHHHHHCCCCEEEEEE
T ss_conf 42788748------999999998741497899996
No 465
>PRK07263 consensus
Probab=91.65 E-value=1.2 Score=24.65 Aligned_cols=46 Identities=26% Similarity=0.305 Sum_probs=33.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE----HHHHHHHHHHHH
Q ss_conf 89862788885799999999998630688168646----988899999998
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT----AEYFMWRFASAI 245 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~----~e~F~~~~~~a~ 245 (502)
..|-|.+|+|||.|..-|+..+..+. +..|+|.| +++.+..++.+.
T Consensus 206 iviaaRPsmGKTa~alnia~~iA~~~-~~~V~~fSlEMs~~ql~~R~la~~ 255 (453)
T PRK07263 206 IILAARPAVGKTAFVLNIAQNVGTKQ-KKTVAIFSLEMGAESLVDRMLAAE 255 (453)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 99972788847899999999999855-982899924699899999999986
No 466
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.61 E-value=1.2 Score=24.63 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=32.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
Q ss_conf 48986278888579999999999863068816864698889
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~ 238 (502)
-++|.|-||.|||-|-+++...+.+. +..++++.++.+-
T Consensus 26 viWlTGLSGSGKTTlA~~L~~~L~~~--~~~~~~LDGD~lR 64 (198)
T PRK03846 26 VLWFTGLSGSGKSTVAGALEEALHEL--GVHTYLLDGDNVR 64 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEECHHHHH
T ss_conf 99987999998899999999999975--9975997779998
No 467
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=91.56 E-value=0.33 Score=28.58 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=26.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
Q ss_conf 8986278888579999999999863068816864698889
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~ 238 (502)
+=+-|++|.|||.|+-....++.++++ +.-++.+-++
T Consensus 16 i~v~Gp~GSGKTaLie~~~~~L~~~~~---~aVI~~Di~t 52 (202)
T COG0378 16 IGVGGPPGSGKTALIEKTLRALKDEYK---IAVITGDIYT 52 (202)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHCC---EEEEECEEEC
T ss_conf 996179986789999999999975277---6899640400
No 468
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=91.55 E-value=0.34 Score=28.56 Aligned_cols=83 Identities=19% Similarity=0.123 Sum_probs=56.9
Q ss_pred HHHHHHHCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHH
Q ss_conf 9999740310205444453175--06999999999988569879996487567613630345765302115775158889
Q gi|254780627|r 253 LKDSLRNIDLLLIDDMQFLQGK--LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 (502)
Q Consensus 253 fr~~~r~~DvLliDDiqfl~gk--~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e 330 (502)
-|.-.++.++||+|-= .+|= ..|.+++.++..|.+.|+.||+++- .......+.||+. =+..|=++...+|+-=
T Consensus 150 ARALaq~P~ILLLDEP--Ts~LDi~~q~ell~lLr~L~~~G~TVI~vtH-DL~lA~~~cDrVi-vl~~GrIva~GtPeEV 225 (409)
T PRK09536 150 ARALAQATPVLLLDEP--TASLDINHQIRTLELVRDLADDGKTVVAAIH-DLNLAARYCDELV-LLADGRVHDAGRPASV 225 (409)
T ss_pred HHHHHCCCCEEEEECC--CCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC-CHHHHHHHCCEEE-EEECCEEEEEECCHHH
T ss_conf 9999679998999587--6679999999999999999858999999956-8999998699999-9989989987187597
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780627|r 331 MRFSILKNR 339 (502)
Q Consensus 331 ~r~~Il~~k 339 (502)
..-..|++-
T Consensus 226 lt~e~l~~v 234 (409)
T PRK09536 226 LTPDTLRAA 234 (409)
T ss_pred CCHHHHHHH
T ss_conf 598899998
No 469
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=91.52 E-value=1.2 Score=24.56 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=29.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHH
Q ss_conf 898627888857999999999986306881686469888999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFAS 243 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~ 243 (502)
++|.|++|.||+....-++.+ ..+.++++.+.+.+.+.
