HHsearch alignment for GI: 254780627 and conserved domain: pfam00448
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=96.65 E-value=0.0096 Score=39.53 Aligned_cols=104 Identities=20% Similarity=0.267 Sum_probs=66.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH-------HHHHHHHHC--------CCHHH-HHH-----
Q ss_conf 548986278888579999999999863068816864698889-------999999861--------98899-999-----
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM-------WRFASAIRD--------NCALN-LKD----- 255 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~-------~~~~~a~~~--------~~~~~-fr~----- 255 (502)
T Consensus 2 ~vi~lvGptGvGKTTTiaKLAa~~~~~--~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~ 79 (196)
T pfam00448 2 NVILLVGLQGSGKTTTIAKLAAYLKKQ--GKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKA 79 (196)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699998999998899999999999977--992899975877688999999999863981781487778789999999998
Q ss_pred HHHHCCHHHHHHHHHHCCC----C-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHC
Q ss_conf 9740310205444453175----0-6999999999988569879996487567613
Q gi|254780627|r 256 SLRNIDLLLIDDMQFLQGK----L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 (502)
Q Consensus 256 ~~r~~DvLliDDiqfl~gk----~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~ 306 (502)
T Consensus 80 ~~~~~D~IlIDT----aGr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~ 131 (196)
T pfam00448 80 KAENYDVVLVDT----AGRLQNDKNLMDELKKIKRVIAPDEVLLVLDATTGQNALN 131 (196)
T ss_pred HHCCCCEEEEEC----CCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH
T ss_conf 846899999989----9987476778999999985228730289985677821378