T Consensus 2 i~l~G~PGsGKgTqa~~La~~-------~~~~~is~gdlLR~~~~ 39 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK-------YGLPHISTGDLLREEIA 39 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH-------HCCEEECHHHHHHHHHH
T ss_conf 899899999879999999999-------79846768899999997
No 470
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=91.45 E-value=0.38 Score=28.17 Aligned_cols=46 Identities=24% Similarity=0.287 Sum_probs=31.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH
Q ss_conf 89862788885799999999998630688168646988899999998
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~ 245 (502)
-+|.|++|.|||-||..+.... .++++.+|+...-+.=+.-++.|+
T Consensus 459 tlIiGpTGsGKTvll~fl~aq~-~ky~~~~vf~FDKd~s~~i~~~a~ 504 (818)
T PRK13830 459 TLIFGPTGSGKSTLLALIAAQF-RRYAGAQIFAFDKGRSMLPLTLAA 504 (818)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-HHCCCCEEEEECCCCCHHHHHHHH
T ss_conf 5898999998899999999998-642798389974887689999980
No 471
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=91.37 E-value=1.3 Score=24.46 Aligned_cols=113 Identities=12% Similarity=0.100 Sum_probs=64.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE--------HHHHHHHHHHH---HHC--------CCH---------
Q ss_conf 89862788885799999999998630688168646--------98889999999---861--------988---------
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT--------AEYFMWRFASA---IRD--------NCA--------- 250 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~--------~e~F~~~~~~a---~~~--------~~~--------- 250 (502)
+-||=|.|=|||-- |+|..++.-..+.||+.+. .|...-.+... ++. ..+
T Consensus 24 I~VYTGdGKGKTTA--AlGlalRA~G~G~rV~ivQFlKg~~~~ge~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~~~a~~ 101 (178)
T PRK07414 24 VQVFTSSQRNFFTS--VMAQALRIAGQGTPVLIVQFLKGGIQQGPDQPIQLGQNLDWVRCDLPRCLDTPHLDESENKALQ 101 (178)
T ss_pred EEEEECCCCCHHHH--HHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 99995799980899--9999999953998799999755897301689997268968997477754668888899999999
Q ss_pred ---HHHHHHHH--HCCHHHHHHHHHHCCC-C-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHH
Q ss_conf ---99999974--0310205444453175-0-6999999999988569879996487567613630345765
Q gi|254780627|r 251 ---LNLKDSLR--NIDLLLIDDMQFLQGK-L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 (502)
Q Consensus 251 ---~~fr~~~r--~~DvLliDDiqfl~gk-~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR 315 (502)
+.-++... .+|+|++|.|-.--.- - .-+++..+++. .-.+--+|+|+..+|.+|-.+-| ++|.
T Consensus 102 ~~~~~a~~~l~~g~~DlvVLDEi~~Al~~gll~~eeVi~~L~~-rP~~~evVLTGR~ap~eLie~AD-lVTE 171 (178)
T PRK07414 102 ELWQYTQQVVDEGKYELVVLDELSLAIQFGLIPETEVLEFLEK-RPSHVDVILTGPEMPESLLAIAD-QITE 171 (178)
T ss_pred HHHHHHHHHHHCCCCCEEEECHHHHHHHCCCCCHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHH-HHHH
T ss_conf 9999999998688988899703689987699259999999981-89998899969999999999854-8886
No 472
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=91.33 E-value=1.3 Score=24.43 Aligned_cols=96 Identities=19% Similarity=0.253 Sum_probs=51.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE-EHHHHHHHHHHHHH---CCC------------HH-HHHHHHHHCC
Q ss_conf 8986278888579999999999863068816864-69888999999986---198------------89-9999974031
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL-TAEYFMWRFASAIR---DNC------------AL-NLKDSLRNID 261 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~-~~e~F~~~~~~a~~---~~~------------~~-~fr~~~r~~D 261 (502)
-||-||++.||+..-...+ ... +.++.|+ |++-|=.|+-.-+. ... +. .+.+....-|
T Consensus 4 ~LVtGG~rSGKS~~AE~la----~~~-~~~~~YiAT~~~~D~Em~~RI~~Hr~~R~~~w~TiE~p~~l~~~l~~~~~~~~ 78 (170)
T PRK05800 4 ILVTGGARSGKSRFAERLA----AQS-GLQVLYIATAQPLDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGR 78 (170)
T ss_pred EEEECCCCCCHHHHHHHHH----HHC-CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHCCCCC
T ss_conf 9997987634899999999----856-99829997588888789999999997378995799646678999987457788
Q ss_pred HHHHHHHHHHCC------C--CHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 020544445317------5--0699999999998856987999648
Q gi|254780627|r 262 LLLIDDMQFLQG------K--LIQHEFCHLLNSLLDSAKQVVAAAD 299 (502)
Q Consensus 262 vLliDDiqfl~g------k--~tqee~f~~~n~l~~~gkqiv~tsd 299 (502)
++|||.+-.+-. . ...+++-..++.+......+|+.|+
T Consensus 79 ~vLlDclt~wl~N~l~~~~~~~~~~~~~~ll~~l~~~~~~~ViVsn 124 (170)
T PRK05800 79 CVLVDCLTTWVTNLLFEDGEEAIAAEIEALLAALQRLPAKIILVSN 124 (170)
T ss_pred EEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 6872267899999875023667999999999999827997899977
No 473
>PRK06315 type III secretion system ATPase; Provisional
Probab=91.30 E-value=0.28 Score=29.10 Aligned_cols=37 Identities=32% Similarity=0.412 Sum_probs=27.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH
Q ss_conf 898627888857999999999986306881686469888
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F 237 (502)
.-|.|++|+|||+||.-|++.... .+..|+.+-.|..
T Consensus 167 ~gIfagsGvGKs~Ll~~i~~~~~~--adv~V~~lIGeRg 203 (442)
T PRK06315 167 IGIFAGAGVGKSSLLGMIARNAEE--ADVNVIALIGERG 203 (442)
T ss_pred EECCCCCCCCHHHHHHHHHHHHCC--CCCEEEEEECCCC
T ss_conf 640389999888999999974403--8934999955113
No 474
>KOG2170 consensus
Probab=91.27 E-value=1.3 Score=24.39 Aligned_cols=211 Identities=15% Similarity=0.202 Sum_probs=102.1
Q ss_pred HHHHHHCCCCC--HHHHHHHHHHHHHCCCCCCCCCCCCEE--EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH
Q ss_conf 78876328861--478999999998241001365555548--98627888857999999999986306881686469888
Q gi|254780627|r 162 FVFSTFIEGSS--NRVALTAAQSIAEVDSHGYTTVRLNPL--FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 (502)
Q Consensus 162 yTFDnFVVG~s--N~lA~aAAkaVAe~pg~~~~~~~~NPL--fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F 237 (502)
--+++.+-|.- -+.-..|-++--.+|-+ --|| =+||.+|+||.|--.-|++.+....-. - .|
T Consensus 78 ~dL~~~lfGQHla~~~Vv~alk~~~~n~~p------~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~--S------~~ 143 (344)
T KOG2170 78 KDLARALFGQHLAKQLVVNALKSHWANPNP------RKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLR--S------PF 143 (344)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHCCCCC------CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC--C------HH
T ss_conf 999998632087999999999998628999------987589830899875648999999998751125--6------26
Q ss_pred HHHHHHHHH---CCCHHHHHHHHH--------H--CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC---------CE-E
Q ss_conf 999999986---198899999974--------0--31020544445317506999999999988569---------87-9
Q gi|254780627|r 238 MWRFASAIR---DNCALNLKDSLR--------N--IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSA---------KQ-V 294 (502)
Q Consensus 238 ~~~~~~a~~---~~~~~~fr~~~r--------~--~DvLliDDiqfl~gk~tqee~f~~~n~l~~~g---------kq-i 294 (502)
+..|+.... .+.++..|++.+ . -.++++|++.-+. .+++..+.-+.+.. |. -
T Consensus 144 V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp-----~gLld~lkpfLdyyp~v~gv~frkaIF 218 (344)
T KOG2170 144 VHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP-----PGLLDVLKPFLDYYPQVSGVDFRKAIF 218 (344)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHCC-----HHHHHHHHHHHCCCCCCCCCCCCCEEE
T ss_conf 887655415997678999999999999999985577548731054358-----769998766630463213554551489
Q ss_pred EEECCCCHHHHCCCCHHHHHHHHCCE-EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC----CCHH
Q ss_conf 99648756761363034576530211-577515888999999999998864311689789899999985027----8889
Q gi|254780627|r 295 VAAADRPPSELESLDPRIRSRLQGGV-SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT----TSGR 369 (502)
Q Consensus 295 v~tsd~~P~~l~~l~~rL~SR~~~Gl-~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~----~~vR 369 (502)
||-|..--.++..+-- .-...|. --+++--++|--+ .. ...+....|+..++.+-..++.++- -+-|
T Consensus 219 IfLSN~gg~eI~~~aL---~~~~~g~~re~~~l~~~E~~L---~~--~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~ 290 (344)
T KOG2170 219 IFLSNAGGSEIARIAL---ENARNGKPREQLRLKSFEPAL---MQ--SAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKR 290 (344)
T ss_pred EEECCCCCHHHHHHHH---HHHHCCCCCCCCHHHHHHHHH---HH--HHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCHH
T ss_conf 9971786147799999---999747975645265526999---87--553544566401421546677650576762389
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999863024687788999998763
Q gi|254780627|r 370 ELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 (502)
Q Consensus 370 ~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~ 401 (502)
....++.--. . .-+-.++.+++++++..+.
T Consensus 291 hV~~C~r~el-~-~rg~~~d~~~~erva~~l~ 320 (344)
T KOG2170 291 HVRSCIRAEL-R-KRGLAPDQDFVERVANSLS 320 (344)
T ss_pred HHHHHHHHHH-H-HCCCCCCHHHHHHHHHHHC
T ss_conf 9999999999-8-6546552689999998621
No 475
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=91.25 E-value=0.45 Score=27.65 Aligned_cols=63 Identities=27% Similarity=0.267 Sum_probs=41.2
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHHCC--CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 764478876328861478999999998241--0013655555489862788885799999999998630688
Q gi|254780627|r 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVD--SHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL 227 (502)
Q Consensus 158 LNpryTFDnFVVG~sN~lA~aAAkaVAe~p--g~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~ 227 (502)
+.+++.-+-|| |.-+ |..||--|++-- |+.. ---+.+-|++|.|||-|..||+.++-...|-.
T Consensus 17 ~~~~~~~~GlV-GQ~~--AReAagiiv~mIk~~K~a----GraiLlaGppGTGKTAlA~aiakeLG~~vPF~ 81 (395)
T pfam06068 17 GEARYVSEGLV-GQEK--AREAAGVIVEMIKEGKIA----GRAVLIAGPPGTGKTALAIAISKELGEDTPFC 81 (395)
T ss_pred CCEEECCCCCC-CHHH--HHHHHHHHHHHHHHCCCC----CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 88836457754-5499--999989999999727757----73899877999888999999999748799734
No 476
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=91.22 E-value=0.41 Score=27.94 Aligned_cols=47 Identities=23% Similarity=0.301 Sum_probs=37.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH
Q ss_conf 898627888857999999999986306881686469888999999986
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~ 246 (502)
-+|.|++|.|||-||.=+.....+... .+|+|+.-+.=..-|+.++.
T Consensus 439 T~I~G~tGaGKTvLl~~lla~~~k~~~-~~iv~fDk~~g~~~~~~a~g 485 (796)
T COG3451 439 TLIIGPTGAGKTVLLSFLLAQALKYGN-PQIVAFDKDNGAYIFIEALG 485 (796)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEECCCCCHHHHHHHHC
T ss_conf 499889888789999999999987459-81899848973577888749
No 477
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.18 E-value=0.19 Score=30.33 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 898627888857999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANA 219 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~ 219 (502)
+-+-||||.|||-||..|+--
T Consensus 34 ~tlLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899888889999999677
No 478
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=91.16 E-value=0.09 Score=32.61 Aligned_cols=53 Identities=21% Similarity=0.372 Sum_probs=34.7
Q ss_pred CCHHHHHHHCC-CCCHHHHHHHH-HHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 64478876328-86147899999-99982410013655555489862788885799999
Q gi|254780627|r 159 DSRFVFSTFIE-GSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 (502)
Q Consensus 159 NpryTFDnFVV-G~sN~lA~aAA-kaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~a 215 (502)
...|+||...- ..+++-.|... ..+.+..-.+|.. -+|-||.+|.||||-|.+
T Consensus 44 ~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~l~G~n~----ti~aYGqTGSGKTyTm~G 98 (328)
T cd00106 44 PKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG----TIFAYGQTGSGKTYTMFG 98 (328)
T ss_pred CCEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCE----EEEEECCCCCCCCEEECC
T ss_conf 7177658677989998999999889999999688866----999968999985407457
No 479
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=91.14 E-value=0.64 Score=26.55 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 48986278888579999999999
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~ 220 (502)
-+-|.|.+|.|||.|+.++.--.
T Consensus 276 ivgl~G~nGsGKsTL~~~l~Gl~ 298 (491)
T PRK10982 276 ILGIAGLVGAKRTDIVETLFGIR 298 (491)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89977899997889999981986
No 480
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=91.10 E-value=0.088 Score=32.70 Aligned_cols=52 Identities=21% Similarity=0.402 Sum_probs=34.1
Q ss_pred CCHHHHHHHCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCC-EEEEECCCCCCHHHHHHH
Q ss_conf 644788763288-614789999999982410013655555-489862788885799999
Q gi|254780627|r 159 DSRFVFSTFIEG-SSNRVALTAAQSIAEVDSHGYTTVRLN-PLFIHASVGLGKTHLLQA 215 (502)
Q Consensus 159 NpryTFDnFVVG-~sN~lA~aAAkaVAe~pg~~~~~~~~N-PLfi~G~~GlGKTHLl~a 215 (502)
...|+||.-.-. .+++..|.....+.+.--.+| | -+|-||.+|.||||-|.+
T Consensus 44 ~~~f~FD~Vf~~~~tQ~~vy~~v~plv~~~l~G~-----n~ti~aYGqTGSGKTyTm~G 97 (329)
T cd01366 44 KKSFSFDRVFDPDASQEDVFEEVSPLVQSALDGY-----NVCIFAYGQTGSGKTYTMEG 97 (329)
T ss_pred CEEEECCEEECCCCCHHHHHHHHHHHHHHHHCCC-----CEEEEEECCCCCCCCEEECC
T ss_conf 6077768673999998999999999999986777-----24899647899998547266
No 481
>TIGR00345 arsA arsenite-activated ATPase (arsA); InterPro: IPR003348 This ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. In Escherichia coli an anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773. This ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance . The ArsA and ArsB proteins form a membrane-bound pump that functions as an oxyanion-translocating ATPase. The ArsC protein is an arsenate reductase that reduces arsenate to arsenite, which is subsequently pumped out of the cell .; GO: 0005524 ATP binding, 0006820 anion transport, 0016020 membrane.
Probab=91.07 E-value=0.2 Score=30.12 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=33.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf 986278888579999999999863068816864698
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e 235 (502)
|+=|+-|+|||-.--|+|-.+.++.|+.||+-+|++
T Consensus 1 f~gGKGGVGKTt~SaAtA~~lAe~qPGkkvLl~STD 36 (330)
T TIGR00345 1 FFGGKGGVGKTTISAATAIRLAEQQPGKKVLLVSTD 36 (330)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 977878823888999999999851899779998408
No 482
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=91.02 E-value=0.39 Score=28.11 Aligned_cols=47 Identities=19% Similarity=0.118 Sum_probs=30.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH--HHHHHHHH
Q ss_conf 898627888857999999999986306881686469888--99999998
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF--MWRFASAI 245 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F--~~~~~~a~ 245 (502)
+-|+|++|+|||-||.-+.+.+.+.+....|+..-.|.. .++|+..+
T Consensus 144 igIfggaGvGKTvL~~~ii~n~~~~~~~v~V~~~iGER~rEv~e~~~el 192 (459)
T PRK12597 144 TGLFGGAGVGKTVLMMELIFNISKRHQGSSVFAGVGERSREGHELYLEM 192 (459)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf 7743689998215789999987755178368886245468899999998
No 483
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=91.00 E-value=1.4 Score=24.21 Aligned_cols=184 Identities=16% Similarity=0.261 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 31020544445317506999999999988569879996487567613630345765302115775158889999999999
Q gi|254780627|r 260 IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 (502)
Q Consensus 260 ~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k 339 (502)
.-|.+|||.+.+. ..+++-|+-++.+=-. +--+|+.++.+- .+-+-++||.. ++.. |++.+.-...+
T Consensus 105 ~KV~II~~Ad~mt-~~AaNaLLK~LEEPp~-~t~~iLlt~~~~----~lLpTI~SRCQ---~i~f-p~~~~~l~~~l--- 171 (290)
T PRK07276 105 RQVFIIKDADKMH-VNAANSLLKVIEEPQS-EIYIFLLTNDEN----KVLPTIKSRTQ---IFHF-PKNEAYLYQLL--- 171 (290)
T ss_pred EEEEEECCHHHCC-HHHHHHHHHHHCCCCC-CCEEEEEECCHH----HCCHHHHHCCC---CCCC-CCCHHHHHHHH---
T ss_conf 2799977656529-9999999997038988-837998879925----49378873660---1028-99679999999---
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 98864311689789899999985027888999999999999863024687788999998763037887579899999999
Q gi|254780627|r 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 (502)
Q Consensus 340 ~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~I~~~V~ 419 (502)
+.. .+++...+++|. ++.|+-+. ..+.....+.. -.+.+...++.+... .....-.+.+.+
T Consensus 172 ------~~~--gi~~~~a~~la~-~~~~~~~a----~~l~~~~~f~~--~~~~~~~~~~~l~~~---~~~~~l~v~~~~- 232 (290)
T PRK07276 172 ------EEK--GLLKTQAKLLAK-LAQSTSEA----EKLAQNSKFLE--LIDQAERFVSILLKD---QDQAYLQVARLV- 232 (290)
T ss_pred ------HHC--CCCHHHHHHHHH-HHCCHHHH----HHHHHCHHHHH--HHHHHHHHHHHHHCC---CCHHHHHHHHHH-
T ss_conf ------986--998679999999-96599999----99872548999--999999999999808---827799999999-
Q ss_pred HHHCCCHHHHHCCCCCHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 98099999940888774014457999999998515687899988479843799999999999986169999999999
Q gi|254780627|r 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 (502)
Q Consensus 420 ~~~~i~~~~l~s~~R~~~i~~~RqiamyL~r~~t~~s~~~IG~~fg~rdHsTV~~a~~ki~~~~~~d~~~~~~i~~i 496 (502)
.+.+.+-.++.++ ..+..++++++...+ --+.+-++-+.++++..|..|...++.+
T Consensus 233 --------~l~~~k~~q~~~l-~ll~l~~~~~~~~~~------------~~~~L~~il~ak~~l~aNVnfq~~lE~L 288 (290)
T PRK07276 233 --------QLADDKEEQDQVF-TLLTLLLAKERAQVT------------PRTQLEAVYQARKMWQSNVSFQNALEYM 288 (290)
T ss_pred --------HHHCCHHHHHHHH-HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf --------8632288999999-999999998760789------------9999999999999998157999999997
No 484
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=90.95 E-value=0.91 Score=25.49 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=26.9
Q ss_pred HHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHH-HCCCEEEEEC
Q ss_conf 9999974031020544445317506999999999988-5698799964
Q gi|254780627|r 252 NLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLL-DSAKQVVAAA 298 (502)
Q Consensus 252 ~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~-~~gkqiv~ts 298 (502)
--|.-||+.|+||+||.=-=-.-.+...+...++.+. ..||.+|+.+
T Consensus 593 LARAly~~p~ILLLDEatSALD~~se~ivq~al~~l~~~~gRTtIvIt 640 (1467)
T PTZ00265 593 IARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIA 640 (1467)
T ss_pred HHHHHHCCCCEEEECCCHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 999996289867864620112188899999999885254787499995
No 485
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=90.93 E-value=0.19 Score=30.27 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=26.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH
Q ss_conf 898627888857999999999986306881686469888
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F 237 (502)
+.|-|+||.|||-||+.|+-- ..|+.--+++..++.
T Consensus 29 ~~ivGpSGsGKSTLL~~i~gL---~~p~~G~i~i~g~~i 64 (213)
T cd03262 29 VVIIGPSGSGKSTLLRCINLL---EEPDSGTIIIDGLKL 64 (213)
T ss_pred EEEECCCCCHHHHHHHHHHCC---CCCCCEEEEECCEEC
T ss_conf 999999984499999999819---999864999999999
No 486
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=90.88 E-value=0.46 Score=27.60 Aligned_cols=80 Identities=19% Similarity=0.186 Sum_probs=47.2
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCE-------EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 7887632886147899999999824100136555554-------898627888857999999999986306881686469
Q gi|254780627|r 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP-------LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 (502)
Q Consensus 162 yTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NP-------Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~ 234 (502)
..|-||-.|+.-.-....|..+...++. +.-.||. -.|.|++|.|||-|+..+.....+-+ .+++++.-
T Consensus 407 ~~lh~~~~G~~~~n~wg~av~~~~T~~g--tpy~fNfH~~d~GHtlI~G~TGsGKTtl~~fL~aq~~ky~--~~~f~fDk 482 (800)
T PRK13898 407 ASQHNYPLGKKFNNHWGEAVTVFDTTSG--TPFYFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFS--PRMFFFDK 482 (800)
T ss_pred HHHCCCCCCCCCCCCCCCCCEECCCCCC--CCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC--CEEEEEEC
T ss_conf 7761688897768888756650303899--8779867459877569989999989999999999987548--87999979
Q ss_pred HHHHHHHHHHH
Q ss_conf 88899999998
Q gi|254780627|r 235 EYFMWRFASAI 245 (502)
Q Consensus 235 e~F~~~~~~a~ 245 (502)
..=+.-++.|+
T Consensus 483 d~~~~i~~~a~ 493 (800)
T PRK13898 483 DRGAEIFIRAL 493 (800)
T ss_pred CCCHHHHHHHH
T ss_conf 99869999982
No 487
>PRK08118 topology modulation protein; Reviewed
Probab=90.83 E-value=1.4 Score=24.11 Aligned_cols=99 Identities=16% Similarity=0.253 Sum_probs=66.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC--
Q ss_conf 548986278888579999999999863068816864698889999999861988999999740310205444453175--
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-- 274 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk-- 274 (502)
+=..|.|++|.|||.|-..++... + +.++-+|.++...|-
T Consensus 2 ~rI~IiG~~GsGKSTlAr~L~~~~-----~---------------------------------ip~~~LD~l~w~~~w~~ 43 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL-----N---------------------------------IPVHHLDALFWKPNWEG 43 (167)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-----C---------------------------------CCEEECCCEEECCCCCC
T ss_conf 679998899987999999999988-----9---------------------------------69796443476689946
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 0699999999998856987999648756761363034576530211577515888999999999998
Q gi|254780627|r 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 (502)
Q Consensus 275 ~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~ 341 (502)
...+||....+++.+...-|| -+. +.. .++.|+- ..-+++=+..|-.-....++++-+.
T Consensus 44 ~~~~e~~~~~~~~~~~~~WIi-dGn-y~~---~~~~r~~---~aD~iI~Ld~p~~~~~~r~~kR~~~ 102 (167)
T PRK08118 44 VPKEEQRTVQNELVKEDEWII-DGN-YGG---TMDIRLN---AADTIIFLDIPRTICLYRAFKRRVQ 102 (167)
T ss_pred CCHHHHHHHHHHHHHCCCEEE-ECC-CHH---HHHHHHH---HCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 888999999999983898799-477-177---9987797---6999999859899999999999999
No 488
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=90.75 E-value=1.4 Score=24.06 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8986278888579999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~ 220 (502)
+-|.|++|.|||-|++.+....
T Consensus 358 vaiVG~sGsGKSTl~~LL~r~~ 379 (567)
T COG1132 358 VAIVGPSGSGKSTLIKLLLRLY 379 (567)
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 8885588885789999998615
No 489
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=90.72 E-value=1.5 Score=24.04 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=24.8
Q ss_pred CEEEEECCCCCCHH-HHHHHHHHHHHHH---CCCCCEEEEEH
Q ss_conf 54898627888857-9999999999863---06881686469
Q gi|254780627|r 197 NPLFIHASVGLGKT-HLLQAIANASIKR---QPNLRVVYLTA 234 (502)
Q Consensus 197 NPLfi~G~~GlGKT-HLl~ai~~~~~~~---~~~~~v~y~~~ 234 (502)
..+++-+|+|+||| -||.|.-..+... .+..+++|.+.
T Consensus 28 ~~~llEaPTGtGKTlalL~~al~~~~~~~~~~~~~ki~~~t~ 69 (289)
T smart00488 28 KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSR 69 (289)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHCHHCCCCCEEEEEEC
T ss_conf 979998999651899999999999996701024561687615
No 490
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=90.72 E-value=1.5 Score=24.04 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=24.8
Q ss_pred CEEEEECCCCCCHH-HHHHHHHHHHHHH---CCCCCEEEEEH
Q ss_conf 54898627888857-9999999999863---06881686469
Q gi|254780627|r 197 NPLFIHASVGLGKT-HLLQAIANASIKR---QPNLRVVYLTA 234 (502)
Q Consensus 197 NPLfi~G~~GlGKT-HLl~ai~~~~~~~---~~~~~v~y~~~ 234 (502)
..+++-+|+|+||| -||.|.-..+... .+..+++|.+.
T Consensus 28 ~~~llEaPTGtGKTlalL~~al~~~~~~~~~~~~~ki~~~t~ 69 (289)
T smart00489 28 KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSR 69 (289)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHCHHCCCCCEEEEEEC
T ss_conf 979998999651899999999999996701024561687615
No 491
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=90.72 E-value=0.25 Score=29.52 Aligned_cols=104 Identities=13% Similarity=0.188 Sum_probs=50.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHH-C-CCCCEEEEEHHHHHH--HH-HHHHHCCCHHHH---HHHH-HHCCH-HHHHHH
Q ss_conf 8986278888579999999999863-0-688168646988899--99-999861988999---9997-40310-205444
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKR-Q-PNLRVVYLTAEYFMW--RF-ASAIRDNCALNL---KDSL-RNIDL-LLIDDM 268 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~-~-~~~~v~y~~~e~F~~--~~-~~a~~~~~~~~f---r~~~-r~~Dv-LliDDi 268 (502)
++++|+.|.|||-|++++....... + |..-..+.+.+.... .+ ..-......++| +..| +.++. +++-|+
T Consensus 8 ivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~ 87 (219)
T COG1100 8 IVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDS 87 (219)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCEEECCCCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 99999999988999999964767655676145404320362266600267676798699999887504389789999976
Q ss_pred HHHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf 453175-0699999999998856987999648756
Q gi|254780627|r 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPP 302 (502)
Q Consensus 269 qfl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P 302 (502)
....+- ...++.+..+..+-..+..+|+..++.-
T Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~D 122 (219)
T COG1100 88 TLRESSDELTEEWLEELRELAPDDVPILLVGNKID 122 (219)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 20565788999999999874668867999697610
No 492
>PRK06696 uridine kinase; Validated
Probab=90.72 E-value=0.31 Score=28.85 Aligned_cols=43 Identities=26% Similarity=0.265 Sum_probs=34.6
Q ss_pred CEE--EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH
Q ss_conf 548--986278888579999999999863068816864698889999
Q gi|254780627|r 197 NPL--FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 (502)
Q Consensus 197 NPL--fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~ 241 (502)
-|| =|-|++|.|||.|.+.++..+.+. +..|+.++.++|...-
T Consensus 25 rpl~VgIdG~~gSGKTTlA~~La~~L~~~--G~~V~~v~~Ddf~~~~ 69 (227)
T PRK06696 25 RPLRVAIDGITASGKTTFANELAEEIKKR--GRPVIRASIDDFHNPK 69 (227)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEECCCCCCCCH
T ss_conf 86899977899878799999999999746--9948997154434737
No 493
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=90.69 E-value=0.31 Score=28.85 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8986278888579999999999863
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKR 223 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~ 223 (502)
.-|.|++|+|||.|++.|.+.....
T Consensus 18 ~~I~g~~g~GKt~l~~~i~~~~~~~ 42 (213)
T pfam00006 18 IGIFGGSGTGKTVLLGMIARNAKAD 42 (213)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 7787899998899999999856618
No 494
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=90.66 E-value=0.2 Score=30.19 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=27.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCC----CEEEEEHHHHHHH
Q ss_conf 9862788885799999999998630688----1686469888999
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQPNL----RVVYLTAEYFMWR 240 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~~~~----~v~y~~~e~F~~~ 240 (502)
=|.|+||.|||.+.+++.+.+.+..-.. ...|++.+.|...
T Consensus 3 gIaG~SgSGKTT~a~~L~~~l~~~~~~~~~~~~d~~~~~d~~~~~ 47 (196)
T pfam00485 3 GVAGSSGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFYMD 47 (196)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHCCC
T ss_conf 998998571999999999996605877641243179860410244
No 495
>pfam02572 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin adenosyltransferase, EC:2.5.1.17, involved in cobalamin (vitamin B12) biosynthesis. These enzymes catalyse the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=90.61 E-value=1.5 Score=23.97 Aligned_cols=110 Identities=22% Similarity=0.259 Sum_probs=60.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHH------H--HHHHHHC--------------CC-------
Q ss_conf 89862788885799999999998630688168646988899------9--9999861--------------98-------
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW------R--FASAIRD--------------NC------- 249 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~------~--~~~a~~~--------------~~------- 249 (502)
+.||=+.|=|||-- |+|..++....+.+|+.+ +|+. | ++..+.+ ++
T Consensus 6 i~iytG~GKGKTTA--AlGlalRA~G~G~rV~iv---QFlKg~~~~GE~~~l~~l~~v~~~~~g~gf~~~~~~~~~d~~~ 80 (172)
T pfam02572 6 LIVYTGNGKGKSTA--AFGMALRALGHGMRVGVV---QFIKGKWETGEEAALEALPEVEWHVMGEGFTWETQDRERDIAA 80 (172)
T ss_pred EEEEECCCCCHHHH--HHHHHHHHHCCCCEEEEE---EEECCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHH
T ss_conf 99995799971889--999999982599889999---9953887763899998789968997889985878887889999
Q ss_pred ----HHHHHHHHH--HCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHH
Q ss_conf ----899999974--03102054444531750--6999999999988569879996487567613630345765
Q gi|254780627|r 250 ----ALNLKDSLR--NIDLLLIDDMQFLQGKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 (502)
Q Consensus 250 ----~~~fr~~~r--~~DvLliDDiqfl~gk~--tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR 315 (502)
.+..++..+ .+|++++|.|-..-+.. +.+++..+++. ...+--+|+|+..+|.+|-.+-| ++|.
T Consensus 81 a~~~~~~a~~~l~~~~~dlvVLDEi~~ai~~gli~~~~v~~~l~~-rp~~~evVlTGr~~p~~L~e~AD-~VTE 152 (172)
T pfam02572 81 AREAWEKAKEALASGSYDLVVLDELNYALKYGYLDLEEVLELLRN-RPEGQHVVLTGRGAPPELIELAD-LVTE 152 (172)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHH-HHHH
T ss_conf 999999999997588989997355799975599689999999982-89987799989999999999704-7763
No 496
>KOG1942 consensus
Probab=90.53 E-value=0.54 Score=27.10 Aligned_cols=76 Identities=22% Similarity=0.226 Sum_probs=46.6
Q ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
Q ss_conf 64478876328861478999999998241001365555548986278888579999999999863068816864698889
Q gi|254780627|r 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 (502)
Q Consensus 159 NpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~ 238 (502)
++.+.=+-|| |.-| |..||--|.+-.-.-. ..---++|-||+|.|||-|.-||..++-..-|-+ -.+-+|-|.
T Consensus 32 ~~~~~~~g~v-GQ~~--AReAagiivdlik~Kk--maGravLlaGppgtGKTAlAlaisqELG~kvPFc--pmvgSEvyS 104 (456)
T KOG1942 32 NAVEVAAGFV-GQEN--AREAAGIIVDLIKSKK--MAGRAVLLAGPPGTGKTALALAISQELGPKVPFC--PMVGSEVYS 104 (456)
T ss_pred CEEECCCCCC-CCHH--HHHHHHHHHHHHHHHH--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC--CCCCHHHHH
T ss_conf 8211244511-5266--6655108999998663--2672799736998765689999999747999856--664105554
Q ss_pred HHH
Q ss_conf 999
Q gi|254780627|r 239 WRF 241 (502)
Q Consensus 239 ~~~ 241 (502)
++.
T Consensus 105 ~Ev 107 (456)
T KOG1942 105 NEV 107 (456)
T ss_pred HHH
T ss_conf 345
No 497
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=90.53 E-value=0.65 Score=26.52 Aligned_cols=110 Identities=20% Similarity=0.248 Sum_probs=64.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHH------H--HHHHHH--------------CCC-------
Q ss_conf 89862788885799999999998630688168646988899------9--999986--------------198-------
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW------R--FASAIR--------------DNC------- 249 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~------~--~~~a~~--------------~~~------- 249 (502)
+-||=+.|=|||-- |+|..++.-..+.+|+.+ +|+. | ++..+. ..+
T Consensus 5 i~vytG~GKGKTTA--AlG~alRA~G~G~rV~iv---QFlKg~~~~GE~~~l~~l~~i~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 5 IQVYTGNGKGKTTA--ALGLALRALGHGYRVGVV---QFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred EEEEECCCCCHHHH--HHHHHHHHHCCCCEEEEE---EEECCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHH
T ss_conf 99995799970899--999999984499989999---9815898755999998489968998899973227987999999
Q ss_pred ----HHHHHHHHH--HCCHHHHHHHHHHCCC-C-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHH
Q ss_conf ----899999974--0310205444453175-0-6999999999988569879996487567613630345765
Q gi|254780627|r 250 ----ALNLKDSLR--NIDLLLIDDMQFLQGK-L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 (502)
Q Consensus 250 ----~~~fr~~~r--~~DvLliDDiqfl~gk-~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR 315 (502)
.+.-++..+ .+|+|++|.|-..-.. - ..+++..+++. ...+-.+|+|+..+|.+|-.+-| ++|.
T Consensus 80 a~~~~~~a~~~l~~~~~dlvVLDEi~~a~~~gli~~~~v~~~l~~-rp~~~evVlTGr~~p~~L~e~AD-lVTE 151 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA-KPEDLELVLTGRNAPKELIEAAD-LVTE 151 (159)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHCC-EEEE
T ss_conf 999999999998688989997366899998599179999999984-89997899969999999998575-0246
No 498
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=90.51 E-value=0.83 Score=25.78 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 898627888857999999999986
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIK 222 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~ 222 (502)
-.|.|+.|.|||-++.||..-+-.
T Consensus 25 ~~ivG~nGsGKSni~~ai~~~~g~ 48 (178)
T cd03239 25 NAIVGPNGSGKSNIVDAICFVLGG 48 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 799899988778999999999866
No 499
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.46 E-value=0.56 Score=26.97 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=12.0
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 89862788885799999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIAN 218 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~ 218 (502)
+-|-|++|.|||-|+..+..
T Consensus 36 vaivG~nGsGKSTL~k~l~G 55 (279)
T PRK13635 36 VAIVGHNGSGKSTLAKLLNG 55 (279)
T ss_pred EEEECCCCCHHHHHHHHHHC
T ss_conf 99999999659999999972
No 500
>PRK06749 replicative DNA helicase; Provisional
Probab=90.45 E-value=1.5 Score=23.88 Aligned_cols=115 Identities=10% Similarity=0.105 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE----EEHHHHHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 4100136555554898627888857999999999986306881686----469888999999986198899999974031
Q gi|254780627|r 186 VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY----LTAEYFMWRFASAIRDNCALNLKDSLRNID 261 (502)
Q Consensus 186 ~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y----~~~e~F~~~~~~a~~~~~~~~fr~~~r~~D 261 (502)
.||... .|-|.+|+|||.|..-|+..+.++ +..|.| +++++.+..++++.-.=+...++.-
T Consensus 184 ~~g~Li--------viaaRPsmGKTa~alnia~~~a~~--g~~v~~fSlEMs~~~l~~R~ls~~s~v~~~~i~~~----- 248 (428)
T PRK06749 184 QEGDFV--------VLGARPSMGKTAFALNVGLHAAKS--GAAVGLFSLEMSSKQLLKRMASCVGEVSGGRLKNP----- 248 (428)
T ss_pred CCCCEE--------EEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHCC-----
T ss_conf 988689--------996279897689999999999964--99279983789999999999997549988886277-----
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCC--EEE
Q ss_conf 0205444453175069999999999885698799964875676136303457653021--157
Q gi|254780627|r 262 LLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG--VSV 322 (502)
Q Consensus 262 vLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~G--l~~ 322 (502)
+..-+..-.+.+-..++.+.+..=.|--++...+.+|..--.|+..+...+ |++
T Consensus 249 -------~~~~~~~~~~~~~~a~~~l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~g~~~~liv 304 (428)
T PRK06749 249 -------KHRFAMEDWEKVSKAFAEIGELPLEIYDNAGVTVQDIWMQTRKLKRKHGDKKVLII 304 (428)
T ss_pred -------CCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf -------67799999999999999985596599758997679999999999997499876999
Done!